Wall clock time and date at job start Mon Mar 30 2020 03:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.53003 * 109.47319 * 240.00057 * 2 1 3 5 5 C 1.53001 * 109.47277 * 120.00052 * 2 1 3 6 6 H 1.09000 * 115.54459 * 307.23961 * 5 2 1 7 7 C 1.52990 * 117.50129 * 92.91378 * 5 2 1 8 8 C 1.52992 * 117.50189 * 161.53947 * 5 2 1 9 9 H 1.08996 * 117.50499 * 145.01516 * 8 5 2 10 10 C 1.53009 * 117.49837 * 359.97438 * 8 5 2 11 11 N 1.46900 * 109.47210 * 154.87587 * 10 8 5 12 12 C 1.46896 * 110.99971 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47273 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47281 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00127 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99951 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99706 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99977 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47174 * 89.99705 * 18 16 14 20 20 H 1.48501 * 109.46963 * 209.99772 * 18 16 14 21 21 H 1.48499 * 109.46986 * 329.99840 * 18 16 14 22 22 H 1.08994 * 109.47108 * 299.99955 * 1 2 3 23 23 H 1.09000 * 109.46809 * 60.00250 * 1 2 3 24 24 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47325 * 184.94836 * 3 2 1 26 26 H 1.09006 * 109.46873 * 304.94010 * 3 2 1 27 27 H 1.08999 * 109.47619 * 64.94057 * 3 2 1 28 28 H 1.09006 * 109.46713 * 277.41736 * 4 2 1 29 29 H 1.09000 * 109.46919 * 37.41382 * 4 2 1 30 30 H 1.08998 * 109.47159 * 157.41375 * 4 2 1 31 31 H 1.08997 * 117.50065 * 214.98253 * 7 5 2 32 32 H 1.09004 * 117.50016 * 359.97438 * 7 5 2 33 33 H 1.09005 * 109.46716 * 274.87259 * 10 8 5 34 34 H 1.08998 * 109.46741 * 34.87084 * 10 8 5 35 35 H 1.00907 * 110.99532 * 303.95002 * 11 10 8 36 36 H 1.09006 * 109.46833 * 299.99196 * 12 11 10 37 37 H 1.08997 * 109.47444 * 59.99558 * 12 11 10 38 38 H 1.09006 * 109.46451 * 299.99328 * 13 12 11 39 39 H 1.08997 * 109.47587 * 59.98900 * 13 12 11 40 40 H 0.97008 * 119.99683 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6356 -0.3640 2.1963 7 6 2.3406 -2.2165 1.1285 8 6 3.4891 -1.2119 1.2396 9 1 4.0385 -1.1774 2.1804 10 6 4.3173 -0.9442 -0.0189 11 7 5.7436 -0.9119 0.3312 12 6 6.5711 -0.6560 -0.8552 13 6 8.0468 -0.6302 -0.4518 14 6 8.8958 -0.3683 -1.6689 15 1 8.4296 -0.2340 -2.6338 16 6 10.2678 -0.3000 -1.5507 17 7 11.0088 -0.0719 -2.6131 18 14 11.0742 -0.5315 0.1183 19 1 11.3765 -1.9703 0.3267 20 1 12.3345 0.2520 0.1721 21 1 10.1525 -0.0601 1.1830 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1264 1.4438 -0.0886 26 1 1.6062 1.9812 -0.8425 27 1 1.7508 1.9302 0.9309 28 1 2.0361 -1.7972 -1.0746 29 1 1.3916 -0.4878 -2.0937 30 1 3.0557 -0.3926 -1.4693 31 1 2.1342 -2.8430 1.9962 32 1 2.1745 -2.6866 0.1591 33 1 4.1395 -1.7366 -0.7461 34 1 4.0265 0.0146 -0.4479 35 1 5.9236 -0.2286 1.0516 36 1 6.4091 -1.4461 -1.5885 37 1 6.2960 0.3051 -1.2897 38 1 8.2091 0.1597 0.2817 39 1 8.3216 -1.5914 -0.0174 40 1 11.9741 -0.0242 -2.5300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704157351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:25 Heat of formation + Delta-G solvation = 19.129567 kcal Electronic energy + Delta-G solvation = -15801.799126 eV Core-core repulsion = 13424.204013 eV Total energy + Delta-G solvation = -2377.595113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89257 -35.76943 -33.98103 -32.69091 -30.15772 -27.84799 -27.42410 -25.74838 -23.16607 -22.85252 -20.82207 -20.01069 -18.38783 -16.76565 -16.04764 -15.42159 -15.11900 -14.42608 -14.06351 -13.93833 -13.28813 -13.02349 -12.66295 -12.58675 -12.47728 -12.33595 -12.08056 -11.56240 -11.44253 -11.28449 -11.07610 -10.94625 -10.66711 -10.46607 -10.23941 -10.04292 -9.79083 -9.66424 -9.50536 -9.19676 -8.51340 -7.80212 -6.02394 -4.00531 3.34814 3.41365 3.46522 3.75455 4.46997 4.48386 4.56203 4.72521 4.79488 5.05037 5.09208 5.27427 5.32493 5.40098 5.48802 5.53554 5.60895 5.63790 5.74743 5.76202 5.81112 5.88410 5.89916 5.97403 6.05315 6.20726 6.23315 6.29742 6.32613 6.35994 6.43938 6.80884 7.18033 7.42008 7.65846 7.80151 7.95562 8.55579 9.01796 9.60223 11.10995 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047939 B = 0.004796 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.937890 B = 5836.223525 C = 6069.162248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 C -0.143 4.143 4 C -0.178 4.178 5 C -0.144 4.144 6 H 0.099 0.901 7 C -0.180 4.180 8 C -0.137 4.137 9 H 0.106 0.894 10 C 0.077 3.923 11 N -0.697 5.697 12 C 0.074 3.926 13 C -0.010 4.010 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.334 0.666 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.013 0.987 39 H 0.021 0.979 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.340 -0.245 7.432 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 C -0.200 4.200 4 C -0.235 4.235 5 C -0.162 4.162 6 H 0.117 0.883 7 C -0.216 4.216 8 C -0.155 4.155 9 H 0.124 0.876 10 C -0.052 4.052 11 N -0.328 5.328 12 C -0.054 4.054 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.082 -0.907 7.319 21.393 hybrid contribution 0.349 0.774 0.705 1.103 sum -19.733 -0.133 8.024 21.302 Atomic orbital electron populations 1.21833 0.94640 1.01578 1.01334 1.19990 0.95012 0.95035 0.93563 1.21927 1.01547 0.95132 1.01397 1.22821 1.02817 1.01214 0.96619 1.22471 0.98784 0.96217 0.98751 0.88286 1.23237 1.03452 0.91944 1.02990 1.22375 0.89489 1.03406 1.00253 0.87554 1.22216 0.87833 1.00140 0.94981 1.60615 1.04332 1.55406 1.12431 1.21932 0.94486 0.98313 0.90713 1.19547 0.91136 0.96765 0.97343 1.21083 0.91203 1.48987 0.94670 0.91138 1.25010 0.97339 0.94516 0.96572 1.69922 1.05400 1.50093 1.28953 0.86728 0.78710 0.78466 0.85071 1.20240 1.21517 1.18993 0.92946 0.92812 0.92715 0.92067 0.92766 0.92838 0.91555 0.93121 0.90153 0.89294 0.88137 0.90927 0.93531 0.84937 0.91863 0.96120 0.96888 0.96109 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.36 37.16 0.31 -0.86 16 2 C -0.04 -0.35 0.74 -154.51 -0.11 -0.47 16 3 C -0.14 -1.44 8.33 37.16 0.31 -1.13 16 4 C -0.18 -1.87 7.01 37.16 0.26 -1.61 16 5 C -0.14 -1.47 4.97 -90.63 -0.45 -1.92 16 6 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.18 -1.89 9.51 -26.74 -0.25 -2.14 16 8 C -0.14 -1.65 5.97 -90.62 -0.54 -2.19 16 9 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 10 C 0.08 1.08 3.79 -3.82 -0.01 1.06 16 11 N -0.70 -12.00 6.48 -113.77 -0.74 -12.74 16 12 C 0.07 1.52 5.62 -3.83 -0.02 1.50 16 13 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 14 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.69 5.99 -51.93 -0.31 0.38 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.69 4.70 -51.93 -0.24 0.44 16 29 H 0.05 0.49 7.93 -51.93 -0.41 0.08 16 30 H 0.08 0.94 4.36 -51.93 -0.23 0.72 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.05 5.61 -51.93 -0.29 0.76 16 33 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 34 H 0.05 0.64 3.45 -51.93 -0.18 0.46 16 35 H 0.33 5.45 8.73 -39.29 -0.34 5.11 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -30.26 302.32 -8.08 -38.34 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.93 Total: 1.53 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.06 Total: -21.71 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.04 Total: -40.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.26 -8.08 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.466 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds