Wall clock time and date at job start Mon Mar 30 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47303 * 2 1 4 4 C 1.53004 * 109.46614 * 240.00520 * 2 1 3 5 5 C 1.52996 * 109.47262 * 120.00580 * 2 1 3 6 6 H 1.09002 * 115.54951 * 154.41381 * 5 2 1 7 7 C 1.53000 * 117.50107 * 8.74169 * 5 2 1 8 8 C 1.53002 * 117.49888 * 300.08407 * 5 2 1 9 9 H 1.08999 * 117.49664 * 0.02562 * 8 5 2 10 10 C 1.52999 * 117.49968 * 215.00840 * 8 5 2 11 11 N 1.46899 * 109.47002 * 174.99730 * 10 8 5 12 12 C 1.46907 * 110.99724 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46821 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46791 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00280 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47272 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47266 * 119.99782 * 18 16 14 21 21 H 1.48505 * 109.47418 * 239.99920 * 18 16 14 22 22 H 1.09011 * 109.46778 * 299.99855 * 1 2 3 23 23 H 1.09002 * 109.47427 * 59.99357 * 1 2 3 24 24 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47404 * 300.00658 * 3 2 1 27 27 H 1.09005 * 109.47393 * 60.00055 * 3 2 1 28 28 H 1.09004 * 109.46624 * 299.99672 * 4 2 1 29 29 H 1.08998 * 109.47811 * 59.99764 * 4 2 1 30 30 H 1.09003 * 109.46750 * 180.02562 * 4 2 1 31 31 H 1.09008 * 117.49673 * 359.97438 * 7 5 2 32 32 H 1.08999 * 117.49959 * 144.99502 * 7 5 2 33 33 H 1.09002 * 109.46825 * 294.99320 * 10 8 5 34 34 H 1.08997 * 109.47412 * 54.99052 * 10 8 5 35 35 H 1.00898 * 111.00253 * 56.04616 * 11 10 8 36 36 H 1.09000 * 109.47185 * 300.00152 * 12 11 10 37 37 H 1.08992 * 109.47156 * 59.99882 * 12 11 10 38 38 H 1.09000 * 109.47313 * 300.00010 * 13 12 11 39 39 H 1.09003 * 109.47250 * 60.00447 * 13 12 11 40 40 H 0.96998 * 120.00288 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.0330 -1.1629 1.1645 7 6 1.0109 -1.4567 2.1100 8 6 1.6341 -0.1509 2.6096 9 1 1.0034 0.7380 2.6146 10 6 2.6531 -0.2438 3.7471 11 7 2.1333 0.4575 4.9285 12 6 3.0872 0.3885 6.0437 13 6 2.5118 1.1276 7.2534 14 6 3.4907 1.0574 8.3971 15 1 4.4291 0.5372 8.2737 16 6 3.1877 1.6563 9.6015 17 7 2.0449 2.2893 9.7521 18 14 4.4006 1.5686 11.0194 19 1 5.6018 0.8047 10.5968 20 1 4.8011 2.9431 11.4140 21 1 3.7630 0.8879 12.1750 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1393 30 1 3.1299 -0.7216 -1.2492 31 1 -0.0297 -1.4262 1.7866 32 1 1.3268 -2.3820 2.5917 33 1 2.8277 -1.2911 3.9938 34 1 3.5901 0.2168 3.4341 35 1 1.2333 0.0909 5.1998 36 1 3.2645 -0.6545 6.3061 37 1 4.0274 0.8532 5.7469 38 1 2.3342 2.1706 6.9912 39 1 1.5718 0.6624 7.5501 40 1 1.8319 2.7110 10.5992 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704157352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:28 Heat of formation + Delta-G solvation = -7.671040 kcal Electronic energy + Delta-G solvation = -15315.733371 eV Core-core repulsion = 12936.976096 eV Total energy + Delta-G solvation = -2378.757275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.35268 -35.99629 -34.02227 -32.63102 -29.50514 -27.52961 -27.38680 -25.67034 -23.23745 -22.90885 -20.78703 -20.10061 -18.40640 -16.36398 -16.08827 -15.12594 -14.69934 -14.42065 -14.19493 -13.72644 -13.59899 -12.99493 -12.79844 -12.48657 -12.21027 -12.08824 -12.02335 -11.78211 -11.32222 -11.09432 -11.02907 -10.96148 -10.85696 -10.65776 -10.48885 -10.03010 -9.90044 -9.64471 -9.29769 -9.09384 -8.33551 -7.76919 -5.97855 -4.00284 3.32484 3.39654 3.43925 3.78577 4.37598 4.48929 4.69942 4.75477 4.93026 5.03061 5.14594 5.29493 5.38091 5.41518 5.50002 5.56330 5.62879 5.64796 5.72957 5.78923 5.86530 5.86823 5.94621 6.01537 6.03427 6.17949 6.27400 6.29214 6.37773 6.41912 6.50815 7.01221 7.53492 7.76592 7.86470 8.01049 8.11867 8.46249 9.07273 9.63387 11.13675 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.063960 B = 0.003781 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.670162 B = 7403.525185 C = 7440.625748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.140 4.140 6 H 0.100 0.900 7 C -0.185 4.185 8 C -0.136 4.136 9 H 0.112 0.888 10 C 0.089 3.911 11 N -0.690 5.690 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.336 0.664 36 H 0.014 0.986 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -6.013 -19.972 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.158 4.158 6 H 0.118 0.882 7 C -0.222 4.222 8 C -0.155 4.155 9 H 0.130 0.870 10 C -0.041 4.041 11 N -0.320 5.320 12 C -0.063 4.063 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.889 -5.295 -20.051 20.824 hybrid contribution 0.546 -0.988 1.167 1.624 sum -1.343 -6.283 -18.884 19.947 Atomic orbital electron populations 1.22009 0.94819 1.01658 1.01723 1.20042 0.95194 0.95164 0.93426 1.21850 1.01121 0.95036 1.01728 1.21840 1.00887 1.00108 0.96657 1.22405 0.99088 1.03303 0.91037 0.88224 1.23332 0.98659 0.96156 1.04050 1.22463 1.01622 0.97455 0.93935 0.87037 1.21485 0.96707 0.95714 0.90182 1.60578 1.06509 1.58810 1.06148 1.22153 0.95003 0.98038 0.91062 1.19077 0.95980 0.96130 0.90105 1.21227 1.03596 1.34268 0.96859 0.92723 1.25010 0.95366 0.95337 0.98726 1.69984 1.22435 1.35732 1.25122 0.86529 0.81318 0.77754 0.82348 1.19774 1.20963 1.21043 0.92281 0.92920 0.92416 0.92669 0.93050 0.92069 0.92746 0.92834 0.92734 0.88413 0.89380 0.96000 0.91304 0.84657 0.96792 0.92419 0.95631 0.96804 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.07 37.16 0.26 -1.03 16 2 C -0.04 -0.36 0.88 -154.51 -0.14 -0.49 16 3 C -0.14 -1.36 8.31 37.15 0.31 -1.05 16 4 C -0.14 -1.13 8.46 37.16 0.31 -0.82 16 5 C -0.14 -1.49 4.87 -90.62 -0.44 -1.93 16 6 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 7 C -0.19 -2.03 9.22 -26.70 -0.25 -2.27 16 8 C -0.14 -1.72 4.80 -90.58 -0.43 -2.16 16 9 H 0.11 1.51 7.07 -51.93 -0.37 1.14 16 10 C 0.09 1.35 5.97 -3.83 -0.02 1.32 16 11 N -0.69 -12.80 6.50 -113.78 -0.74 -13.54 16 12 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 13 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.06 0.57 7.07 -51.92 -0.37 0.20 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.49 6.97 -51.93 -0.36 0.13 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.99 5.85 -51.92 -0.30 0.68 16 32 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 33 H 0.02 0.33 7.88 -51.93 -0.41 -0.08 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.34 6.05 8.73 -39.29 -0.34 5.71 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -29.84 318.27 -8.76 -38.60 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.56 Total: 0.14 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.97 Total: -20.35 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.00 Total: -40.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.84 -8.76 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.929 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds