Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46860 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46819 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99937 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00238 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47358 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47353 * 240.00188 * 15 13 11 19 19 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 20 20 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 21 21 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 22 22 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 23 23 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 24 24 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 25 25 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 26 26 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 27 27 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 28 28 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 29 29 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 30 30 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 31 31 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 32 32 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 33 33 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 34 34 H 1.08997 * 109.46649 * 299.99858 * 9 8 7 35 35 H 1.09001 * 109.47170 * 60.00230 * 9 8 7 36 36 H 1.08994 * 109.47497 * 300.00218 * 10 9 8 37 37 H 1.09004 * 109.47471 * 60.00183 * 10 9 8 38 38 H 0.96994 * 120.00350 * 180.02562 * 14 13 11 39 39 H 1.08999 * 113.61825 * 89.16304 * 19 5 4 40 40 H 1.09009 * 113.61337 * 220.05752 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0859 -6.0210 -2.0403 10 6 5.3019 -6.9491 -2.0683 11 6 5.0792 -8.0381 -3.0859 12 1 4.1623 -8.0653 -3.6559 13 6 6.0461 -8.9998 -3.2892 14 7 7.1625 -8.9671 -2.5948 15 14 5.7704 -10.3493 -4.5511 16 1 4.4441 -10.1635 -5.1927 17 1 6.8343 -10.2850 -5.5851 18 1 5.8133 -11.6724 -3.8784 19 6 2.1448 -0.9318 -1.0601 20 1 -0.3633 0.3313 0.9729 21 1 -0.3633 0.6769 -0.7732 22 1 -0.3634 -1.0081 -0.1995 23 1 3.1943 1.3532 -0.1995 24 1 1.6416 2.0076 -0.7733 25 1 1.9600 1.8733 0.9728 26 1 1.4945 -1.1068 1.9156 27 1 3.1590 -0.6487 1.3496 28 1 1.1573 -2.6019 0.0035 29 1 4.2073 -2.3618 -0.2587 30 1 3.4590 -3.3802 0.9947 31 1 2.9553 -3.6482 -1.8971 32 1 5.1998 -4.3436 -1.2751 33 1 4.4507 -5.3617 -0.0218 34 1 3.1977 -6.5932 -1.7721 35 1 3.9471 -5.5747 -3.0250 36 1 6.1898 -6.3767 -2.3365 37 1 5.4412 -7.3954 -1.0836 38 1 7.8428 -9.6434 -2.7381 39 1 3.1575 -0.6534 -1.3517 40 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706530501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -34.179787 kcal Electronic energy + Delta-G solvation = -15142.968136 eV Core-core repulsion = 12763.061356 eV Total energy + Delta-G solvation = -2379.906780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72907 -37.59050 -35.46968 -33.44661 -31.51348 -28.50726 -28.24575 -26.64527 -26.03641 -23.81355 -22.17017 -21.20131 -19.13756 -18.49222 -17.12719 -16.57289 -16.10397 -15.76029 -15.50378 -15.02468 -14.81800 -14.46275 -14.20544 -13.70266 -13.58096 -13.46721 -13.14071 -12.83715 -12.67811 -12.65712 -12.46560 -12.29977 -12.21053 -11.68798 -11.53153 -11.44116 -11.35842 -11.13884 -10.89059 -10.69051 -10.56730 -9.37005 -8.20909 -6.32154 1.39859 1.40391 1.54173 2.40796 3.12088 3.20497 3.61315 3.73895 3.81676 3.93404 4.19685 4.33024 4.35901 4.50890 4.56030 4.69443 4.73365 4.79683 4.81306 4.90638 4.92264 4.96707 5.01225 5.04803 5.06593 5.10517 5.21233 5.23373 5.29633 5.35368 5.51213 5.58678 5.69523 5.73736 5.84860 6.08259 6.26759 6.50384 6.84944 7.37195 8.91387 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.071930 B = 0.003476 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.174775 B = 8053.673457 C = 8194.820353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.123 4.123 5 C -0.104 4.104 6 C 0.069 3.931 7 N -0.691 5.691 8 C 0.071 3.929 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.131 4.131 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.343 0.657 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.050 0.950 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 19.485 5.512 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.191 4.191 4 C -0.161 4.161 5 C -0.122 4.122 6 C -0.060 4.060 7 N -0.322 5.322 8 C -0.058 4.058 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.169 4.169 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.883 19.008 5.977 23.200 hybrid contribution 1.080 -0.420 -0.927 1.484 sum -10.803 18.588 5.049 22.084 Atomic orbital electron populations 1.21598 0.92673 1.01948 1.02265 1.21792 0.95944 0.94530 0.96362 1.21718 1.00296 0.95079 1.02053 1.23062 1.01307 0.95173 0.96567 1.22473 0.97997 0.93880 0.97883 1.21987 0.96650 0.91351 0.96031 1.60491 1.39161 1.20686 1.11888 1.21837 0.90820 0.93878 0.99280 1.21379 0.98414 0.95760 0.97496 1.18978 0.93339 0.93783 0.95205 1.21735 1.03148 1.11429 1.21798 0.92216 1.26023 0.94800 1.00719 0.98488 1.70102 1.08380 1.36328 1.42688 0.85359 0.78595 0.78341 0.78515 1.18561 1.20237 1.20290 1.23209 1.00896 0.95987 0.96797 0.91802 0.91960 0.92739 0.92876 0.92276 0.92044 0.91016 0.90066 0.89079 0.95445 0.91741 0.83947 0.96110 0.92180 0.92903 0.93105 0.99099 0.99076 0.92732 0.90612 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.07 71.98 0.65 -1.11 16 2 C -0.09 -1.32 1.39 -51.59 -0.07 -1.39 16 3 C -0.13 -1.81 9.20 71.98 0.66 -1.15 16 4 C -0.12 -2.05 6.79 31.12 0.21 -1.84 16 5 C -0.10 -2.07 3.54 -10.27 -0.04 -2.10 16 6 C 0.07 1.70 5.51 86.31 0.48 2.17 16 7 N -0.69 -20.57 6.50 -513.86 -3.34 -23.91 16 8 C 0.07 2.57 5.69 86.30 0.49 3.06 16 9 C -0.09 -3.99 5.41 30.59 0.17 -3.83 16 10 C 0.02 1.35 4.97 29.85 0.15 1.49 16 11 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 14 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 15 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.13 -2.36 6.76 31.18 0.21 -2.15 16 20 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 21 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.05 0.81 7.34 -2.39 -0.02 0.79 16 23 H 0.05 0.74 7.96 -2.39 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 27 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 28 H 0.09 1.96 7.66 -2.39 -0.02 1.94 16 29 H 0.03 0.67 7.87 -2.39 -0.02 0.65 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.34 9.52 8.73 -89.70 -0.78 8.74 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.08 1.40 7.75 -2.39 -0.02 1.39 16 40 H 0.07 1.20 8.10 -2.38 -0.02 1.18 16 Total: -1.00 -63.59 320.73 2.76 -60.83 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.18 Total: 11.94 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 3.60 Total: -38.22 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.06 Total: -81.66 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.59 2.76 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706530501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds