Wall clock time and date at job start Mon Mar 30 2020 03:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46826 * 2 1 4 4 C 1.53000 * 109.47035 * 119.99855 * 2 1 3 5 5 C 1.53008 * 109.47056 * 67.05988 * 4 2 1 6 6 H 1.08997 * 108.78090 * 61.26866 * 5 4 2 7 7 N 1.47997 * 108.72187 * 302.91539 * 5 4 2 8 8 C 1.47998 * 114.63312 * 197.28609 * 7 5 4 9 9 C 1.50451 * 112.81932 * 318.09378 * 8 7 5 10 10 C 1.54304 * 108.49967 * 93.72823 * 9 8 7 11 11 C 1.45879 * 112.18580 * 281.46446 * 10 9 8 12 12 C 1.50444 * 108.80796 * 179.67354 * 5 4 2 13 13 H 1.08998 * 109.63662 * 94.57676 * 12 5 4 14 14 C 1.50705 * 109.63361 * 334.18052 * 12 5 4 15 15 H 1.07997 * 119.99856 * 354.15770 * 14 12 5 16 16 C 1.37879 * 119.99738 * 174.15919 * 14 12 5 17 17 N 1.31511 * 120.00187 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99756 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46784 * 120.00264 * 18 16 14 21 21 H 1.48495 * 109.47290 * 240.00053 * 18 16 14 22 22 H 1.08999 * 109.47143 * 282.06397 * 1 2 3 23 23 H 1.08997 * 109.47241 * 42.07071 * 1 2 3 24 24 H 1.09006 * 109.46991 * 162.07034 * 1 2 3 25 25 H 1.08999 * 109.47163 * 239.99779 * 2 1 3 26 26 H 1.09008 * 109.46676 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47015 * 299.99850 * 3 2 1 28 28 H 1.08996 * 109.46733 * 60.00184 * 3 2 1 29 29 H 1.08994 * 109.47019 * 307.05929 * 4 2 1 30 30 H 1.08998 * 109.46973 * 187.05399 * 4 2 1 31 31 H 1.00906 * 111.00421 * 324.03542 * 7 5 4 32 32 H 1.09001 * 108.81365 * 197.23226 * 8 7 5 33 33 H 1.09001 * 108.81213 * 78.95097 * 8 7 5 34 34 H 1.08993 * 109.63169 * 334.01892 * 9 8 7 35 35 H 1.09001 * 109.78952 * 213.52769 * 9 8 7 36 36 H 1.08989 * 108.94018 * 160.76313 * 10 9 8 37 37 H 1.09005 * 108.93926 * 42.15538 * 10 9 8 38 38 H 1.08998 * 108.93660 * 300.41809 * 11 10 9 39 39 H 1.09000 * 108.93947 * 181.81916 * 11 10 9 40 40 H 0.97001 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6799 -2.2059 1.1638 6 1 2.1663 -2.6351 0.2879 7 7 0.2138 -2.3306 1.0047 8 6 -0.3273 -3.6746 1.3067 9 6 0.5281 -4.7846 0.7592 10 6 1.5081 -5.2370 1.8619 11 6 2.6390 -4.3261 2.0015 12 6 2.1947 -2.9015 2.3944 13 1 1.4042 -2.9544 3.1430 14 6 3.3699 -2.1403 2.9520 15 1 3.7707 -1.2949 2.4127 16 6 3.9332 -2.5234 4.1508 17 7 3.4454 -3.5533 4.8073 18 14 5.3902 -1.5804 4.8416 19 1 5.7459 -0.4730 3.9184 20 1 5.0330 -1.0213 6.1702 21 1 6.5497 -2.4970 4.9859 22 1 -0.3633 0.2148 1.0050 23 1 -0.3633 0.7628 -0.6886 24 1 -0.3633 -0.9778 -0.3164 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.5772 -0.2855 2.1347 30 1 3.1227 -0.6132 1.3146 31 1 -0.2692 -1.6193 1.5329 32 1 -1.3259 -3.7561 0.8776 33 1 -0.4014 -3.7888 2.3882 34 1 1.0884 -4.4237 -0.1032 35 1 -0.1014 -5.6234 0.4620 36 1 1.8824 -6.2307 1.6166 37 1 0.9744 -5.2862 2.8111 38 1 3.1756 -4.2806 1.0538 39 1 3.3110 -4.7112 2.7684 40 1 3.8419 -3.8230 5.6504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709986357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:58 Heat of formation + Delta-G solvation = -24.558444 kcal Electronic energy + Delta-G solvation = -17074.246537 eV Core-core repulsion = 14694.756970 eV Total energy + Delta-G solvation = -2379.489568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38466 -37.01201 -35.23686 -33.52352 -32.62928 -28.60226 -27.95399 -27.36247 -25.03950 -23.88997 -21.47473 -20.61470 -20.18215 -18.41047 -16.94507 -16.46651 -16.09308 -15.53293 -15.33189 -14.94649 -14.41127 -14.22049 -14.04739 -13.45934 -13.34203 -13.05474 -13.01036 -12.86136 -12.58430 -12.48556 -12.28095 -12.05002 -11.75918 -11.55605 -11.40515 -11.30845 -11.17185 -11.07953 -10.61722 -10.38630 -10.30381 -8.87078 -8.05639 -6.15824 1.37303 1.40719 1.50317 2.44031 3.22912 3.48612 4.01178 4.12208 4.21652 4.28918 4.34896 4.40984 4.63225 4.72968 4.78413 4.89873 4.98058 5.00288 5.04434 5.05472 5.11661 5.17582 5.25265 5.28996 5.42823 5.44693 5.49896 5.55508 5.57289 5.61542 5.76784 5.79903 5.89155 5.97920 6.08128 6.28471 6.58115 6.75186 7.00408 7.51921 9.00310 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.012342 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.580120 B = 2268.149534 C = 3457.740270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.096 4.096 5 C 0.111 3.889 6 H 0.052 0.948 7 N -0.681 5.681 8 C 0.062 3.938 9 C -0.108 4.108 10 C -0.107 4.107 11 C -0.102 4.102 12 C 0.034 3.966 13 H -0.008 1.008 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.009 3.991 17 N -0.921 5.921 18 Si 0.942 3.058 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.340 0.660 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 3.514 -8.957 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.134 4.134 5 C 0.002 3.998 6 H 0.071 0.929 7 N -0.314 5.314 8 C -0.067 4.067 9 C -0.145 4.145 10 C -0.145 4.145 11 C -0.141 4.141 12 C 0.014 3.986 13 H 0.010 0.990 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.769 3.231 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.213 1.213 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.890 3.267 -9.443 11.599 hybrid contribution 1.187 0.088 2.133 2.442 sum -4.703 3.355 -7.310 9.318 Atomic orbital electron populations 1.22120 0.94294 1.03388 1.00419 1.21073 0.97083 0.95271 0.97305 1.21854 1.00393 0.96290 1.01574 1.21863 1.00680 0.94233 0.96639 1.21163 0.87073 0.95474 0.96128 0.92946 1.61174 1.04328 1.04612 1.61243 1.21634 0.98572 0.89460 0.97033 1.21341 0.97591 0.97918 0.97673 1.20537 0.97414 0.98539 0.97972 1.20405 0.97501 0.98004 0.98155 1.18888 0.94617 0.92186 0.92909 0.98950 1.22083 1.14981 1.14020 1.05019 0.90620 1.25747 0.99449 0.95889 0.97808 1.70112 1.42603 1.27645 1.15801 0.85736 0.80017 0.79042 0.78282 1.18646 1.21295 1.21287 0.94159 0.93390 0.89134 0.92264 0.93650 0.91727 0.93303 0.94080 0.92002 0.84046 0.89602 0.97706 0.91655 0.89692 0.93105 0.94918 0.95274 0.94620 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 7.71 71.98 0.55 -3.26 16 2 C -0.09 -2.64 2.89 -10.79 -0.03 -2.67 16 3 C -0.14 -3.78 9.11 71.98 0.66 -3.12 16 4 C -0.10 -3.61 3.20 30.60 0.10 -3.51 16 5 C 0.11 4.39 2.04 43.88 0.09 4.48 16 6 H 0.05 2.15 6.59 -2.39 -0.02 2.13 16 7 N -0.68 -22.82 3.81 -495.13 -1.89 -24.70 16 8 C 0.06 2.00 6.01 85.27 0.51 2.51 16 9 C -0.11 -3.47 5.63 30.21 0.17 -3.30 16 10 C -0.11 -4.26 5.30 28.85 0.15 -4.11 16 11 C -0.10 -4.85 4.57 28.86 0.13 -4.72 16 12 C 0.03 1.65 1.55 -11.92 -0.02 1.63 16 13 H -0.01 -0.43 7.10 -2.39 -0.02 -0.44 16 14 C -0.52 -27.89 7.66 25.60 0.20 -27.70 16 15 H 0.08 3.91 4.84 -2.91 -0.01 3.89 16 16 C 0.01 0.49 5.19 84.66 0.44 0.93 16 17 N -0.92 -54.17 11.95 21.45 0.26 -53.91 16 18 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H 0.04 1.07 7.09 -2.39 -0.02 1.05 16 23 H 0.05 1.10 8.01 -2.39 -0.02 1.08 16 24 H 0.09 2.47 5.93 -2.38 -0.01 2.46 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 30 H 0.06 2.55 5.54 -2.39 -0.01 2.54 16 31 H 0.34 11.07 6.41 -89.69 -0.57 10.50 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.00 0.17 6.59 -2.39 -0.02 0.16 16 34 H 0.06 2.16 7.08 -2.39 -0.02 2.14 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.41 7.52 -2.38 -0.02 1.39 16 38 H 0.03 1.32 7.52 -2.39 -0.02 1.30 16 39 H 0.04 1.95 6.45 -2.39 -0.02 1.93 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -58.13 287.42 3.77 -54.36 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.43 Total: 21.11 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 2.95 Total: -42.83 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.63 Total: -78.61 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -58.13 3.77 -54.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.800 kcal (2) G-P(sol) polarization free energy of solvation -58.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds