Wall clock time and date at job start Mon Mar 30 2020 03:58:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52994 * 109.47303 * 2 1
4 4 C 1.53004 * 109.46614 * 240.00520 * 2 1 3
5 5 C 1.52996 * 109.47262 * 120.00580 * 2 1 3
6 6 H 1.09002 * 115.54951 * 154.41381 * 5 2 1
7 7 C 1.53000 * 117.50107 * 8.74169 * 5 2 1
8 8 C 1.53002 * 117.49888 * 300.08407 * 5 2 1
9 9 H 1.08999 * 117.49664 * 0.02562 * 8 5 2
10 10 C 1.52999 * 117.49968 * 215.00840 * 8 5 2
11 11 N 1.46899 * 109.47002 * 174.99730 * 10 8 5
12 12 C 1.46907 * 110.99724 * 179.97438 * 11 10 8
13 13 C 1.53001 * 109.46821 * 180.02562 * 12 11 10
14 14 C 1.50703 * 109.46791 * 180.02562 * 13 12 11
15 15 H 1.08001 * 120.00280 * 359.97438 * 14 13 12
16 16 C 1.37876 * 119.99890 * 180.02562 * 14 13 12
17 17 N 1.31513 * 120.00121 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00121 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47272 * 359.97438 * 18 16 14
20 20 H 1.48505 * 109.47266 * 119.99782 * 18 16 14
21 21 H 1.48505 * 109.47418 * 239.99920 * 18 16 14
22 22 H 1.09011 * 109.46778 * 299.99855 * 1 2 3
23 23 H 1.09002 * 109.47427 * 59.99357 * 1 2 3
24 24 H 1.09000 * 109.47374 * 179.97438 * 1 2 3
25 25 H 1.08994 * 109.47375 * 180.02562 * 3 2 1
26 26 H 1.09002 * 109.47404 * 300.00658 * 3 2 1
27 27 H 1.09005 * 109.47393 * 60.00055 * 3 2 1
28 28 H 1.09004 * 109.46624 * 299.99672 * 4 2 1
29 29 H 1.08998 * 109.47811 * 59.99764 * 4 2 1
30 30 H 1.09003 * 109.46750 * 180.02562 * 4 2 1
31 31 H 1.09008 * 117.49673 * 359.97438 * 7 5 2
32 32 H 1.08999 * 117.49959 * 144.99502 * 7 5 2
33 33 H 1.09002 * 109.46825 * 294.99320 * 10 8 5
34 34 H 1.08997 * 109.47412 * 54.99052 * 10 8 5
35 35 H 1.00898 * 111.00253 * 56.04616 * 11 10 8
36 36 H 1.09000 * 109.47185 * 300.00152 * 12 11 10
37 37 H 1.08992 * 109.47156 * 59.99882 * 12 11 10
38 38 H 1.09000 * 109.47313 * 300.00010 * 13 12 11
39 39 H 1.09003 * 109.47250 * 60.00447 * 13 12 11
40 40 H 0.96998 * 120.00288 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 -1.2494
5 6 2.0400 -0.7213 1.2491
6 1 3.0330 -1.1629 1.1645
7 6 1.0109 -1.4567 2.1100
8 6 1.6341 -0.1509 2.6096
9 1 1.0034 0.7380 2.6146
10 6 2.6531 -0.2438 3.7471
11 7 2.1333 0.4575 4.9285
12 6 3.0872 0.3885 6.0437
13 6 2.5118 1.1276 7.2534
14 6 3.4907 1.0574 8.3971
15 1 4.4291 0.5372 8.2737
16 6 3.1877 1.6563 9.6015
17 7 2.0449 2.2893 9.7521
18 14 4.4006 1.5686 11.0194
19 1 5.6018 0.8047 10.5968
20 1 4.8011 2.9431 11.4140
21 1 3.7630 0.8879 12.1750
22 1 -0.3633 0.5139 0.8901
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3634 -1.0277 -0.0005
25 1 3.1300 1.4424 -0.0005
26 1 1.6766 1.9564 -0.8899
27 1 1.6767 1.9563 0.8900
28 1 1.6765 -1.7489 -1.2493
29 1 1.6765 -0.2074 -2.1393
30 1 3.1299 -0.7216 -1.2492
31 1 -0.0297 -1.4262 1.7866
32 1 1.3268 -2.3820 2.5917
33 1 2.8277 -1.2911 3.9938
34 1 3.5901 0.2168 3.4341
35 1 1.2333 0.0909 5.1998
36 1 3.2645 -0.6545 6.3061
37 1 4.0274 0.8532 5.7469
38 1 2.3342 2.1706 6.9912
39 1 1.5718 0.6624 7.5501
40 1 1.8319 2.7110 10.5992
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000704157352.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:58:28
Heat of formation + Delta-G solvation = -7.671040 kcal
Electronic energy + Delta-G solvation = -15315.733371 eV
Core-core repulsion = 12936.976096 eV
Total energy + Delta-G solvation = -2378.757275 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.35268 -35.99629 -34.02227 -32.63102 -29.50514 -27.52961 -27.38680 -25.67034
-23.23745 -22.90885 -20.78703 -20.10061 -18.40640 -16.36398 -16.08827 -15.12594
-14.69934 -14.42065 -14.19493 -13.72644 -13.59899 -12.99493 -12.79844 -12.48657
-12.21027 -12.08824 -12.02335 -11.78211 -11.32222 -11.09432 -11.02907 -10.96148
-10.85696 -10.65776 -10.48885 -10.03010 -9.90044 -9.64471 -9.29769 -9.09384
-8.33551 -7.76919 -5.97855 -4.00284 3.32484 3.39654 3.43925 3.78577
4.37598 4.48929 4.69942 4.75477 4.93026 5.03061 5.14594 5.29493
5.38091 5.41518 5.50002 5.56330 5.62879 5.64796 5.72957 5.78923
5.86530 5.86823 5.94621 6.01537 6.03427 6.17949 6.27400 6.29214
6.37773 6.41912 6.50815 7.01221 7.53492 7.76592 7.86470 8.01049
8.11867 8.46249 9.07273 9.63387 11.13675
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.063960 B = 0.003781 C = 0.003762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 437.670162 B = 7403.525185 C = 7440.625748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.038 4.038
3 C -0.140 4.140
4 C -0.138 4.138
5 C -0.140 4.140
6 H 0.100 0.900
7 C -0.185 4.185
8 C -0.136 4.136
9 H 0.112 0.888
10 C 0.089 3.911
11 N -0.690 5.690
12 C 0.066 3.934
13 C 0.025 3.975
14 C -0.521 4.521
15 H 0.055 0.945
16 C 0.057 3.943
17 N -0.893 5.893
18 Si 0.893 3.107
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 H 0.058 0.942
23 H 0.052 0.948
24 H 0.057 0.943
25 H 0.054 0.946
26 H 0.050 0.950
27 H 0.060 0.940
28 H 0.053 0.947
29 H 0.053 0.947
30 H 0.054 0.946
31 H 0.098 0.902
32 H 0.088 0.912
33 H 0.022 0.978
34 H 0.069 0.931
35 H 0.336 0.664
36 H 0.014 0.986
37 H 0.057 0.943
38 H 0.025 0.975
39 H 0.014 0.986
40 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.021 -6.013 -19.972 20.956
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.038 4.038
3 C -0.197 4.197
4 C -0.195 4.195
5 C -0.158 4.158
6 H 0.118 0.882
7 C -0.222 4.222
8 C -0.155 4.155
9 H 0.130 0.870
10 C -0.041 4.041
11 N -0.320 5.320
12 C -0.063 4.063
13 C -0.013 4.013
14 C -0.559 4.559
15 H 0.073 0.927
16 C -0.144 4.144
17 N -0.533 5.533
18 Si 0.721 3.279
19 H -0.198 1.198
20 H -0.210 1.210
21 H -0.210 1.210
22 H 0.077 0.923
23 H 0.071 0.929
24 H 0.076 0.924
25 H 0.073 0.927
26 H 0.069 0.931
27 H 0.079 0.921
28 H 0.073 0.927
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.116 0.884
32 H 0.106 0.894
33 H 0.040 0.960
34 H 0.087 0.913
35 H 0.153 0.847
36 H 0.032 0.968
37 H 0.076 0.924
38 H 0.044 0.956
39 H 0.032 0.968
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -1.889 -5.295 -20.051 20.824
hybrid contribution 0.546 -0.988 1.167 1.624
sum -1.343 -6.283 -18.884 19.947
Atomic orbital electron populations
1.22009 0.94819 1.01658 1.01723 1.20042 0.95194 0.95164 0.93426
1.21850 1.01121 0.95036 1.01728 1.21840 1.00887 1.00108 0.96657
1.22405 0.99088 1.03303 0.91037 0.88224 1.23332 0.98659 0.96156
1.04050 1.22463 1.01622 0.97455 0.93935 0.87037 1.21485 0.96707
0.95714 0.90182 1.60578 1.06509 1.58810 1.06148 1.22153 0.95003
0.98038 0.91062 1.19077 0.95980 0.96130 0.90105 1.21227 1.03596
1.34268 0.96859 0.92723 1.25010 0.95366 0.95337 0.98726 1.69984
1.22435 1.35732 1.25122 0.86529 0.81318 0.77754 0.82348 1.19774
1.20963 1.21043 0.92281 0.92920 0.92416 0.92669 0.93050 0.92069
0.92746 0.92834 0.92734 0.88413 0.89380 0.96000 0.91304 0.84657
0.96792 0.92419 0.95631 0.96804 0.93059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.29 7.07 37.16 0.26 -1.03 16
2 C -0.04 -0.36 0.88 -154.51 -0.14 -0.49 16
3 C -0.14 -1.36 8.31 37.15 0.31 -1.05 16
4 C -0.14 -1.13 8.46 37.16 0.31 -0.82 16
5 C -0.14 -1.49 4.87 -90.62 -0.44 -1.93 16
6 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16
7 C -0.19 -2.03 9.22 -26.70 -0.25 -2.27 16
8 C -0.14 -1.72 4.80 -90.58 -0.43 -2.16 16
9 H 0.11 1.51 7.07 -51.93 -0.37 1.14 16
10 C 0.09 1.35 5.97 -3.83 -0.02 1.32 16
11 N -0.69 -12.80 6.50 -113.78 -0.74 -13.54 16
12 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16
13 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16
14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16
15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16
16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
17 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16
18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16
19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16
20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
22 H 0.06 0.57 7.07 -51.92 -0.37 0.20 16
23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
24 H 0.06 0.49 6.97 -51.93 -0.36 0.13 16
25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16
28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.10 0.99 5.85 -51.92 -0.30 0.68 16
32 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16
33 H 0.02 0.33 7.88 -51.93 -0.41 -0.08 16
34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
35 H 0.34 6.05 8.73 -39.29 -0.34 5.71 16
36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 318.27 15.07 4.80 4.80
Total: -1.00 -29.84 318.27 -8.76 -38.60
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -7.56 Total: 0.14 kcal
Atomic # 6 Polarization: -19.37 SS G_CDS: -0.97 Total: -20.35 kcal
Atomic # 7 Polarization: -40.10 SS G_CDS: 0.00 Total: -40.10 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -29.84 -8.76 -38.60 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704157352.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.929 kcal
(2) G-P(sol) polarization free energy of solvation -29.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.091 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds