Wall clock time and date at job start Mon Mar 30 2020 03:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46815 * 2 1 4 4 C 1.53003 * 109.46950 * 240.00282 * 2 1 3 5 5 C 1.52997 * 109.47105 * 120.00083 * 2 1 3 6 6 C 1.52998 * 109.47231 * 60.47714 * 5 2 1 7 7 H 1.08997 * 109.46252 * 317.01719 * 6 5 2 8 8 N 1.46855 * 109.45254 * 76.98707 * 6 5 2 9 9 C 1.46840 * 111.19999 * 181.75511 * 8 6 5 10 10 C 1.53041 * 109.52125 * 298.25718 * 9 8 6 11 11 C 1.53121 * 109.27850 * 59.17879 * 10 9 8 12 12 C 1.53037 * 109.46437 * 197.03341 * 6 5 2 13 13 H 1.08991 * 109.50179 * 60.87727 * 12 6 5 14 14 C 1.50702 * 109.50198 * 300.75738 * 12 6 5 15 15 H 1.08001 * 120.00080 * 0.02562 * 14 12 6 16 16 C 1.37872 * 119.99548 * 179.97438 * 14 12 6 17 17 N 1.31509 * 120.00616 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99685 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46977 * 90.00455 * 18 16 14 20 20 H 1.48502 * 109.47071 * 209.99995 * 18 16 14 21 21 H 1.48494 * 109.47195 * 330.00022 * 18 16 14 22 22 H 1.08998 * 109.47320 * 300.00010 * 1 2 3 23 23 H 1.09003 * 109.46588 * 60.00226 * 1 2 3 24 24 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46892 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47427 * 300.00234 * 3 2 1 27 27 H 1.09003 * 109.46767 * 60.00129 * 3 2 1 28 28 H 1.08992 * 109.47083 * 317.99536 * 4 2 1 29 29 H 1.08998 * 109.47023 * 78.00215 * 4 2 1 30 30 H 1.09004 * 109.46241 * 198.00163 * 4 2 1 31 31 H 1.09001 * 109.46929 * 300.47999 * 5 2 1 32 32 H 1.09003 * 109.47086 * 180.48160 * 5 2 1 33 33 H 1.00900 * 110.99646 * 305.85273 * 8 6 5 34 34 H 1.08998 * 109.46200 * 178.24166 * 9 8 6 35 35 H 1.08995 * 109.46796 * 58.27161 * 9 8 6 36 36 H 1.09002 * 109.50226 * 299.23733 * 10 9 8 37 37 H 1.08999 * 109.53741 * 179.14259 * 10 9 8 38 38 H 1.09000 * 109.51880 * 182.43721 * 11 10 9 39 39 H 1.09001 * 109.57238 * 62.28588 * 11 10 9 40 40 H 0.97003 * 120.00784 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5399 -2.1672 1.2432 7 1 0.4937 -2.1883 0.9383 8 7 2.3406 -2.9577 0.2995 9 6 1.8653 -4.3455 0.2324 10 6 2.0087 -5.0022 1.6073 11 6 1.1912 -4.2119 2.6328 12 6 1.6737 -2.7589 2.6482 13 1 1.0669 -2.1813 3.3455 14 6 3.1173 -2.7126 3.0782 15 1 3.8651 -2.3018 2.4161 16 6 3.4831 -3.1937 4.3174 17 7 2.5725 -3.6934 5.1240 18 14 5.2725 -3.1357 4.8508 19 1 5.5404 -1.8511 5.5459 20 1 5.5507 -4.2653 5.7738 21 1 6.1487 -3.2448 3.6569 22 1 -0.3634 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.4412 -1.6152 -1.4226 29 1 1.9597 -0.0575 -2.1102 30 1 3.0826 -1.0046 -1.1049 31 1 1.6697 -0.2124 2.1392 32 1 3.1300 -0.7138 1.2535 33 1 2.3452 -2.5324 -0.6155 34 1 2.4577 -4.8974 -0.4973 35 1 0.8175 -4.3565 -0.0677 36 1 3.0582 -5.0040 1.9020 37 1 1.6419 -6.0275 1.5616 38 1 1.3251 -4.6508 3.6216 39 1 0.1361 -4.2426 2.3606 40 1 2.8299 -4.0322 5.9957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709989937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:13 Heat of formation + Delta-G solvation = -30.642138 kcal Electronic energy + Delta-G solvation = -17140.488444 eV Core-core repulsion = 14760.735068 eV Total energy + Delta-G solvation = -2379.753376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43516 -37.61725 -34.75772 -32.35738 -32.03082 -28.32047 -28.10758 -27.52534 -26.46915 -23.66056 -22.40419 -20.32421 -19.56476 -17.81095 -17.14407 -16.42216 -15.76541 -15.49372 -15.25043 -14.81514 -14.48748 -14.34755 -13.82889 -13.62107 -13.29368 -13.14031 -12.97600 -12.76902 -12.59984 -12.48024 -12.36784 -12.13693 -11.91437 -11.73862 -11.50766 -11.39352 -11.24569 -11.03770 -10.72357 -10.30753 -10.21096 -8.89124 -7.93637 -5.99120 1.42069 1.44004 1.53722 2.52142 3.33433 3.61125 3.95334 4.03974 4.07161 4.36965 4.39552 4.56846 4.57751 4.69701 4.75620 4.81280 4.88149 4.90586 4.96136 4.98641 5.01480 5.09837 5.12968 5.20361 5.22696 5.27540 5.47633 5.53703 5.55165 5.60266 5.66063 5.71246 5.77651 5.97478 6.21221 6.46946 6.66561 6.98267 7.09214 7.64272 9.11533 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.010057 C = 0.008596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.524946 B = 2783.402112 C = 3256.470151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.085 4.085 6 C 0.110 3.890 7 H 0.020 0.980 8 N -0.691 5.691 9 C 0.070 3.930 10 C -0.097 4.097 11 C -0.112 4.112 12 C 0.046 3.954 13 H -0.015 1.015 14 C -0.464 4.464 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.929 5.929 18 Si 0.941 3.059 19 H -0.282 1.282 20 H -0.292 1.292 21 H -0.271 1.271 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.346 0.654 34 H 0.079 0.921 35 H 0.021 0.979 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 5.217 -12.674 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.123 4.123 6 C 0.001 3.999 7 H 0.037 0.963 8 N -0.331 5.331 9 C -0.060 4.060 10 C -0.135 4.135 11 C -0.150 4.150 12 C 0.028 3.972 13 H 0.003 0.997 14 C -0.503 4.503 15 H 0.074 0.926 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.768 3.232 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.196 1.196 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.109 5.018 -12.083 13.253 hybrid contribution 0.016 -0.192 0.683 0.709 sum -2.093 4.825 -11.401 12.555 Atomic orbital electron populations 1.21933 0.94651 1.01255 1.01839 1.20646 0.95697 0.96015 0.94985 1.21820 1.00878 0.94582 1.01897 1.22050 1.01045 0.99874 0.97043 1.21527 1.00388 0.93826 0.96530 1.21382 0.92464 0.92760 0.93291 0.96281 1.60468 1.57004 1.02135 1.13535 1.21782 0.96988 0.90362 0.96850 1.21337 1.00174 0.96942 0.95037 1.21485 0.94723 0.99249 0.99528 1.18778 0.95354 0.92003 0.91113 0.99656 1.21246 0.93734 1.36414 0.98884 0.92605 1.25640 0.99952 0.96453 0.97394 1.70021 1.33937 1.43954 1.09217 0.85815 0.82428 0.77038 0.77891 1.20791 1.21817 1.19557 0.93407 0.91091 0.93563 0.92938 0.91104 0.93315 0.92737 0.90806 0.92130 0.94041 0.92631 0.82629 0.90265 0.96057 0.93549 0.92945 0.92482 0.96499 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.10 71.98 0.58 -2.96 16 2 C -0.07 -1.99 0.80 -52.18 -0.04 -2.03 16 3 C -0.13 -3.16 8.40 71.98 0.60 -2.56 16 4 C -0.14 -3.36 6.87 71.98 0.49 -2.87 16 5 C -0.08 -3.12 3.39 30.59 0.10 -3.02 16 6 C 0.11 4.46 1.87 44.94 0.08 4.54 16 7 H 0.02 0.77 5.74 -2.39 -0.01 0.75 16 8 N -0.69 -25.70 6.02 -491.69 -2.96 -28.66 16 9 C 0.07 2.48 6.55 86.33 0.57 3.04 16 10 C -0.10 -4.15 5.84 30.65 0.18 -3.97 16 11 C -0.11 -5.50 5.32 30.67 0.16 -5.33 16 12 C 0.05 2.35 2.07 -11.49 -0.02 2.32 16 13 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 14 C -0.46 -25.44 6.48 25.60 0.17 -25.28 16 15 H 0.06 3.09 6.77 -2.91 -0.02 3.07 16 16 C 0.00 0.07 5.30 84.65 0.45 0.52 16 17 N -0.93 -55.36 11.32 21.44 0.24 -55.12 16 18 Si 0.94 45.49 29.54 68.60 2.03 47.52 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.27 6.11 -2.39 -0.01 1.25 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.29 6.30 -2.39 -0.02 1.28 16 29 H 0.07 1.38 8.01 -2.39 -0.02 1.36 16 30 H 0.06 1.55 7.27 -2.39 -0.02 1.53 16 31 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 32 H 0.05 2.24 7.23 -2.39 -0.02 2.22 16 33 H 0.35 10.71 3.72 -89.69 -0.33 10.38 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 2.25 7.35 -2.39 -0.02 2.23 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 3.21 6.04 -2.39 -0.01 3.19 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -61.27 291.47 3.29 -57.98 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.65 Total: 15.87 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.33 Total: -37.59 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.72 Total: -83.78 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -61.27 3.29 -57.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.338 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds