Wall clock time and date at job start Mon Mar 30 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46826 * 2 1 4 4 C 1.53000 * 109.47035 * 119.99855 * 2 1 3 5 5 C 1.53008 * 109.47056 * 67.05988 * 4 2 1 6 6 H 1.08997 * 108.78090 * 61.26866 * 5 4 2 7 7 N 1.47997 * 108.72187 * 302.91539 * 5 4 2 8 8 C 1.47998 * 114.63312 * 197.28609 * 7 5 4 9 9 C 1.50451 * 112.81932 * 318.09378 * 8 7 5 10 10 C 1.54304 * 108.49967 * 93.72823 * 9 8 7 11 11 C 1.45879 * 112.18580 * 281.46446 * 10 9 8 12 12 C 1.50444 * 108.80796 * 179.67354 * 5 4 2 13 13 H 1.08998 * 109.63662 * 94.57676 * 12 5 4 14 14 C 1.50705 * 109.63361 * 334.18052 * 12 5 4 15 15 H 1.07997 * 119.99856 * 354.15770 * 14 12 5 16 16 C 1.37879 * 119.99738 * 174.15919 * 14 12 5 17 17 N 1.31511 * 120.00187 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99756 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46784 * 120.00264 * 18 16 14 21 21 H 1.48495 * 109.47290 * 240.00053 * 18 16 14 22 22 H 1.08999 * 109.47143 * 282.06397 * 1 2 3 23 23 H 1.08997 * 109.47241 * 42.07071 * 1 2 3 24 24 H 1.09006 * 109.46991 * 162.07034 * 1 2 3 25 25 H 1.08999 * 109.47163 * 239.99779 * 2 1 3 26 26 H 1.09008 * 109.46676 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47015 * 299.99850 * 3 2 1 28 28 H 1.08996 * 109.46733 * 60.00184 * 3 2 1 29 29 H 1.08994 * 109.47019 * 307.05929 * 4 2 1 30 30 H 1.08998 * 109.46973 * 187.05399 * 4 2 1 31 31 H 1.00906 * 111.00421 * 324.03542 * 7 5 4 32 32 H 1.09001 * 108.81365 * 197.23226 * 8 7 5 33 33 H 1.09001 * 108.81213 * 78.95097 * 8 7 5 34 34 H 1.08993 * 109.63169 * 334.01892 * 9 8 7 35 35 H 1.09001 * 109.78952 * 213.52769 * 9 8 7 36 36 H 1.08989 * 108.94018 * 160.76313 * 10 9 8 37 37 H 1.09005 * 108.93926 * 42.15538 * 10 9 8 38 38 H 1.08998 * 108.93660 * 300.41809 * 11 10 9 39 39 H 1.09000 * 108.93947 * 181.81916 * 11 10 9 40 40 H 0.97001 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6799 -2.2059 1.1638 6 1 2.1663 -2.6351 0.2879 7 7 0.2138 -2.3306 1.0047 8 6 -0.3273 -3.6746 1.3067 9 6 0.5281 -4.7846 0.7592 10 6 1.5081 -5.2370 1.8619 11 6 2.6390 -4.3261 2.0015 12 6 2.1947 -2.9015 2.3944 13 1 1.4042 -2.9544 3.1430 14 6 3.3699 -2.1403 2.9520 15 1 3.7707 -1.2949 2.4127 16 6 3.9332 -2.5234 4.1508 17 7 3.4454 -3.5533 4.8073 18 14 5.3902 -1.5804 4.8416 19 1 5.7459 -0.4730 3.9184 20 1 5.0330 -1.0213 6.1702 21 1 6.5497 -2.4970 4.9859 22 1 -0.3633 0.2148 1.0050 23 1 -0.3633 0.7628 -0.6886 24 1 -0.3633 -0.9778 -0.3164 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.5772 -0.2855 2.1347 30 1 3.1227 -0.6132 1.3146 31 1 -0.2692 -1.6193 1.5329 32 1 -1.3259 -3.7561 0.8776 33 1 -0.4014 -3.7888 2.3882 34 1 1.0884 -4.4237 -0.1032 35 1 -0.1014 -5.6234 0.4620 36 1 1.8824 -6.2307 1.6166 37 1 0.9744 -5.2862 2.8111 38 1 3.1756 -4.2806 1.0538 39 1 3.3110 -4.7112 2.7684 40 1 3.8419 -3.8230 5.6504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709986357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:59 Heat of formation + Delta-G solvation = -10.667249 kcal Electronic energy + Delta-G solvation = -17073.644170 eV Core-core repulsion = 14694.756970 eV Total energy + Delta-G solvation = -2378.887200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.76983 -35.59962 -33.36451 -32.01146 -30.80783 -27.14157 -26.48748 -25.75037 -23.23954 -22.36572 -19.88166 -19.08869 -18.56242 -16.49025 -15.37582 -14.70397 -14.37815 -14.08364 -13.67978 -13.53907 -12.87122 -12.64865 -12.43431 -11.95114 -11.75799 -11.68899 -11.41508 -11.09652 -10.95041 -10.90102 -10.68220 -10.53352 -10.08417 -10.07339 -9.86648 -9.72472 -9.54882 -9.40989 -8.93777 -8.47289 -8.30473 -7.32031 -5.97698 -4.01930 3.29061 3.37933 3.40726 4.44546 4.96089 5.31025 5.45691 5.56757 5.60159 5.61825 5.67414 5.86491 6.08056 6.20396 6.25282 6.30225 6.32554 6.37143 6.38785 6.40736 6.53772 6.63722 6.72012 6.72583 6.81409 6.99868 7.02872 7.07996 7.17798 7.21949 7.37139 7.43611 7.69922 7.87126 7.99627 8.12332 8.19657 8.54594 9.03795 9.62786 11.09714 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.012342 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.580120 B = 2268.149534 C = 3457.740270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.101 3.899 6 H 0.057 0.943 7 N -0.696 5.696 8 C 0.064 3.936 9 C -0.118 4.118 10 C -0.109 4.109 11 C -0.110 4.110 12 C 0.031 3.969 13 H 0.028 0.972 14 C -0.514 4.514 15 H 0.071 0.929 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.884 3.116 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.336 0.664 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 2.637 -7.210 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.007 4.007 6 H 0.075 0.925 7 N -0.329 5.329 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.146 4.146 11 C -0.148 4.148 12 C 0.011 3.989 13 H 0.047 0.953 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.712 3.288 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.212 1.212 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.073 2.377 -7.683 9.508 hybrid contribution 0.947 0.383 1.586 1.886 sum -4.126 2.759 -6.097 7.862 Atomic orbital electron populations 1.22216 0.95639 1.02964 1.00048 1.21146 0.96029 0.94703 0.99406 1.21883 1.00574 0.97332 1.00559 1.22017 1.02097 0.94652 0.95372 1.21407 0.85467 0.95236 0.98588 0.92457 1.61118 1.06071 1.04009 1.61681 1.21516 0.96944 0.89816 0.98159 1.21396 0.98038 0.96836 0.99272 1.20614 0.97997 0.98481 0.97540 1.20530 0.96887 0.97779 0.99627 1.18942 0.96309 0.91427 0.92173 0.95346 1.21634 1.14608 1.13982 1.05041 0.91141 1.25016 0.96928 0.95004 0.97121 1.69972 1.41196 1.26097 1.15511 0.86669 0.83047 0.80083 0.79006 1.19740 1.21257 1.21220 0.93940 0.95266 0.88758 0.92232 0.93279 0.93849 0.93230 0.92603 0.89932 0.84554 0.92907 0.95403 0.91542 0.92948 0.94541 0.92925 0.95549 0.90639 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.71 37.16 0.29 -1.91 16 2 C -0.09 -1.49 2.89 -90.62 -0.26 -1.76 16 3 C -0.15 -2.09 9.11 37.16 0.34 -1.75 16 4 C -0.10 -1.96 3.20 -26.73 -0.09 -2.05 16 5 C 0.10 2.02 2.04 -68.38 -0.14 1.88 16 6 H 0.06 1.20 6.59 -51.93 -0.34 0.86 16 7 N -0.70 -12.17 3.81 -107.85 -0.41 -12.58 16 8 C 0.06 1.10 6.01 -4.49 -0.03 1.08 16 9 C -0.12 -2.02 5.63 -27.32 -0.15 -2.18 16 10 C -0.11 -2.17 5.30 -29.42 -0.16 -2.32 16 11 C -0.11 -2.55 4.57 -29.41 -0.13 -2.68 16 12 C 0.03 0.74 1.55 -92.36 -0.14 0.60 16 13 H 0.03 0.76 7.10 -51.93 -0.37 0.39 16 14 C -0.51 -13.43 7.66 -34.44 -0.26 -13.69 16 15 H 0.07 1.80 4.84 -52.49 -0.25 1.54 16 16 C 0.06 1.64 5.19 -17.82 -0.09 1.55 16 17 N -0.89 -25.23 11.95 55.43 0.66 -24.57 16 18 Si 0.88 21.06 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.04 0.61 7.09 -51.93 -0.37 0.24 16 23 H 0.03 0.38 8.01 -51.93 -0.42 -0.03 16 24 H 0.09 1.43 5.93 -51.93 -0.31 1.12 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.11 7.99 -51.93 -0.42 0.70 16 30 H 0.08 1.70 5.54 -51.93 -0.29 1.41 16 31 H 0.34 5.69 6.41 -39.29 -0.25 5.44 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.52 6.59 -51.93 -0.34 0.18 16 34 H 0.07 1.19 7.08 -51.93 -0.37 0.82 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.67 8.14 -51.94 -0.42 0.25 16 37 H 0.05 1.12 7.52 -51.93 -0.39 0.73 16 38 H 0.03 0.59 7.52 -51.93 -0.39 0.20 16 39 H 0.08 1.99 6.45 -51.93 -0.34 1.66 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -26.54 287.42 -8.20 -34.74 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.93 Total: 5.28 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -0.83 Total: -23.24 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.25 Total: -37.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.54 -8.20 -34.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.077 kcal (2) G-P(sol) polarization free energy of solvation -26.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds