Wall clock time and date at job start Mon Mar 30 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99846 * 2 1 4 4 C 1.50708 * 109.46714 * 66.04353 * 3 2 1 5 5 H 1.07997 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99580 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99892 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47070 * 90.00109 * 8 6 4 10 10 H 1.48499 * 109.47238 * 210.00344 * 8 6 4 11 11 H 1.48503 * 109.47200 * 330.00581 * 8 6 4 12 12 C 1.46897 * 111.00037 * 236.04812 * 2 1 3 13 13 C 1.52997 * 109.47126 * 293.94984 * 12 2 1 14 14 H 1.08999 * 115.55295 * 330.72726 * 13 12 2 15 15 C 1.53006 * 117.49620 * 116.39160 * 13 12 2 16 16 C 1.52997 * 117.49797 * 185.01152 * 13 12 2 17 17 H 1.09002 * 117.49884 * 0.02562 * 16 13 12 18 18 C 1.53006 * 117.49537 * 145.02216 * 16 13 12 19 19 C 1.52998 * 109.47035 * 180.02562 * 18 16 13 20 20 C 1.52994 * 109.47090 * 300.01689 * 18 16 13 21 21 C 1.53002 * 109.47020 * 60.02089 * 18 16 13 22 22 H 1.09000 * 109.46904 * 183.95249 * 1 2 3 23 23 H 1.09001 * 109.47338 * 303.95524 * 1 2 3 24 24 H 1.09002 * 109.47326 * 63.95532 * 1 2 3 25 25 H 1.08999 * 109.46946 * 186.03959 * 3 2 1 26 26 H 1.08992 * 109.47310 * 306.04976 * 3 2 1 27 27 H 0.96998 * 119.99914 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46841 * 173.95513 * 12 2 1 29 29 H 1.08999 * 109.47216 * 53.95378 * 12 2 1 30 30 H 1.08990 * 117.50086 * 214.97868 * 15 13 12 31 31 H 1.09004 * 117.49623 * 0.02562 * 15 13 12 32 32 H 1.09000 * 109.47085 * 60.00217 * 19 18 16 33 33 H 1.09002 * 109.47409 * 180.02562 * 19 18 16 34 34 H 1.08997 * 109.47668 * 300.00310 * 19 18 16 35 35 H 1.08992 * 109.47257 * 60.00180 * 20 18 16 36 36 H 1.09010 * 109.46685 * 179.97438 * 20 18 16 37 37 H 1.08993 * 109.47404 * 299.99596 * 20 18 16 38 38 H 1.09000 * 109.47442 * 59.99536 * 21 18 16 39 39 H 1.08996 * 109.47216 * 180.02562 * 21 18 16 40 40 H 1.09005 * 109.46754 * 299.99523 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0275 3.3492 1.5290 7 7 2.7127 4.0017 0.6155 8 14 1.5836 4.1865 3.1387 9 1 2.6605 3.9494 4.1334 10 1 1.4317 5.6462 2.9120 11 1 0.3057 3.6294 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 1.6316 -2.2425 -0.9703 14 1 1.5318 -2.5886 0.0584 15 6 0.7063 -2.8651 -2.0179 16 6 2.1923 -3.2289 -1.9968 17 1 2.8208 -2.8259 -2.7909 18 6 2.5706 -4.6259 -1.5005 19 6 3.1076 -5.4543 -2.6694 20 6 3.6483 -4.5092 -0.4209 21 6 1.3342 -5.3113 -0.9151 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9233 25 1 3.0797 1.3445 -0.1081 26 1 1.5611 1.9274 -0.8308 27 1 2.9872 4.9178 0.7775 28 1 3.0798 -0.6610 -1.1756 29 1 1.5611 -0.3872 -2.0628 30 1 -0.0017 -3.6210 -1.6784 31 1 0.3572 -2.2227 -2.8264 32 1 3.9884 -4.9659 -3.0863 33 1 3.3767 -6.4497 -2.3161 34 1 2.3400 -5.5375 -3.4388 35 1 3.2658 -3.9191 0.4119 36 1 3.9174 -5.5045 -0.0670 37 1 4.5290 -4.0210 -0.8379 38 1 0.5664 -5.3945 -1.6843 39 1 1.6038 -6.3064 -0.5612 40 1 0.9518 -4.7211 -0.0823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704088233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:09 Heat of formation + Delta-G solvation = 6.616581 kcal Electronic energy + Delta-G solvation = -15892.193969 eV Core-core repulsion = 13514.056252 eV Total energy + Delta-G solvation = -2378.137717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23116 -36.36485 -33.81161 -32.30750 -27.80271 -27.30585 -27.20463 -26.58704 -23.92844 -22.69890 -20.78941 -19.76456 -18.26809 -16.33285 -15.80436 -14.91001 -14.48319 -14.17010 -14.03542 -13.76064 -13.55778 -12.83818 -12.57789 -12.34950 -11.99189 -11.83861 -11.68912 -11.61762 -11.25946 -11.04710 -10.92059 -10.88261 -10.82083 -10.59424 -10.51690 -10.34428 -9.93884 -9.55783 -9.38455 -9.10683 -8.40201 -7.17397 -5.99520 -4.00581 3.34320 3.39883 3.43724 4.00051 4.44456 4.61077 4.84236 4.94126 5.09615 5.22456 5.31678 5.35727 5.46889 5.54184 5.65349 5.69289 5.77755 5.86344 5.89105 5.91061 6.01411 6.07249 6.13161 6.17345 6.24723 6.30681 6.32683 6.41842 6.44185 6.51607 6.70939 6.82795 7.35101 7.39467 7.84745 8.14316 8.26940 8.61215 9.07355 9.63450 11.11521 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048388 B = 0.004959 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.512041 B = 5644.943776 C = 5689.188560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.085 3.915 13 C -0.125 4.125 14 H 0.109 0.891 15 C -0.186 4.186 16 C -0.144 4.144 17 H 0.099 0.901 18 C -0.037 4.037 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.144 4.144 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.007 0.993 25 H 0.029 0.971 26 H -0.011 1.011 27 H 0.261 0.739 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -16.670 -5.300 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.044 4.044 13 C -0.143 4.143 14 H 0.127 0.873 15 C -0.223 4.223 16 C -0.162 4.162 17 H 0.117 0.883 18 C -0.037 4.037 19 C -0.195 4.195 20 C -0.197 4.197 21 C -0.201 4.201 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.007 0.993 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.224 -16.707 -4.899 17.454 hybrid contribution -0.436 1.042 -0.017 1.130 sum -1.661 -15.665 -4.916 16.502 Atomic orbital electron populations 1.22181 0.88995 0.99504 1.00136 1.62080 1.06925 1.17558 1.39759 1.19730 0.95333 0.81729 0.96555 1.21179 1.34651 0.96894 1.01682 0.91861 1.24995 0.95358 0.97355 0.96977 1.69965 1.38537 1.11442 1.34043 0.86498 0.78855 0.78402 0.83649 1.20629 1.21350 1.19868 1.21620 0.99634 0.90698 0.92425 1.22433 1.02362 0.93895 0.95641 0.87286 1.23286 0.92875 1.03683 1.02442 1.22416 0.96365 0.95272 1.02191 0.88331 1.20024 0.95449 0.93000 0.95235 1.21836 1.00725 0.99200 0.97690 1.21846 0.98278 1.01079 0.98505 1.21998 0.97415 0.99866 1.00829 0.93515 0.91055 0.97409 0.95318 0.99277 0.92975 0.91301 0.96109 0.88706 0.89588 0.92737 0.92960 0.92814 0.92024 0.93206 0.92640 0.92488 0.93060 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.19 60.07 0.55 1.38 16 2 N -0.54 -12.04 4.75 -244.37 -1.16 -13.21 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 4 C -0.51 -14.51 8.46 -34.44 -0.29 -14.80 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.08 1.59 5.24 -3.83 -0.02 1.57 16 13 C -0.12 -1.88 3.65 -90.62 -0.33 -2.22 16 14 H 0.11 1.75 7.07 -51.93 -0.37 1.38 16 15 C -0.19 -2.40 9.21 -26.73 -0.25 -2.64 16 16 C -0.14 -1.81 4.87 -90.62 -0.44 -2.25 16 17 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 18 C -0.04 -0.40 0.88 -154.51 -0.14 -0.54 16 19 C -0.14 -1.30 8.46 37.16 0.31 -0.99 16 20 C -0.14 -1.57 8.31 37.15 0.31 -1.26 16 21 C -0.14 -1.46 7.07 37.16 0.26 -1.20 16 22 H 0.05 0.82 7.28 -51.93 -0.38 0.44 16 23 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 26 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 29 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 30 H 0.09 1.11 5.85 -51.93 -0.30 0.81 16 31 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 36 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -29.56 313.12 -8.34 -37.91 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.47 Total: -3.51 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.15 Total: -16.36 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.43 Total: -39.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.56 -8.34 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704088233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.524 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds