Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.53638 * 2 1 4 4 C 1.54967 * 110.47718 * 237.34091 * 2 1 3 5 5 C 1.54888 * 102.77671 * 279.23416 * 4 2 1 6 6 C 1.54270 * 104.19710 * 322.08163 * 5 4 2 7 7 C 1.52999 * 110.03294 * 264.33037 * 6 5 4 8 8 C 1.53000 * 110.03460 * 142.89395 * 6 5 4 9 9 C 1.53876 * 106.59550 * 23.60947 * 6 5 4 10 10 N 1.46910 * 110.03279 * 119.28263 * 9 6 5 11 11 C 1.46895 * 110.99769 * 155.68915 * 10 9 6 12 12 C 1.50702 * 109.46770 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 H 1.08998 * 109.47045 * 297.38166 * 1 2 3 21 21 H 1.09000 * 109.47246 * 57.38571 * 1 2 3 22 22 H 1.08999 * 109.47022 * 177.38606 * 1 2 3 23 23 H 1.09003 * 109.46829 * 182.61706 * 3 2 1 24 24 H 1.08995 * 109.47026 * 302.60996 * 3 2 1 25 25 H 1.08995 * 109.47056 * 62.61711 * 3 2 1 26 26 H 1.08997 * 110.72059 * 160.91636 * 4 2 1 27 27 H 1.08999 * 110.92187 * 37.63649 * 4 2 1 28 28 H 1.09000 * 110.48647 * 203.40971 * 5 4 2 29 29 H 1.09000 * 110.60332 * 80.81543 * 5 4 2 30 30 H 1.09005 * 109.46900 * 177.16809 * 7 6 5 31 31 H 1.08999 * 109.46616 * 297.15794 * 7 6 5 32 32 H 1.09000 * 109.47504 * 57.16171 * 7 6 5 33 33 H 1.08996 * 109.46791 * 302.83653 * 8 6 5 34 34 H 1.09000 * 109.47057 * 62.83728 * 8 6 5 35 35 H 1.09002 * 109.46944 * 182.83640 * 8 6 5 36 36 H 1.09004 * 110.03769 * 240.66421 * 9 6 5 37 37 H 1.00894 * 110.99909 * 279.64789 * 10 9 6 38 38 H 1.09004 * 109.47258 * 60.00516 * 11 10 9 39 39 H 1.08994 * 109.47601 * 300.00108 * 11 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 2.0721 -0.7834 -1.2222 5 6 1.9649 -2.2576 -0.7592 6 6 2.3468 -2.2136 0.7348 7 6 3.8300 -2.5473 0.9067 8 6 1.4908 -3.2062 1.5241 9 6 2.0700 -0.7789 1.2172 10 7 1.0669 -0.7935 2.2905 11 6 1.1906 0.3965 3.1428 12 6 0.1483 0.3462 4.2300 13 1 -0.5372 -0.4868 4.2828 14 6 0.0738 1.3604 5.1611 15 7 0.9087 2.3745 5.0970 16 14 -1.2132 1.2942 6.5133 17 1 -1.0099 0.0711 7.3307 18 1 -1.0851 2.4948 7.3778 19 1 -2.5682 1.2642 5.9062 20 1 -0.3633 0.4726 0.9125 21 1 -0.3634 0.5539 -0.8656 22 1 -0.3633 -1.0266 -0.0469 23 1 3.1556 1.4128 -0.0469 24 1 1.6756 1.9673 -0.8656 25 1 1.7516 1.9388 0.9125 26 1 3.1096 -0.5159 -1.4225 27 1 1.4530 -0.6090 -2.1022 28 1 2.6644 -2.8834 -1.3134 29 1 0.9460 -2.6250 -0.8818 30 1 4.1015 -2.4645 1.9592 31 1 4.0157 -3.5647 0.5626 32 1 4.4295 -1.8504 0.3209 33 1 0.4361 -2.9752 1.3748 34 1 1.6939 -4.2187 1.1754 35 1 1.7326 -3.1317 2.5843 36 1 2.9922 -0.3206 1.5746 37 1 0.1346 -0.8727 1.9130 38 1 1.0438 1.2924 2.5394 39 1 2.1832 0.4199 3.5924 40 1 0.8560 3.0882 5.7518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703874744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -38.201794 kcal Electronic energy + Delta-G solvation = -16948.370641 eV Core-core repulsion = 14568.289453 eV Total energy + Delta-G solvation = -2380.081188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13452 -36.06952 -35.00609 -33.96266 -30.16570 -28.99601 -28.44033 -27.73325 -25.85941 -24.08028 -23.25739 -19.82998 -19.50619 -18.26584 -16.91071 -16.61303 -16.08951 -15.61066 -14.87210 -14.66115 -14.44619 -14.07962 -13.93809 -13.65386 -13.38703 -13.16595 -13.05250 -12.93752 -12.70107 -12.63859 -12.54799 -12.22328 -12.09089 -11.80251 -11.44913 -11.41743 -11.31036 -11.20085 -11.10624 -10.92462 -10.62777 -8.80787 -8.20146 -6.30728 1.38999 1.42478 1.50312 2.39869 3.12384 3.56509 3.62501 3.83151 4.09116 4.25204 4.32051 4.40883 4.50048 4.60556 4.63108 4.75227 4.82083 4.88157 4.93508 5.00819 5.01741 5.02771 5.10894 5.13784 5.19431 5.21431 5.29069 5.35864 5.43341 5.48462 5.52420 5.55086 5.66979 5.67463 5.78101 6.09814 6.59301 6.83517 7.00653 7.40127 8.90594 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033718 B = 0.007784 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.216216 B = 3596.478705 C = 3891.929048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.103 4.103 5 C -0.107 4.107 6 C -0.061 4.061 7 C -0.131 4.131 8 C -0.110 4.110 9 C 0.094 3.906 10 N -0.679 5.679 11 C 0.214 3.786 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.266 1.266 20 H 0.033 0.967 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.337 0.663 38 H -0.030 1.030 39 H -0.016 1.016 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -8.200 -13.303 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.062 4.062 7 C -0.188 4.188 8 C -0.167 4.167 9 C -0.017 4.017 10 N -0.311 5.311 11 C 0.086 3.914 12 C -0.571 4.571 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.191 1.191 20 H 0.052 0.948 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.159 0.841 38 H -0.013 1.013 39 H 0.002 0.998 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.220 -8.438 -12.772 15.468 hybrid contribution -0.706 1.342 0.707 1.673 sum 1.514 -7.096 -12.065 14.079 Atomic orbital electron populations 1.21788 0.94693 1.02048 1.01081 1.22001 0.95655 0.95069 0.97077 1.21852 1.00579 0.96250 1.00719 1.22480 1.00969 0.94603 0.95982 1.22445 1.01836 0.96503 0.93624 1.21188 0.95887 0.93500 0.95599 1.21826 0.94601 1.01784 1.00613 1.21489 0.98833 0.96978 0.99440 1.22377 0.94432 0.95241 0.89645 1.60791 1.07836 1.41302 1.21166 1.19141 0.94550 0.86703 0.90990 1.21553 1.16750 1.06274 1.12545 0.92132 1.25917 0.98380 0.94879 1.00492 1.70095 1.38924 1.10989 1.37373 0.85455 0.79196 0.77541 0.78511 1.19486 1.20833 1.19124 0.94836 0.91290 0.91374 0.92587 0.91510 0.95669 0.91147 0.90353 0.89998 0.91236 0.94630 0.91003 0.92547 0.93632 0.92542 0.94280 0.93780 0.84126 1.01284 0.99754 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 7.19 71.98 0.52 -3.73 16 2 C -0.10 -2.95 0.79 -51.08 -0.04 -2.99 16 3 C -0.14 -4.47 8.44 71.98 0.61 -3.86 16 4 C -0.10 -2.36 5.81 31.91 0.19 -2.17 16 5 C -0.11 -2.36 5.55 31.67 0.18 -2.19 16 6 C -0.06 -1.73 0.94 -51.46 -0.05 -1.78 16 7 C -0.13 -3.38 8.15 71.98 0.59 -2.80 16 8 C -0.11 -3.25 7.37 71.98 0.53 -2.72 16 9 C 0.09 3.38 2.34 45.64 0.11 3.48 16 10 N -0.68 -29.57 4.24 -491.81 -2.09 -31.66 16 11 C 0.21 11.72 4.89 85.56 0.42 12.14 16 12 C -0.53 -31.10 9.32 25.60 0.24 -30.86 16 13 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 16 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H 0.03 1.26 6.28 -2.39 -0.01 1.25 16 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.07 1.89 7.08 -2.39 -0.02 1.88 16 23 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.02 1.01 6.23 -2.39 -0.01 0.99 16 26 H 0.07 1.53 8.04 -2.39 -0.02 1.52 16 27 H 0.08 1.55 8.06 -2.39 -0.02 1.53 16 28 H 0.08 1.49 7.84 -2.39 -0.02 1.47 16 29 H 0.07 1.49 7.34 -2.39 -0.02 1.47 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.37 7.46 -2.39 -0.02 1.35 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 36 H 0.04 1.81 7.05 -2.38 -0.02 1.79 16 37 H 0.34 14.11 5.09 -89.70 -0.46 13.65 16 38 H -0.03 -1.77 5.93 -2.38 -0.01 -1.79 16 39 H -0.02 -0.96 8.07 -2.39 -0.02 -0.98 16 40 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -64.09 299.99 4.49 -59.60 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.53 Total: 19.04 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.74 Total: -36.94 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -1.80 Total: -89.03 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -64.09 4.49 -59.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703874744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.399 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds