Wall clock time and date at job start Mon Mar 30 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99650 * 2 1 4 4 C 1.50710 * 109.47050 * 293.95302 * 3 2 1 5 5 H 1.07992 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99798 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00547 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99736 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47309 * 270.00317 * 8 6 4 10 10 H 1.48493 * 109.47048 * 30.00584 * 8 6 4 11 11 H 1.48508 * 109.46772 * 150.00090 * 8 6 4 12 12 C 1.46900 * 111.00235 * 123.95015 * 2 1 3 13 13 C 1.53005 * 109.46932 * 66.04769 * 12 2 1 14 14 H 1.09000 * 115.54845 * 332.90871 * 13 12 2 15 15 C 1.52995 * 117.50006 * 118.61820 * 13 12 2 16 16 C 1.52997 * 60.00164 * 107.48800 * 15 13 12 17 17 H 1.09003 * 117.49654 * 107.48698 * 16 15 13 18 18 C 1.52995 * 117.51903 * 252.52200 * 16 15 13 19 19 C 1.53003 * 109.47344 * 136.35704 * 18 16 15 20 20 C 1.53008 * 109.47060 * 256.34904 * 18 16 15 21 21 C 1.52992 * 109.47556 * 16.35080 * 18 16 15 22 22 H 1.09000 * 109.47714 * 60.00161 * 1 2 3 23 23 H 1.09007 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47132 * 299.99517 * 1 2 3 25 25 H 1.09003 * 109.47144 * 173.95867 * 3 2 1 26 26 H 1.08992 * 109.47731 * 53.95511 * 3 2 1 27 27 H 0.96995 * 120.00335 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46990 * 186.04426 * 12 2 1 29 29 H 1.08996 * 109.47165 * 306.04867 * 12 2 1 30 30 H 1.09002 * 117.50049 * 214.97925 * 15 13 12 31 31 H 1.09009 * 117.49897 * 359.97438 * 15 13 12 32 32 H 1.08998 * 109.47542 * 45.50574 * 19 18 16 33 33 H 1.08999 * 109.47601 * 165.51865 * 19 18 16 34 34 H 1.09007 * 109.46745 * 285.51276 * 19 18 16 35 35 H 1.09005 * 109.46643 * 59.99957 * 20 18 16 36 36 H 1.08995 * 109.47195 * 179.97438 * 20 18 16 37 37 H 1.08994 * 109.47109 * 300.00426 * 20 18 16 38 38 H 1.08995 * 109.47186 * 80.95740 * 21 18 16 39 39 H 1.09004 * 109.47330 * 200.95866 * 21 18 16 40 40 H 1.09003 * 109.46839 * 320.96072 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0274 3.3491 -1.5290 7 7 2.7134 4.0013 -0.6159 8 14 1.5836 4.1863 -3.1388 9 1 2.6604 3.9492 -4.1335 10 1 0.3057 3.6294 -3.6505 11 1 1.4318 5.6461 -2.9120 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.7312 -2.4419 0.3893 15 6 2.7816 -3.2453 0.8584 16 6 1.9426 -3.1832 2.1363 17 1 1.2470 -4.0017 2.3220 18 6 2.5932 -2.5751 3.3803 19 6 1.5978 -1.6414 4.0719 20 6 2.9968 -3.6936 4.3433 21 6 3.8358 -1.7823 2.9702 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.0797 1.3445 0.1082 26 1 1.5611 1.9274 0.8308 27 1 2.9886 4.9171 -0.7782 28 1 3.0797 -0.6610 1.1756 29 1 1.5612 -0.3872 2.0628 30 1 2.6381 -4.1047 0.2034 31 1 3.7976 -2.8530 0.9035 32 1 0.6247 -2.1286 4.1330 33 1 1.9528 -1.4114 5.0764 34 1 1.5066 -0.7187 3.4987 35 1 3.7059 -4.3588 3.8506 36 1 3.4607 -3.2604 5.2293 37 1 2.1116 -4.2584 4.6355 38 1 3.5362 -0.7989 2.6079 39 1 4.4940 -1.6672 3.8314 40 1 4.3625 -2.3160 2.1790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704088228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:06 Heat of formation + Delta-G solvation = 12.937716 kcal Electronic energy + Delta-G solvation = -16311.357194 eV Core-core repulsion = 13933.493582 eV Total energy + Delta-G solvation = -2377.863612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76770 -37.75932 -34.96503 -34.34561 -29.83133 -28.92603 -28.29102 -27.56140 -25.87830 -23.70149 -22.65078 -21.00168 -19.20952 -18.49759 -17.05138 -16.63234 -16.26488 -15.97300 -15.35698 -14.85122 -14.73455 -14.56326 -13.86649 -13.67175 -13.35872 -13.16656 -13.03855 -12.92474 -12.79289 -12.55922 -12.35976 -12.27193 -12.04356 -11.90805 -11.72307 -11.41985 -11.32933 -11.16252 -10.69374 -10.63947 -10.43791 -8.91113 -8.20407 -6.31071 1.40756 1.42748 1.53789 2.40334 2.89257 3.11696 3.42054 3.71326 3.90945 3.98615 4.19455 4.25953 4.28603 4.52253 4.54815 4.60453 4.67737 4.79095 4.79689 4.83692 4.91232 4.93216 5.01177 5.07187 5.14430 5.14846 5.18002 5.22696 5.30167 5.31399 5.38585 5.51383 5.57355 5.61638 5.66104 6.06219 6.35912 6.69200 6.85550 7.38939 8.90698 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045802 B = 0.005788 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.178568 B = 4836.612138 C = 5017.164379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.550 5.550 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.264 1.264 11 H -0.281 1.281 12 C 0.074 3.926 13 C -0.149 4.149 14 H 0.102 0.898 15 C -0.177 4.177 16 C -0.125 4.125 17 H 0.116 0.884 18 C -0.036 4.036 19 C -0.148 4.148 20 C -0.131 4.131 21 C -0.171 4.171 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.005 0.995 25 H 0.000 1.000 26 H -0.041 1.041 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -14.951 7.886 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.275 5.275 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.188 1.188 11 H -0.207 1.207 12 C -0.053 4.053 13 C -0.168 4.168 14 H 0.120 0.880 15 C -0.213 4.213 16 C -0.144 4.144 17 H 0.134 0.866 18 C -0.036 4.036 19 C -0.205 4.205 20 C -0.188 4.188 21 C -0.228 4.228 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.024 0.976 25 H 0.018 0.982 26 H -0.023 1.023 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.054 -15.016 7.497 16.816 hybrid contribution -0.277 1.368 -0.003 1.396 sum -1.330 -13.647 7.494 15.626 Atomic orbital electron populations 1.22207 0.87951 1.00905 0.99534 1.62010 1.07987 1.14911 1.42546 1.19357 0.93435 0.84011 0.94941 1.21484 1.34865 0.97565 1.02338 0.91916 1.25939 0.94976 0.98009 1.00792 1.70091 1.39379 1.11942 1.36232 0.85359 0.78993 0.77237 0.78880 1.19799 1.18805 1.20670 1.22301 0.99371 0.92374 0.91260 1.22218 1.00575 0.90770 1.03221 0.87975 1.23358 0.96405 1.01292 1.00244 1.22546 1.02333 1.00582 0.88896 0.86556 1.20007 0.94415 0.95405 0.93766 1.22087 0.99262 0.99016 1.00124 1.21799 1.01578 0.97356 0.98077 1.22613 0.97961 1.00336 1.01893 0.92687 0.90225 0.97649 0.98154 1.02328 0.92671 0.91352 0.94533 0.87993 0.88427 0.92062 0.92055 0.93753 0.92235 0.92291 0.91880 0.93196 0.92127 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.18 127.69 1.17 2.88 16 2 N -0.55 -25.00 4.75 -927.04 -4.41 -29.41 16 3 C 0.21 11.64 4.72 85.56 0.40 12.04 16 4 C -0.52 -30.68 8.52 25.60 0.22 -30.46 16 5 H 0.06 3.60 7.10 -2.91 -0.02 3.58 16 6 C 0.00 0.04 5.46 84.65 0.46 0.50 16 7 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 8 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.07 2.75 3.18 86.30 0.27 3.02 16 13 C -0.15 -4.40 5.60 -10.79 -0.06 -4.46 16 14 H 0.10 3.03 6.38 -2.39 -0.02 3.01 16 15 C -0.18 -4.41 9.41 30.59 0.29 -4.12 16 16 C -0.13 -2.87 4.99 -10.80 -0.05 -2.93 16 17 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.04 -0.80 0.76 -52.18 -0.04 -0.84 16 19 C -0.15 -3.49 8.30 71.98 0.60 -2.89 16 20 C -0.13 -2.27 8.32 71.98 0.60 -1.67 16 21 C -0.17 -4.33 7.23 71.98 0.52 -3.81 16 22 H 0.05 2.37 6.86 -2.39 -0.02 2.35 16 23 H 0.08 2.64 6.24 -2.38 -0.01 2.63 16 24 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 25 H 0.00 0.02 7.93 -2.39 -0.02 0.00 16 26 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.07 2.67 5.08 -2.39 -0.01 2.65 16 29 H 0.04 1.38 4.65 -2.39 -0.01 1.37 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 2.54 5.34 -2.38 -0.01 2.53 16 32 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 33 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 34 H 0.04 1.27 4.72 -2.38 -0.01 1.26 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.53 4.49 -2.39 -0.01 1.52 16 39 H 0.06 1.36 7.96 -2.38 -0.02 1.35 16 40 H 0.07 1.68 5.15 -2.39 -0.01 1.67 16 Total: -1.00 -64.17 297.86 3.29 -60.88 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.00 Total: 11.42 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 4.38 Total: -32.73 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -4.12 Total: -86.66 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.17 3.29 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704088228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds