Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 C 1.52999 * 109.47340 * 240.00331 * 2 1 3 5 5 C 1.52995 * 109.46920 * 119.99940 * 2 1 3 6 6 H 1.09001 * 115.55996 * 205.68960 * 5 2 1 7 7 C 1.53001 * 117.50342 * 351.38229 * 5 2 1 8 8 C 1.52998 * 60.00100 * 107.48753 * 7 5 2 9 9 H 1.09006 * 117.52010 * 252.52352 * 8 7 5 10 10 C 1.53004 * 117.49923 * 107.49249 * 8 7 5 11 11 N 1.46894 * 109.47161 * 116.37430 * 10 8 7 12 12 C 1.46898 * 110.99937 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47342 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 H 1.08993 * 109.47340 * 300.00078 * 1 2 3 23 23 H 1.09000 * 109.47003 * 60.00145 * 1 2 3 24 24 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47029 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47480 * 299.99988 * 3 2 1 27 27 H 1.09003 * 109.46467 * 60.00054 * 3 2 1 28 28 H 1.09003 * 109.46868 * 300.00176 * 4 2 1 29 29 H 1.09000 * 109.47462 * 59.99805 * 4 2 1 30 30 H 1.08992 * 109.46975 * 180.02562 * 4 2 1 31 31 H 1.08999 * 117.49477 * 359.97438 * 7 5 2 32 32 H 1.08990 * 117.50315 * 214.98122 * 7 5 2 33 33 H 1.09005 * 109.46750 * 356.38005 * 10 8 7 34 34 H 1.08993 * 109.46980 * 236.37920 * 10 8 7 35 35 H 1.00896 * 111.00538 * 303.96097 * 11 10 8 36 36 H 1.09002 * 109.47032 * 60.00278 * 12 11 10 37 37 H 1.09001 * 109.47520 * 300.00127 * 12 11 10 38 38 H 1.09002 * 109.46935 * 60.00090 * 13 12 11 39 39 H 1.08998 * 109.47061 * 300.00883 * 13 12 11 40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.0322 -0.4261 1.5906 7 6 1.0105 -1.1018 2.3151 8 6 1.6358 -2.1852 1.4342 9 1 1.0068 -2.6346 0.6657 10 6 2.6552 -3.1230 2.0842 11 7 2.1372 -4.4974 2.0664 12 6 3.0920 -5.4279 2.6833 13 6 2.5190 -6.8461 2.6457 14 6 3.4982 -7.8004 3.2791 15 1 4.4353 -7.4323 3.6698 16 6 3.1977 -9.1436 3.3598 17 7 2.0568 -9.5920 2.8835 18 14 4.4112 -10.3266 4.1455 19 1 4.6497 -9.9270 5.5558 20 1 5.6933 -10.2902 3.3972 21 1 3.8551 -11.7031 4.1089 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6768 -0.2073 -2.1393 30 1 3.1300 -0.7215 -1.2490 31 1 -0.0302 -0.8379 2.1265 32 1 1.3252 -1.0570 3.3576 33 1 2.8282 -2.8132 3.1149 34 1 3.5927 -3.0807 1.5299 35 1 1.2367 -4.5504 2.5184 36 1 3.2685 -5.1343 3.7181 37 1 4.0323 -5.4016 2.1327 38 1 2.3428 -7.1394 1.6108 39 1 1.5784 -6.8726 3.1959 40 1 1.4265 -8.9777 2.4758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704157349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -29.619297 kcal Electronic energy + Delta-G solvation = -15348.182506 eV Core-core repulsion = 12968.473484 eV Total energy + Delta-G solvation = -2379.709023 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29373 -37.62922 -35.68266 -34.50109 -31.17231 -28.32772 -28.11038 -27.07119 -25.01097 -23.78425 -22.84635 -21.47170 -19.25565 -18.92194 -17.33285 -16.51779 -15.96842 -15.65367 -15.42083 -14.98103 -14.87156 -14.55316 -14.46505 -13.77611 -13.48925 -13.34267 -13.15045 -12.87698 -12.71325 -12.52632 -12.25305 -12.13506 -12.00902 -11.90621 -11.84271 -11.65855 -11.43535 -10.87961 -10.75409 -10.57203 -10.54819 -9.41806 -8.72041 -6.42604 1.52223 1.61294 1.80877 2.55646 2.79750 3.13909 3.19425 3.70254 3.89314 3.96006 4.10686 4.17692 4.30152 4.35388 4.38827 4.43222 4.63356 4.65329 4.78918 4.80945 4.84301 4.86654 4.87516 4.93671 5.06884 5.10260 5.18082 5.19977 5.23353 5.32620 5.39045 5.40405 5.49586 5.56175 5.88580 6.11859 6.16389 6.39575 6.56516 7.40373 8.69285 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.063933 B = 0.003796 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.854032 B = 7375.286013 C = 7412.486363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.126 4.126 6 H 0.102 0.898 7 C -0.175 4.175 8 C -0.151 4.151 9 H 0.101 0.899 10 C 0.093 3.907 11 N -0.696 5.696 12 C 0.090 3.910 13 C 0.016 3.984 14 C -0.624 4.624 15 H 0.052 0.948 16 C -0.039 4.039 17 N -0.936 5.936 18 Si 1.121 2.879 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.282 1.282 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.339 0.661 36 H 0.018 0.982 37 H 0.056 0.944 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 22.146 -4.276 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.145 4.145 6 H 0.120 0.880 7 C -0.212 4.212 8 C -0.169 4.169 9 H 0.119 0.881 10 C -0.036 4.036 11 N -0.326 5.326 12 C -0.039 4.039 13 C -0.022 4.022 14 C -0.662 4.662 15 H 0.070 0.930 16 C -0.237 4.237 17 N -0.573 5.573 18 Si 0.941 3.059 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.207 1.207 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.523 20.461 -4.541 20.966 hybrid contribution -0.542 1.530 0.466 1.689 sum -1.065 21.992 -4.075 22.392 Atomic orbital electron populations 1.21996 0.94339 1.01523 1.02249 1.20087 0.95604 0.95410 0.92791 1.21811 1.00975 0.94255 1.02178 1.21845 1.00968 0.99908 0.96986 1.22494 0.99294 0.95148 0.97546 0.87951 1.23379 0.99407 1.02377 0.96013 1.22222 1.01888 0.89989 1.02850 0.88078 1.21499 0.97364 0.86839 0.97893 1.60479 1.05985 1.06086 1.60094 1.21642 0.95137 0.91911 0.95232 1.19098 0.95316 0.93007 0.94770 1.22444 1.05543 0.95556 1.42629 0.92997 1.27539 1.00232 0.99996 0.95894 1.70909 1.09402 1.38687 1.38302 0.82899 0.73094 0.73580 0.76292 1.19259 1.19301 1.20744 0.91750 0.91917 0.93399 0.92628 0.91839 0.92285 0.93715 0.91822 0.92900 0.87307 0.89132 0.95378 0.91616 0.84350 0.96395 0.92501 0.99026 0.99295 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.07 71.98 0.51 -1.76 16 2 C -0.04 -0.65 0.88 -52.18 -0.05 -0.70 16 3 C -0.13 -1.87 8.46 71.98 0.61 -1.26 16 4 C -0.14 -2.54 8.31 71.98 0.60 -1.94 16 5 C -0.13 -2.47 4.87 -10.79 -0.05 -2.53 16 6 H 0.10 1.99 8.11 -2.39 -0.02 1.97 16 7 C -0.18 -3.50 9.21 30.59 0.28 -3.22 16 8 C -0.15 -3.67 4.80 -10.79 -0.05 -3.73 16 9 H 0.10 2.70 7.07 -2.38 -0.02 2.69 16 10 C 0.09 2.76 5.97 86.31 0.51 3.27 16 11 N -0.70 -25.83 6.50 -513.89 -3.34 -29.17 16 12 C 0.09 3.98 5.62 86.31 0.49 4.46 16 13 C 0.02 0.85 4.54 29.85 0.14 0.99 16 14 C -0.62 -36.93 9.11 25.60 0.23 -36.70 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 16 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16 17 N -0.94 -59.71 13.65 21.45 0.29 -59.42 16 18 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H 0.06 0.93 6.98 -2.39 -0.02 0.91 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 0.86 7.08 -2.39 -0.02 0.84 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.94 7.29 -2.39 -0.02 0.93 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.95 5.85 -2.39 -0.01 1.94 16 32 H 0.09 1.79 8.03 -2.39 -0.02 1.78 16 33 H 0.03 0.81 7.88 -2.38 -0.02 0.79 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.34 12.21 8.73 -89.70 -0.78 11.42 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 39 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 40 H 0.26 16.56 7.22 -92.70 -0.67 15.89 16 Total: -1.00 -65.44 316.94 2.98 -62.47 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.29 Total: 17.98 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 3.68 Total: -44.98 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.05 Total: -88.59 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -65.44 2.98 -62.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.848 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds