Wall clock time and date at job start Mon Mar 30 2020 03:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.53003 * 109.47319 * 240.00057 * 2 1 3 5 5 C 1.53001 * 109.47277 * 120.00052 * 2 1 3 6 6 H 1.09000 * 115.54459 * 307.23961 * 5 2 1 7 7 C 1.52990 * 117.50129 * 92.91378 * 5 2 1 8 8 C 1.52992 * 117.50189 * 161.53947 * 5 2 1 9 9 H 1.08996 * 117.50499 * 145.01516 * 8 5 2 10 10 C 1.53009 * 117.49837 * 359.97438 * 8 5 2 11 11 N 1.46900 * 109.47210 * 154.87587 * 10 8 5 12 12 C 1.46896 * 110.99971 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47273 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47281 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00127 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99951 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99706 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99977 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47174 * 89.99705 * 18 16 14 20 20 H 1.48501 * 109.46963 * 209.99772 * 18 16 14 21 21 H 1.48499 * 109.46986 * 329.99840 * 18 16 14 22 22 H 1.08994 * 109.47108 * 299.99955 * 1 2 3 23 23 H 1.09000 * 109.46809 * 60.00250 * 1 2 3 24 24 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47325 * 184.94836 * 3 2 1 26 26 H 1.09006 * 109.46873 * 304.94010 * 3 2 1 27 27 H 1.08999 * 109.47619 * 64.94057 * 3 2 1 28 28 H 1.09006 * 109.46713 * 277.41736 * 4 2 1 29 29 H 1.09000 * 109.46919 * 37.41382 * 4 2 1 30 30 H 1.08998 * 109.47159 * 157.41375 * 4 2 1 31 31 H 1.08997 * 117.50065 * 214.98253 * 7 5 2 32 32 H 1.09004 * 117.50016 * 359.97438 * 7 5 2 33 33 H 1.09005 * 109.46716 * 274.87259 * 10 8 5 34 34 H 1.08998 * 109.46741 * 34.87084 * 10 8 5 35 35 H 1.00907 * 110.99532 * 303.95002 * 11 10 8 36 36 H 1.09006 * 109.46833 * 299.99196 * 12 11 10 37 37 H 1.08997 * 109.47444 * 59.99558 * 12 11 10 38 38 H 1.09006 * 109.46451 * 299.99328 * 13 12 11 39 39 H 1.08997 * 109.47587 * 59.98900 * 13 12 11 40 40 H 0.97008 * 119.99683 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6356 -0.3640 2.1963 7 6 2.3406 -2.2165 1.1285 8 6 3.4891 -1.2119 1.2396 9 1 4.0385 -1.1774 2.1804 10 6 4.3173 -0.9442 -0.0189 11 7 5.7436 -0.9119 0.3312 12 6 6.5711 -0.6560 -0.8552 13 6 8.0468 -0.6302 -0.4518 14 6 8.8958 -0.3683 -1.6689 15 1 8.4296 -0.2340 -2.6338 16 6 10.2678 -0.3000 -1.5507 17 7 11.0088 -0.0719 -2.6131 18 14 11.0742 -0.5315 0.1183 19 1 11.3765 -1.9703 0.3267 20 1 12.3345 0.2520 0.1721 21 1 10.1525 -0.0601 1.1830 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1264 1.4438 -0.0886 26 1 1.6062 1.9812 -0.8425 27 1 1.7508 1.9302 0.9309 28 1 2.0361 -1.7972 -1.0746 29 1 1.3916 -0.4878 -2.0937 30 1 3.0557 -0.3926 -1.4693 31 1 2.1342 -2.8430 1.9962 32 1 2.1745 -2.6866 0.1591 33 1 4.1395 -1.7366 -0.7461 34 1 4.0265 0.0146 -0.4479 35 1 5.9236 -0.2286 1.0516 36 1 6.4091 -1.4461 -1.5885 37 1 6.2960 0.3051 -1.2897 38 1 8.2091 0.1597 0.2817 39 1 8.3216 -1.5914 -0.0174 40 1 11.9741 -0.0242 -2.5300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704157351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:25 Heat of formation + Delta-G solvation = 0.506578 kcal Electronic energy + Delta-G solvation = -15802.606680 eV Core-core repulsion = 13424.204013 eV Total energy + Delta-G solvation = -2378.402667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77705 -37.25049 -35.15615 -34.52239 -31.97493 -28.84520 -28.21338 -27.17941 -24.73625 -23.72766 -22.40564 -21.28227 -19.22541 -18.95378 -17.18418 -16.55646 -16.27826 -16.14855 -15.27619 -15.04261 -14.90289 -14.49737 -14.08484 -13.78405 -13.49443 -13.24712 -13.14216 -12.99078 -12.87471 -12.38123 -12.31209 -12.03133 -11.84438 -11.72811 -11.65273 -11.42990 -11.42540 -11.36430 -10.79739 -10.75943 -10.49738 -9.18726 -8.30436 -6.35160 1.37616 1.38635 1.51558 2.36714 2.88454 3.05187 3.30207 3.69025 3.92333 3.93117 4.12962 4.26576 4.31546 4.46689 4.48409 4.53354 4.62739 4.71183 4.81166 4.83404 4.87336 4.88741 4.96219 5.00157 5.07940 5.11507 5.19725 5.24106 5.29089 5.37839 5.47268 5.48455 5.54145 5.59157 5.62776 6.17958 6.25944 6.55563 6.73600 7.29873 8.86316 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047939 B = 0.004796 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.937890 B = 5836.223525 C = 6069.162248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.143 4.143 4 C -0.178 4.178 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.174 4.174 8 C -0.152 4.152 9 H 0.104 0.896 10 C 0.081 3.919 11 N -0.697 5.697 12 C 0.087 3.913 13 C -0.004 4.004 14 C -0.535 4.535 15 H 0.031 0.969 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.247 1.247 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.341 0.659 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 -0.463 9.633 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.037 4.037 3 C -0.200 4.200 4 C -0.235 4.235 5 C -0.149 4.149 6 H 0.129 0.871 7 C -0.210 4.210 8 C -0.170 4.170 9 H 0.122 0.878 10 C -0.047 4.047 11 N -0.329 5.329 12 C -0.042 4.042 13 C -0.042 4.042 14 C -0.574 4.574 15 H 0.050 0.950 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.170 1.170 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.453 -1.124 9.526 23.500 hybrid contribution 0.711 0.852 -0.081 1.113 sum -20.742 -0.272 9.445 22.793 Atomic orbital electron populations 1.21800 0.93283 1.02002 1.01989 1.20015 0.96057 0.94624 0.92954 1.21921 1.00440 0.95531 1.02081 1.22797 1.01952 1.01346 0.97394 1.22533 0.96868 0.96087 0.99416 0.87084 1.23306 1.01915 0.92248 1.03574 1.22246 0.90148 1.05742 0.98909 0.87770 1.22242 0.86103 1.00215 0.96123 1.60534 1.05819 1.55517 1.11003 1.21599 0.93019 0.97769 0.91794 1.19436 0.92765 0.96649 0.95343 1.21415 0.92156 1.48904 0.94913 0.95047 1.26007 0.98015 0.94028 1.01066 1.70069 1.05978 1.51401 1.31692 0.85584 0.77858 0.78878 0.79845 1.19278 1.20823 1.17048 0.92108 0.92412 0.92406 0.93718 0.92331 0.91975 0.91458 0.92525 0.91850 0.88084 0.88119 0.91601 0.93113 0.84172 0.92860 0.96627 0.96179 0.96093 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.36 71.98 0.60 -1.34 16 2 C -0.04 -0.64 0.74 -52.18 -0.04 -0.68 16 3 C -0.14 -2.64 8.33 71.98 0.60 -2.04 16 4 C -0.18 -3.53 7.01 71.98 0.50 -3.02 16 5 C -0.13 -2.37 4.97 -10.80 -0.05 -2.42 16 6 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 7 C -0.17 -3.27 9.51 30.59 0.29 -2.97 16 8 C -0.15 -3.39 5.97 -10.80 -0.06 -3.46 16 9 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 10 C 0.08 2.21 3.79 86.31 0.33 2.54 16 11 N -0.70 -23.33 6.48 -513.87 -3.33 -26.66 16 12 C 0.09 3.60 5.62 86.30 0.49 4.09 16 13 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 14 C -0.54 -31.76 9.66 25.60 0.25 -31.51 16 15 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 16 C 0.01 0.34 5.47 84.66 0.46 0.80 16 17 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.96 45.27 27.47 68.60 1.88 47.15 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.97 5.99 -2.39 -0.01 0.96 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.31 4.70 -2.38 -0.01 1.29 16 29 H 0.06 1.03 7.93 -2.39 -0.02 1.01 16 30 H 0.06 1.47 4.36 -2.39 -0.01 1.46 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.90 5.61 -2.38 -0.01 1.89 16 33 H 0.07 1.87 6.71 -2.38 -0.02 1.86 16 34 H 0.05 1.37 3.45 -2.39 -0.01 1.37 16 35 H 0.34 10.63 8.73 -89.69 -0.78 9.85 16 36 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 39 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 40 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -64.82 302.32 2.51 -62.31 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.17 Total: 17.58 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.49 Total: -40.10 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.03 Total: -86.94 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -64.82 2.51 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.815 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds