Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46860 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46819 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99937 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00238 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47358 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47353 * 240.00188 * 15 13 11 19 19 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 20 20 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 21 21 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 22 22 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 23 23 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 24 24 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 25 25 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 26 26 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 27 27 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 28 28 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 29 29 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 30 30 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 31 31 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 32 32 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 33 33 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 34 34 H 1.08997 * 109.46649 * 299.99858 * 9 8 7 35 35 H 1.09001 * 109.47170 * 60.00230 * 9 8 7 36 36 H 1.08994 * 109.47497 * 300.00218 * 10 9 8 37 37 H 1.09004 * 109.47471 * 60.00183 * 10 9 8 38 38 H 0.96994 * 120.00350 * 180.02562 * 14 13 11 39 39 H 1.08999 * 113.61825 * 89.16304 * 19 5 4 40 40 H 1.09009 * 113.61337 * 220.05752 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0859 -6.0210 -2.0403 10 6 5.3019 -6.9491 -2.0683 11 6 5.0792 -8.0381 -3.0859 12 1 4.1623 -8.0653 -3.6559 13 6 6.0461 -8.9998 -3.2892 14 7 7.1625 -8.9671 -2.5948 15 14 5.7704 -10.3493 -4.5511 16 1 4.4441 -10.1635 -5.1927 17 1 6.8343 -10.2850 -5.5851 18 1 5.8133 -11.6724 -3.8784 19 6 2.1448 -0.9318 -1.0601 20 1 -0.3633 0.3313 0.9729 21 1 -0.3633 0.6769 -0.7732 22 1 -0.3634 -1.0081 -0.1995 23 1 3.1943 1.3532 -0.1995 24 1 1.6416 2.0076 -0.7733 25 1 1.9600 1.8733 0.9728 26 1 1.4945 -1.1068 1.9156 27 1 3.1590 -0.6487 1.3496 28 1 1.1573 -2.6019 0.0035 29 1 4.2073 -2.3618 -0.2587 30 1 3.4590 -3.3802 0.9947 31 1 2.9553 -3.6482 -1.8971 32 1 5.1998 -4.3436 -1.2751 33 1 4.4507 -5.3617 -0.0218 34 1 3.1977 -6.5932 -1.7721 35 1 3.9471 -5.5747 -3.0250 36 1 6.1898 -6.3767 -2.3365 37 1 5.4412 -7.3954 -1.0836 38 1 7.8428 -9.6434 -2.7381 39 1 3.1575 -0.6534 -1.3517 40 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706530501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -16.990529 kcal Electronic energy + Delta-G solvation = -15142.222754 eV Core-core repulsion = 12763.061356 eV Total energy + Delta-G solvation = -2379.161398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95059 -36.17388 -33.54968 -31.83947 -30.26274 -27.66302 -26.83683 -25.87672 -24.54452 -22.10923 -20.81089 -19.83714 -18.41991 -16.30405 -15.93269 -15.10095 -14.73587 -14.59890 -14.41271 -13.94776 -13.55258 -13.40159 -12.92165 -12.61949 -12.21195 -12.06121 -11.98890 -11.75320 -11.54107 -11.30700 -10.89339 -10.77497 -10.63483 -10.53924 -10.43818 -10.16573 -10.00966 -9.64959 -9.27404 -8.99521 -8.31581 -8.09643 -5.96504 -3.98360 3.33528 3.40708 3.45529 4.24288 4.37215 4.48822 4.52183 4.59345 4.84662 5.01773 5.31876 5.38829 5.39290 5.40176 5.49319 5.58599 5.62345 5.67225 5.71447 5.77468 5.80777 5.82835 5.89706 5.96218 6.05635 6.06907 6.30939 6.37488 6.46083 6.77140 6.83053 7.18539 7.42479 7.70995 7.73403 7.88188 8.04427 8.47968 9.09231 9.65484 11.15070 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.071930 B = 0.003476 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.174775 B = 8053.673457 C = 8194.820353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.105 4.105 6 C 0.068 3.932 7 N -0.691 5.691 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.131 4.131 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.336 0.664 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 18.844 5.995 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.192 4.192 4 C -0.165 4.165 5 C -0.124 4.124 6 C -0.062 4.062 7 N -0.321 5.321 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.169 4.169 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.742 18.348 6.457 22.220 hybrid contribution 0.716 -0.244 -1.111 1.344 sum -10.026 18.103 5.346 21.374 Atomic orbital electron populations 1.21592 0.93294 1.02058 1.01560 1.21798 0.95482 0.94291 0.97504 1.21727 1.00470 0.95621 1.01420 1.23066 1.00943 0.95891 0.96576 1.22532 0.99516 0.93951 0.96379 1.21928 0.95315 0.91835 0.97113 1.60557 1.40858 1.19812 1.10909 1.22125 0.89717 0.94296 1.00870 1.21621 1.01165 0.95711 0.95997 1.19073 0.91976 0.93466 0.97121 1.21310 1.02775 1.10408 1.21080 0.92610 1.25041 0.95243 0.98021 0.96304 1.69975 1.07413 1.35192 1.41089 0.86537 0.78164 0.81917 0.81402 1.19711 1.21068 1.21026 1.23206 1.00865 0.96042 0.96742 0.92574 0.92584 0.92184 0.92639 0.92805 0.92758 0.91565 0.90237 0.88497 0.95677 0.91315 0.84662 0.95943 0.91584 0.92582 0.93716 0.96836 0.96588 0.93115 0.90373 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.07 37.16 0.34 -0.67 16 2 C -0.09 -0.78 1.39 -153.60 -0.21 -0.99 16 3 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 4 C -0.13 -1.16 6.79 -25.92 -0.18 -1.34 16 5 C -0.11 -1.11 3.54 -89.81 -0.32 -1.43 16 6 C 0.07 0.87 5.51 -3.82 -0.02 0.84 16 7 N -0.69 -10.58 6.50 -113.77 -0.74 -11.32 16 8 C 0.06 1.06 5.69 -3.82 -0.02 1.04 16 9 C -0.11 -2.30 5.41 -26.73 -0.14 -2.45 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.13 -1.27 6.76 -25.83 -0.17 -1.45 16 20 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 23 H 0.05 0.43 7.96 -51.93 -0.41 0.02 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 28 H 0.10 1.10 7.66 -51.93 -0.40 0.70 16 29 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.34 4.87 8.73 -39.29 -0.34 4.53 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 40 H 0.07 0.65 8.10 -51.92 -0.42 0.23 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -30.05 320.73 -8.93 -38.99 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.80 Total: -2.15 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.94 Total: -20.60 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.00 Total: -38.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.05 -8.93 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706530501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.995 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds