Wall clock time and date at job start Mon Mar 30 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 C 1.52999 * 109.47340 * 240.00331 * 2 1 3 5 5 C 1.52995 * 109.46920 * 119.99940 * 2 1 3 6 6 H 1.09001 * 115.55996 * 205.68960 * 5 2 1 7 7 C 1.53001 * 117.50342 * 351.38229 * 5 2 1 8 8 C 1.52998 * 60.00100 * 107.48753 * 7 5 2 9 9 H 1.09006 * 117.52010 * 252.52352 * 8 7 5 10 10 C 1.53004 * 117.49923 * 107.49249 * 8 7 5 11 11 N 1.46894 * 109.47161 * 116.37430 * 10 8 7 12 12 C 1.46898 * 110.99937 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47342 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 H 1.08993 * 109.47340 * 300.00078 * 1 2 3 23 23 H 1.09000 * 109.47003 * 60.00145 * 1 2 3 24 24 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47029 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47480 * 299.99988 * 3 2 1 27 27 H 1.09003 * 109.46467 * 60.00054 * 3 2 1 28 28 H 1.09003 * 109.46868 * 300.00176 * 4 2 1 29 29 H 1.09000 * 109.47462 * 59.99805 * 4 2 1 30 30 H 1.08992 * 109.46975 * 180.02562 * 4 2 1 31 31 H 1.08999 * 117.49477 * 359.97438 * 7 5 2 32 32 H 1.08990 * 117.50315 * 214.98122 * 7 5 2 33 33 H 1.09005 * 109.46750 * 356.38005 * 10 8 7 34 34 H 1.08993 * 109.46980 * 236.37920 * 10 8 7 35 35 H 1.00896 * 111.00538 * 303.96097 * 11 10 8 36 36 H 1.09002 * 109.47032 * 60.00278 * 12 11 10 37 37 H 1.09001 * 109.47520 * 300.00127 * 12 11 10 38 38 H 1.09002 * 109.46935 * 60.00090 * 13 12 11 39 39 H 1.08998 * 109.47061 * 300.00883 * 13 12 11 40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.0322 -0.4261 1.5906 7 6 1.0105 -1.1018 2.3151 8 6 1.6358 -2.1852 1.4342 9 1 1.0068 -2.6346 0.6657 10 6 2.6552 -3.1230 2.0842 11 7 2.1372 -4.4974 2.0664 12 6 3.0920 -5.4279 2.6833 13 6 2.5190 -6.8461 2.6457 14 6 3.4982 -7.8004 3.2791 15 1 4.4353 -7.4323 3.6698 16 6 3.1977 -9.1436 3.3598 17 7 2.0568 -9.5920 2.8835 18 14 4.4112 -10.3266 4.1455 19 1 4.6497 -9.9270 5.5558 20 1 5.6933 -10.2902 3.3972 21 1 3.8551 -11.7031 4.1089 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6768 -0.2073 -2.1393 30 1 3.1300 -0.7215 -1.2490 31 1 -0.0302 -0.8379 2.1265 32 1 1.3252 -1.0570 3.3576 33 1 2.8282 -2.8132 3.1149 34 1 3.5927 -3.0807 1.5299 35 1 1.2367 -4.5504 2.5184 36 1 3.2685 -5.1343 3.7181 37 1 4.0323 -5.4016 2.1327 38 1 2.3428 -7.1394 1.6108 39 1 1.5784 -6.8726 3.1959 40 1 1.4265 -8.9777 2.4758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704157349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:22 Heat of formation + Delta-G solvation = -11.752985 kcal Electronic energy + Delta-G solvation = -15347.407765 eV Core-core repulsion = 12968.473484 eV Total energy + Delta-G solvation = -2378.934281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40421 -36.11311 -34.17487 -32.83588 -29.31515 -27.55377 -27.41959 -25.43600 -23.10019 -22.95181 -21.01580 -20.30302 -18.44992 -16.74239 -16.15886 -15.23127 -14.76748 -14.26008 -13.88277 -13.73560 -13.67170 -13.12396 -13.08101 -12.53367 -12.35315 -12.15284 -11.85316 -11.80014 -11.45818 -11.35638 -11.09588 -10.89058 -10.82730 -10.66246 -10.19150 -10.10541 -9.96874 -9.75837 -9.56879 -8.55015 -8.29750 -7.87895 -6.33399 -4.02037 3.45588 3.48007 3.66711 3.73445 4.33409 4.56651 4.66032 4.70507 4.87755 4.98301 5.10107 5.22638 5.37812 5.44547 5.45589 5.52710 5.56873 5.60977 5.68483 5.75489 5.80330 5.82790 5.90855 5.94902 5.98648 6.14028 6.22995 6.24789 6.25257 6.31898 6.42552 6.85275 7.29974 7.53352 7.72217 7.90659 8.27734 8.49432 8.91835 9.70492 11.07836 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.063933 B = 0.003796 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.854032 B = 7375.286013 C = 7412.486363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.139 4.139 6 H 0.100 0.900 7 C -0.185 4.185 8 C -0.137 4.137 9 H 0.111 0.889 10 C 0.089 3.911 11 N -0.691 5.691 12 C 0.073 3.927 13 C 0.012 3.988 14 C -0.603 4.603 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.913 5.913 18 Si 1.070 2.930 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.282 1.282 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.336 0.664 36 H 0.016 0.984 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.004 0.996 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 20.744 -4.685 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.158 4.158 6 H 0.118 0.882 7 C -0.222 4.222 8 C -0.156 4.156 9 H 0.129 0.871 10 C -0.041 4.041 11 N -0.322 5.322 12 C -0.056 4.056 13 C -0.025 4.025 14 C -0.642 4.642 15 H 0.066 0.934 16 C -0.189 4.189 17 N -0.549 5.549 18 Si 0.898 3.102 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.207 1.207 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.258 19.016 -4.941 19.688 hybrid contribution -0.274 1.911 0.634 2.032 sum -1.533 20.927 -4.307 21.420 Atomic orbital electron populations 1.22007 0.94808 1.01971 1.01423 1.20046 0.95200 0.94784 0.93798 1.21837 1.00902 0.95298 1.01458 1.21850 1.01135 1.00618 0.96137 1.22409 0.99118 0.97171 0.97059 0.88188 1.23321 0.98689 1.04154 0.95998 1.22443 1.01634 0.89409 1.02080 0.87060 1.21483 0.96775 0.88439 0.97358 1.60567 1.06452 1.04584 1.60581 1.22002 0.94964 0.93717 0.94870 1.19198 0.96139 0.90259 0.96933 1.22003 1.04953 0.94621 1.42655 0.93433 1.25852 0.99388 0.97464 0.96209 1.70767 1.08452 1.38904 1.36757 0.83536 0.74770 0.75970 0.75921 1.21516 1.21424 1.20739 0.92395 0.92878 0.92329 0.92717 0.92798 0.92726 0.92129 0.92998 0.92655 0.88375 0.89366 0.95914 0.91245 0.84730 0.96589 0.92233 0.96523 0.97743 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.07 37.16 0.26 -1.02 16 2 C -0.04 -0.36 0.88 -154.51 -0.14 -0.49 16 3 C -0.14 -1.12 8.46 37.16 0.31 -0.81 16 4 C -0.14 -1.36 8.31 37.16 0.31 -1.05 16 5 C -0.14 -1.48 4.87 -90.62 -0.44 -1.92 16 6 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 7 C -0.18 -2.01 9.21 -26.73 -0.25 -2.26 16 8 C -0.14 -1.73 4.80 -90.62 -0.43 -2.16 16 9 H 0.11 1.50 7.07 -51.93 -0.37 1.13 16 10 C 0.09 1.35 5.97 -3.83 -0.02 1.33 16 11 N -0.69 -12.81 6.50 -113.78 -0.74 -13.55 16 12 C 0.07 1.60 5.62 -3.82 -0.02 1.58 16 13 C 0.01 0.32 4.54 -27.88 -0.13 0.20 16 14 C -0.60 -17.77 9.11 -34.44 -0.31 -18.08 16 15 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 16 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 17 N -0.91 -28.66 13.65 55.43 0.76 -27.91 16 18 Si 1.07 25.79 29.90 -169.99 -5.08 20.70 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H 0.06 0.49 6.98 -51.93 -0.36 0.12 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.56 7.08 -51.93 -0.37 0.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.98 5.85 -51.93 -0.30 0.68 16 32 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 33 H 0.02 0.34 7.88 -51.93 -0.41 -0.07 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.34 6.01 8.73 -39.29 -0.34 5.67 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 39 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 40 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -30.67 316.94 -8.75 -39.41 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.50 Total: 0.89 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.95 Total: -24.33 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.02 Total: -41.46 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.67 -8.75 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.661 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds