Wall clock time and date at job start Mon Mar 30 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47303 * 2 1 4 4 C 1.53004 * 109.46614 * 240.00520 * 2 1 3 5 5 C 1.52996 * 109.47262 * 120.00580 * 2 1 3 6 6 H 1.09002 * 115.54951 * 154.41381 * 5 2 1 7 7 C 1.53000 * 117.50107 * 8.74169 * 5 2 1 8 8 C 1.53002 * 117.49888 * 300.08407 * 5 2 1 9 9 H 1.08999 * 117.49664 * 0.02562 * 8 5 2 10 10 C 1.52999 * 117.49968 * 215.00840 * 8 5 2 11 11 N 1.46899 * 109.47002 * 174.99730 * 10 8 5 12 12 C 1.46907 * 110.99724 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46821 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46791 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00280 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47272 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47266 * 119.99782 * 18 16 14 21 21 H 1.48505 * 109.47418 * 239.99920 * 18 16 14 22 22 H 1.09011 * 109.46778 * 299.99855 * 1 2 3 23 23 H 1.09002 * 109.47427 * 59.99357 * 1 2 3 24 24 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47404 * 300.00658 * 3 2 1 27 27 H 1.09005 * 109.47393 * 60.00055 * 3 2 1 28 28 H 1.09004 * 109.46624 * 299.99672 * 4 2 1 29 29 H 1.08998 * 109.47811 * 59.99764 * 4 2 1 30 30 H 1.09003 * 109.46750 * 180.02562 * 4 2 1 31 31 H 1.09008 * 117.49673 * 359.97438 * 7 5 2 32 32 H 1.08999 * 117.49959 * 144.99502 * 7 5 2 33 33 H 1.09002 * 109.46825 * 294.99320 * 10 8 5 34 34 H 1.08997 * 109.47412 * 54.99052 * 10 8 5 35 35 H 1.00898 * 111.00253 * 56.04616 * 11 10 8 36 36 H 1.09000 * 109.47185 * 300.00152 * 12 11 10 37 37 H 1.08992 * 109.47156 * 59.99882 * 12 11 10 38 38 H 1.09000 * 109.47313 * 300.00010 * 13 12 11 39 39 H 1.09003 * 109.47250 * 60.00447 * 13 12 11 40 40 H 0.96998 * 120.00288 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.0330 -1.1629 1.1645 7 6 1.0109 -1.4567 2.1100 8 6 1.6341 -0.1509 2.6096 9 1 1.0034 0.7380 2.6146 10 6 2.6531 -0.2438 3.7471 11 7 2.1333 0.4575 4.9285 12 6 3.0872 0.3885 6.0437 13 6 2.5118 1.1276 7.2534 14 6 3.4907 1.0574 8.3971 15 1 4.4291 0.5372 8.2737 16 6 3.1877 1.6563 9.6015 17 7 2.0449 2.2893 9.7521 18 14 4.4006 1.5686 11.0194 19 1 5.6018 0.8047 10.5968 20 1 4.8011 2.9431 11.4140 21 1 3.7630 0.8879 12.1750 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1393 30 1 3.1299 -0.7216 -1.2492 31 1 -0.0297 -1.4262 1.7866 32 1 1.3268 -2.3820 2.5917 33 1 2.8277 -1.2911 3.9938 34 1 3.5901 0.2168 3.4341 35 1 1.2333 0.0909 5.1998 36 1 3.2645 -0.6545 6.3061 37 1 4.0274 0.8532 5.7469 38 1 2.3342 2.1706 6.9912 39 1 1.5718 0.6624 7.5501 40 1 1.8319 2.7110 10.5992 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704157352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:28 Heat of formation + Delta-G solvation = -24.804880 kcal Electronic energy + Delta-G solvation = -15316.476350 eV Core-core repulsion = 12936.976096 eV Total energy + Delta-G solvation = -2379.500254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24402 -37.46651 -35.42830 -34.40796 -31.37742 -28.32312 -28.08216 -27.31069 -25.00969 -23.74297 -22.52565 -21.35946 -19.21792 -18.51232 -17.28730 -16.52680 -16.31277 -15.77485 -15.20251 -14.91282 -14.64881 -14.45458 -14.10912 -14.06330 -13.38371 -13.15695 -13.04649 -12.88430 -12.79641 -12.49667 -12.45478 -12.19178 -12.01524 -11.85093 -11.79400 -11.46944 -11.37649 -11.25887 -10.76740 -10.58519 -10.52392 -9.30297 -8.21290 -6.33135 1.40055 1.40747 1.54212 2.39999 2.84881 3.11975 3.28472 3.75721 3.93389 4.00779 4.15198 4.24508 4.33958 4.47030 4.50339 4.55573 4.67346 4.72684 4.82498 4.87147 4.89050 4.91876 4.96651 5.04845 5.09857 5.13440 5.21498 5.26672 5.35139 5.43038 5.44415 5.52677 5.59442 5.65620 5.77761 6.13464 6.27633 6.53706 6.84117 7.36247 8.91209 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.063960 B = 0.003781 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.670162 B = 7403.525185 C = 7440.625748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.127 4.127 6 H 0.102 0.898 7 C -0.176 4.176 8 C -0.150 4.150 9 H 0.101 0.899 10 C 0.093 3.907 11 N -0.696 5.696 12 C 0.083 3.917 13 C 0.031 3.969 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.339 0.661 36 H 0.018 0.982 37 H 0.057 0.943 38 H -0.006 1.006 39 H -0.008 1.008 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -6.995 -20.810 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.197 4.197 4 C -0.192 4.192 5 C -0.145 4.145 6 H 0.120 0.880 7 C -0.212 4.212 8 C -0.169 4.169 9 H 0.119 0.881 10 C -0.036 4.036 11 N -0.327 5.327 12 C -0.046 4.046 13 C -0.006 4.006 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.140 -6.287 -20.912 21.867 hybrid contribution 0.270 -0.664 1.381 1.556 sum -0.870 -6.951 -19.532 20.750 Atomic orbital electron populations 1.21997 0.94369 1.02052 1.01688 1.20083 0.95585 0.94837 0.93392 1.21844 1.00969 0.95366 1.01522 1.21813 1.00968 1.00253 0.96177 1.22488 0.99264 1.02307 0.90484 0.87968 1.23389 0.99366 0.95126 1.03345 1.22242 1.01888 0.98265 0.94490 0.88102 1.21495 0.97278 0.95423 0.89405 1.60492 1.06072 1.60055 1.06049 1.21780 0.95155 0.97299 0.90322 1.18931 0.95080 0.94641 0.91988 1.21644 1.04202 1.34623 0.97912 0.92157 1.26006 0.97365 0.94635 1.01856 1.70116 1.24459 1.36433 1.26177 0.85337 0.78875 0.78099 0.78337 1.18562 1.20263 1.20225 0.93369 0.91960 0.91776 0.92890 0.91882 0.93663 0.92309 0.91880 0.92630 0.87374 0.89128 0.95434 0.91634 0.84373 0.96397 0.92497 0.98746 0.98985 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.07 71.98 0.51 -1.80 16 2 C -0.04 -0.66 0.88 -52.18 -0.05 -0.71 16 3 C -0.14 -2.56 8.31 71.98 0.60 -1.96 16 4 C -0.13 -1.89 8.46 71.98 0.61 -1.28 16 5 C -0.13 -2.51 4.87 -10.79 -0.05 -2.56 16 6 H 0.10 2.00 8.11 -2.39 -0.02 1.98 16 7 C -0.18 -3.55 9.22 30.62 0.28 -3.27 16 8 C -0.15 -3.69 4.80 -10.77 -0.05 -3.75 16 9 H 0.10 2.73 7.07 -2.39 -0.02 2.71 16 10 C 0.09 2.77 5.97 86.30 0.51 3.28 16 11 N -0.70 -26.01 6.50 -513.88 -3.34 -29.35 16 12 C 0.08 3.67 5.62 86.30 0.49 4.15 16 13 C 0.03 1.71 5.23 29.85 0.16 1.87 16 14 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 17 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 18 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H 0.05 0.87 7.07 -2.38 -0.02 0.86 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.94 6.97 -2.39 -0.02 0.92 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.96 7.29 -2.38 -0.02 0.95 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 1.97 5.85 -2.38 -0.01 1.96 16 32 H 0.09 1.81 8.03 -2.39 -0.02 1.79 16 33 H 0.03 0.80 7.88 -2.39 -0.02 0.78 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.34 12.35 8.73 -89.70 -0.78 11.57 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.63 318.27 2.86 -60.77 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.19 Total: 16.47 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.70 Total: -37.27 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -3.06 Total: -86.85 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.63 2.86 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704157352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.962 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds