Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 108.85046 * 2 1 4 4 C 1.54063 * 108.87915 * 241.53685 * 2 1 3 5 5 C 1.54066 * 112.81859 * 197.50684 * 4 2 1 6 6 C 1.50474 * 112.49908 * 318.28139 * 5 4 2 7 7 C 1.54239 * 108.52902 * 94.14382 * 6 5 4 8 8 C 1.45542 * 112.40185 * 280.02236 * 7 6 5 9 9 C 1.50479 * 108.87649 * 118.55687 * 2 1 3 10 10 H 1.09000 * 109.62581 * 95.03149 * 9 2 1 11 11 N 1.46893 * 109.62831 * 334.64300 * 9 2 1 12 12 C 1.46904 * 110.99624 * 166.51722 * 11 9 2 13 13 C 1.50706 * 109.47096 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00060 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00233 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46931 * 60.00143 * 17 15 13 19 19 H 1.48498 * 109.47204 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47070 * 300.00264 * 17 15 13 21 21 H 1.09002 * 109.47107 * 307.54319 * 1 2 3 22 22 H 1.09000 * 109.47018 * 187.54900 * 1 2 3 23 23 H 1.08998 * 109.47299 * 67.54977 * 1 2 3 24 24 H 1.08999 * 109.47296 * 46.11323 * 3 2 1 25 25 H 1.08996 * 109.47079 * 166.11085 * 3 2 1 26 26 H 1.09000 * 109.47021 * 286.11200 * 3 2 1 27 27 H 1.09006 * 108.81033 * 318.36651 * 4 2 1 28 28 H 1.08993 * 108.81304 * 76.64306 * 4 2 1 29 29 H 1.09000 * 108.88063 * 197.50698 * 5 4 2 30 30 H 1.09001 * 108.80114 * 78.99977 * 5 4 2 31 31 H 1.09003 * 109.62845 * 334.43348 * 6 5 4 32 32 H 1.08996 * 109.79159 * 213.95254 * 6 5 4 33 33 H 1.09003 * 108.89635 * 159.27213 * 7 6 5 34 34 H 1.08996 * 108.89553 * 40.77757 * 7 6 5 35 35 H 1.08993 * 108.89954 * 301.17975 * 8 7 6 36 36 H 1.09006 * 108.89229 * 182.68851 * 8 7 6 37 37 H 1.00902 * 111.00327 * 42.56632 * 11 9 2 38 38 H 1.09001 * 109.46991 * 299.99584 * 12 11 9 39 39 H 1.08997 * 109.47544 * 59.99608 * 12 11 9 40 40 H 0.96998 * 120.00504 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4480 0.0000 4 6 2.0285 -0.6948 -1.2815 5 6 3.5033 -1.1309 -1.1897 6 6 4.3715 -0.0913 -0.5342 7 6 4.4788 -0.4193 0.9691 8 6 3.3098 0.0190 1.7172 9 6 2.0169 -0.6806 1.2506 10 1 2.2205 -1.7306 1.0404 11 7 0.9935 -0.5768 2.2993 12 6 1.2867 -1.4886 3.4131 13 6 0.2174 -1.3548 4.4667 14 1 -0.5980 -0.6614 4.3234 15 6 0.2804 -2.1176 5.6135 16 7 1.2731 -2.9624 5.7877 17 14 -1.0446 -1.9512 6.9198 18 1 -2.3646 -2.2945 6.3325 19 1 -0.7489 -2.8739 8.0451 20 1 -1.0738 -0.5533 7.4198 21 1 -0.3633 0.6262 0.8148 22 1 -0.3633 -1.0188 0.1350 23 1 -0.3634 0.3924 -0.9498 24 1 1.4676 2.0220 0.7406 25 1 3.0858 1.4695 0.2467 26 1 1.8719 1.8840 -0.9873 27 1 1.4125 -1.5748 -1.4666 28 1 1.9167 -0.0076 -2.1201 29 1 3.8784 -1.3203 -2.1955 30 1 3.5614 -2.0537 -0.6124 31 1 3.9234 0.8940 -0.6629 32 1 5.3645 -0.1032 -0.9834 33 1 5.3627 0.0724 1.3754 34 1 4.5905 -1.4969 1.0881 35 1 3.1937 1.0954 1.5920 36 1 3.4661 -0.1968 2.7742 37 1 0.0726 -0.7485 1.9242 38 1 1.3084 -2.5149 3.0464 39 1 2.2555 -1.2363 3.8440 40 1 1.3172 -3.4993 6.5944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719187518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = 8.002343 kcal Electronic energy + Delta-G solvation = -16834.371011 eV Core-core repulsion = 14456.293385 eV Total energy + Delta-G solvation = -2378.077626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17784 -34.93821 -33.68503 -32.41663 -30.79765 -27.40141 -27.11571 -26.08398 -23.50249 -22.24028 -21.17768 -19.80989 -17.62514 -16.52884 -15.64661 -15.36300 -14.49934 -14.24804 -14.16715 -13.67090 -13.00191 -12.74766 -12.57376 -12.34305 -12.23573 -11.91616 -11.73048 -11.27260 -11.16320 -10.91180 -10.80426 -10.64365 -10.48152 -10.27218 -10.14400 -9.99787 -9.81275 -9.49455 -9.27152 -9.05403 -8.41767 -7.13461 -5.98473 -4.00020 3.35701 3.39404 3.42617 4.46372 4.85591 4.90669 5.03357 5.23629 5.30772 5.36738 5.40007 5.47949 5.60070 5.66150 5.83486 5.88813 5.96657 6.00705 6.03239 6.15723 6.24556 6.26404 6.30778 6.33214 6.45626 6.53429 6.60861 6.63445 6.67171 6.74800 6.88479 7.01504 7.39066 7.52419 7.85517 8.22585 8.52166 8.73744 9.09972 9.64602 11.12553 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039698 B = 0.006881 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.152194 B = 4068.314892 C = 4401.155006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.163 4.163 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.139 4.139 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.104 3.896 10 H 0.028 0.972 11 N -0.690 5.690 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.333 0.667 38 H -0.018 1.018 39 H 0.029 0.971 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 5.662 -13.539 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 C -0.219 4.219 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.175 4.175 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.007 4.007 10 H 0.046 0.954 11 N -0.324 5.324 12 C 0.067 3.933 13 C -0.552 4.552 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.000 1.000 39 H 0.047 0.953 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.070 6.057 -13.094 14.990 hybrid contribution -0.893 -1.041 0.441 1.440 sum 3.177 5.016 -12.653 13.977 Atomic orbital electron populations 1.21969 0.95169 1.01780 1.01398 1.20292 0.95304 0.95864 0.94269 1.22730 1.03120 0.95570 1.00487 1.22011 0.95616 0.99786 0.96882 1.21296 0.94904 0.99249 0.99921 1.21790 0.99011 1.00958 0.95782 1.20471 0.98428 1.01345 0.94857 1.20757 0.93578 1.01839 1.00630 1.21039 0.92919 0.96355 0.90345 0.95390 1.60831 1.03965 1.58167 1.09415 1.19547 0.97407 0.88443 0.87882 1.21181 1.09164 1.22011 1.02811 0.92164 1.24984 0.96001 0.95284 0.98307 1.69955 1.31167 1.25177 1.27501 0.86573 0.81938 0.77916 0.81025 1.20335 1.21387 1.20193 0.90806 0.93023 0.93620 0.92284 0.89226 0.94116 0.92694 0.92586 0.93000 0.92200 0.89544 0.92826 0.92811 0.92647 0.90331 0.91449 0.84657 1.00037 0.95347 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 6.86 37.16 0.25 -1.85 16 2 C -0.06 -0.83 0.68 -155.21 -0.11 -0.94 16 3 C -0.16 -2.17 6.33 37.16 0.24 -1.94 16 4 C -0.10 -1.34 4.81 -25.62 -0.12 -1.46 16 5 C -0.12 -1.44 5.32 -27.44 -0.15 -1.58 16 6 C -0.14 -1.67 5.56 -27.34 -0.15 -1.82 16 7 C -0.11 -1.62 5.21 -29.60 -0.15 -1.77 16 8 C -0.13 -2.22 4.72 -29.60 -0.14 -2.36 16 9 C 0.10 1.88 1.89 -68.33 -0.13 1.75 16 10 H 0.03 0.56 6.85 -51.93 -0.36 0.20 16 11 N -0.69 -14.95 5.81 -108.64 -0.63 -15.58 16 12 C 0.19 5.18 5.24 -4.97 -0.03 5.16 16 13 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H 0.07 1.15 6.97 -51.93 -0.36 0.79 16 22 H 0.05 0.77 7.48 -51.93 -0.39 0.39 16 23 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 24 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 25 H 0.09 1.16 2.67 -51.93 -0.14 1.02 16 26 H 0.04 0.47 7.76 -51.93 -0.40 0.07 16 27 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 28 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.82 6.63 -51.93 -0.34 0.47 16 31 H 0.09 1.01 4.25 -51.93 -0.22 0.79 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.84 7.47 -51.93 -0.39 0.46 16 35 H 0.08 1.25 4.83 -51.93 -0.25 1.00 16 36 H 0.07 1.35 6.45 -51.93 -0.33 1.02 16 37 H 0.33 6.95 5.48 -39.29 -0.22 6.73 16 38 H -0.02 -0.52 8.10 -51.93 -0.42 -0.94 16 39 H 0.03 0.82 6.62 -51.93 -0.34 0.47 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -29.64 285.23 -8.15 -37.79 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.63 Total: 3.46 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.90 Total: -20.42 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.11 Total: -42.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.64 -8.15 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719187518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.792 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds