Wall clock time and date at job start Mon Mar 30 2020 03:58:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53004 * 109.46889 * 2 1
4 4 C 1.52999 * 109.47340 * 240.00331 * 2 1 3
5 5 C 1.52995 * 109.46920 * 119.99940 * 2 1 3
6 6 H 1.09001 * 115.55996 * 205.68960 * 5 2 1
7 7 C 1.53001 * 117.50342 * 351.38229 * 5 2 1
8 8 C 1.52998 * 60.00100 * 107.48753 * 7 5 2
9 9 H 1.09006 * 117.52010 * 252.52352 * 8 7 5
10 10 C 1.53004 * 117.49923 * 107.49249 * 8 7 5
11 11 N 1.46894 * 109.47161 * 116.37430 * 10 8 7
12 12 C 1.46898 * 110.99937 * 179.97438 * 11 10 8
13 13 C 1.53005 * 109.47342 * 180.02562 * 12 11 10
14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11
15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12
16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12
17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13
18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14
20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14
21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14
22 22 H 1.08993 * 109.47340 * 300.00078 * 1 2 3
23 23 H 1.09000 * 109.47003 * 60.00145 * 1 2 3
24 24 H 1.08999 * 109.46825 * 179.97438 * 1 2 3
25 25 H 1.08992 * 109.47029 * 179.97438 * 3 2 1
26 26 H 1.08993 * 109.47480 * 299.99988 * 3 2 1
27 27 H 1.09003 * 109.46467 * 60.00054 * 3 2 1
28 28 H 1.09003 * 109.46868 * 300.00176 * 4 2 1
29 29 H 1.09000 * 109.47462 * 59.99805 * 4 2 1
30 30 H 1.08992 * 109.46975 * 180.02562 * 4 2 1
31 31 H 1.08999 * 117.49477 * 359.97438 * 7 5 2
32 32 H 1.08990 * 117.50315 * 214.98122 * 7 5 2
33 33 H 1.09005 * 109.46750 * 356.38005 * 10 8 7
34 34 H 1.08993 * 109.46980 * 236.37920 * 10 8 7
35 35 H 1.00896 * 111.00538 * 303.96097 * 11 10 8
36 36 H 1.09002 * 109.47032 * 60.00278 * 12 11 10
37 37 H 1.09001 * 109.47520 * 300.00127 * 12 11 10
38 38 H 1.09002 * 109.46935 * 60.00090 * 13 12 11
39 39 H 1.08998 * 109.47061 * 300.00883 * 13 12 11
40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 2.0400 -0.7212 1.2492
6 1 3.0322 -0.4261 1.5906
7 6 1.0105 -1.1018 2.3151
8 6 1.6358 -2.1852 1.4342
9 1 1.0068 -2.6346 0.6657
10 6 2.6552 -3.1230 2.0842
11 7 2.1372 -4.4974 2.0664
12 6 3.0920 -5.4279 2.6833
13 6 2.5190 -6.8461 2.6457
14 6 3.4982 -7.8004 3.2791
15 1 4.4353 -7.4323 3.6698
16 6 3.1977 -9.1436 3.3598
17 7 2.0568 -9.5920 2.8835
18 14 4.4112 -10.3266 4.1455
19 1 4.6497 -9.9270 5.5558
20 1 5.6933 -10.2902 3.3972
21 1 3.8551 -11.7031 4.1089
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 3.1299 1.4426 0.0005
26 1 1.6767 1.9564 -0.8899
27 1 1.6766 1.9563 0.8900
28 1 1.6767 -1.7488 -1.2493
29 1 1.6768 -0.2073 -2.1393
30 1 3.1300 -0.7215 -1.2490
31 1 -0.0302 -0.8379 2.1265
32 1 1.3252 -1.0570 3.3576
33 1 2.8282 -2.8132 3.1149
34 1 3.5927 -3.0807 1.5299
35 1 1.2367 -4.5504 2.5184
36 1 3.2685 -5.1343 3.7181
37 1 4.0323 -5.4016 2.1327
38 1 2.3428 -7.1394 1.6108
39 1 1.5784 -6.8726 3.1959
40 1 1.4265 -8.9777 2.4758
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000704157349.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:58:21
Heat of formation + Delta-G solvation = -29.619297 kcal
Electronic energy + Delta-G solvation = -15348.182506 eV
Core-core repulsion = 12968.473484 eV
Total energy + Delta-G solvation = -2379.709023 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.29373 -37.62922 -35.68266 -34.50109 -31.17231 -28.32772 -28.11038 -27.07119
-25.01097 -23.78425 -22.84635 -21.47170 -19.25565 -18.92194 -17.33285 -16.51779
-15.96842 -15.65367 -15.42083 -14.98103 -14.87156 -14.55316 -14.46505 -13.77611
-13.48925 -13.34267 -13.15045 -12.87698 -12.71325 -12.52632 -12.25305 -12.13506
-12.00902 -11.90621 -11.84271 -11.65855 -11.43535 -10.87961 -10.75409 -10.57203
-10.54819 -9.41806 -8.72041 -6.42604 1.52223 1.61294 1.80877 2.55646
2.79750 3.13909 3.19425 3.70254 3.89314 3.96006 4.10686 4.17692
4.30152 4.35388 4.38827 4.43222 4.63356 4.65329 4.78918 4.80945
4.84301 4.86654 4.87516 4.93671 5.06884 5.10260 5.18082 5.19977
5.23353 5.32620 5.39045 5.40405 5.49586 5.56175 5.88580 6.11859
6.16389 6.39575 6.56516 7.40373 8.69285
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.063933 B = 0.003796 C = 0.003777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 437.854032 B = 7375.286013 C = 7412.486363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.039 4.039
3 C -0.135 4.135
4 C -0.140 4.140
5 C -0.126 4.126
6 H 0.102 0.898
7 C -0.175 4.175
8 C -0.151 4.151
9 H 0.101 0.899
10 C 0.093 3.907
11 N -0.696 5.696
12 C 0.090 3.910
13 C 0.016 3.984
14 C -0.624 4.624
15 H 0.052 0.948
16 C -0.039 4.039
17 N -0.936 5.936
18 Si 1.121 2.879
19 H -0.268 1.268
20 H -0.268 1.268
21 H -0.282 1.282
22 H 0.064 0.936
23 H 0.062 0.938
24 H 0.047 0.953
25 H 0.055 0.945
26 H 0.063 0.937
27 H 0.058 0.942
28 H 0.044 0.956
29 H 0.063 0.937
30 H 0.052 0.948
31 H 0.109 0.891
32 H 0.090 0.910
33 H 0.028 0.972
34 H 0.065 0.935
35 H 0.339 0.661
36 H 0.018 0.982
37 H 0.056 0.944
38 H -0.009 1.009
39 H -0.011 1.011
40 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.989 22.146 -4.276 22.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.039 4.039
3 C -0.192 4.192
4 C -0.197 4.197
5 C -0.145 4.145
6 H 0.120 0.880
7 C -0.212 4.212
8 C -0.169 4.169
9 H 0.119 0.881
10 C -0.036 4.036
11 N -0.326 5.326
12 C -0.039 4.039
13 C -0.022 4.022
14 C -0.662 4.662
15 H 0.070 0.930
16 C -0.237 4.237
17 N -0.573 5.573
18 Si 0.941 3.059
19 H -0.193 1.193
20 H -0.193 1.193
21 H -0.207 1.207
22 H 0.083 0.917
23 H 0.081 0.919
24 H 0.066 0.934
25 H 0.074 0.926
26 H 0.082 0.918
27 H 0.077 0.923
28 H 0.063 0.937
29 H 0.082 0.918
30 H 0.071 0.929
31 H 0.127 0.873
32 H 0.109 0.891
33 H 0.046 0.954
34 H 0.084 0.916
35 H 0.156 0.844
36 H 0.036 0.964
37 H 0.075 0.925
38 H 0.010 0.990
39 H 0.007 0.993
40 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -0.523 20.461 -4.541 20.966
hybrid contribution -0.542 1.530 0.466 1.689
sum -1.065 21.992 -4.075 22.392
Atomic orbital electron populations
1.21996 0.94339 1.01523 1.02249 1.20087 0.95604 0.95410 0.92791
1.21811 1.00975 0.94255 1.02178 1.21845 1.00968 0.99908 0.96986
1.22494 0.99294 0.95148 0.97546 0.87951 1.23379 0.99407 1.02377
0.96013 1.22222 1.01888 0.89989 1.02850 0.88078 1.21499 0.97364
0.86839 0.97893 1.60479 1.05985 1.06086 1.60094 1.21642 0.95137
0.91911 0.95232 1.19098 0.95316 0.93007 0.94770 1.22444 1.05543
0.95556 1.42629 0.92997 1.27539 1.00232 0.99996 0.95894 1.70909
1.09402 1.38687 1.38302 0.82899 0.73094 0.73580 0.76292 1.19259
1.19301 1.20744 0.91750 0.91917 0.93399 0.92628 0.91839 0.92285
0.93715 0.91822 0.92900 0.87307 0.89132 0.95378 0.91616 0.84350
0.96395 0.92501 0.99026 0.99295 0.93533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.27 7.07 71.98 0.51 -1.76 16
2 C -0.04 -0.65 0.88 -52.18 -0.05 -0.70 16
3 C -0.13 -1.87 8.46 71.98 0.61 -1.26 16
4 C -0.14 -2.54 8.31 71.98 0.60 -1.94 16
5 C -0.13 -2.47 4.87 -10.79 -0.05 -2.53 16
6 H 0.10 1.99 8.11 -2.39 -0.02 1.97 16
7 C -0.18 -3.50 9.21 30.59 0.28 -3.22 16
8 C -0.15 -3.67 4.80 -10.79 -0.05 -3.73 16
9 H 0.10 2.70 7.07 -2.38 -0.02 2.69 16
10 C 0.09 2.76 5.97 86.31 0.51 3.27 16
11 N -0.70 -25.83 6.50 -513.89 -3.34 -29.17 16
12 C 0.09 3.98 5.62 86.31 0.49 4.46 16
13 C 0.02 0.85 4.54 29.85 0.14 0.99 16
14 C -0.62 -36.93 9.11 25.60 0.23 -36.70 16
15 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16
16 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16
17 N -0.94 -59.71 13.65 21.45 0.29 -59.42 16
18 Si 1.12 51.07 29.90 68.60 2.05 53.12 16
19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16
21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
22 H 0.06 0.93 6.98 -2.39 -0.02 0.91 16
23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
24 H 0.05 0.86 7.08 -2.39 -0.02 0.84 16
25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.04 0.94 7.29 -2.39 -0.02 0.93 16
29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
31 H 0.11 1.95 5.85 -2.39 -0.01 1.94 16
32 H 0.09 1.79 8.03 -2.39 -0.02 1.78 16
33 H 0.03 0.81 7.88 -2.38 -0.02 0.79 16
34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
35 H 0.34 12.21 8.73 -89.70 -0.78 11.42 16
36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16
38 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16
39 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16
40 H 0.26 16.56 7.22 -92.70 -0.67 15.89 16
Total: -1.00 -65.44 316.94 2.98 -62.47
By element:
Atomic # 1 Polarization: 17.69 SS G_CDS: 0.29 Total: 17.98 kcal
Atomic # 6 Polarization: -48.66 SS G_CDS: 3.68 Total: -44.98 kcal
Atomic # 7 Polarization: -85.54 SS G_CDS: -3.05 Total: -88.59 kcal
Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal
Total: -65.44 2.98 -62.47 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704157349.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.848 kcal
(2) G-P(sol) polarization free energy of solvation -65.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.595 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds