Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 108.85046 * 2 1 4 4 C 1.54063 * 108.87915 * 241.53685 * 2 1 3 5 5 C 1.54066 * 112.81859 * 197.50684 * 4 2 1 6 6 C 1.50474 * 112.49908 * 318.28139 * 5 4 2 7 7 C 1.54239 * 108.52902 * 94.14382 * 6 5 4 8 8 C 1.45542 * 112.40185 * 280.02236 * 7 6 5 9 9 C 1.50479 * 108.87649 * 118.55687 * 2 1 3 10 10 H 1.09000 * 109.62581 * 95.03149 * 9 2 1 11 11 N 1.46893 * 109.62831 * 334.64300 * 9 2 1 12 12 C 1.46904 * 110.99624 * 166.51722 * 11 9 2 13 13 C 1.50706 * 109.47096 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00060 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00233 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46931 * 60.00143 * 17 15 13 19 19 H 1.48498 * 109.47204 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47070 * 300.00264 * 17 15 13 21 21 H 1.09002 * 109.47107 * 307.54319 * 1 2 3 22 22 H 1.09000 * 109.47018 * 187.54900 * 1 2 3 23 23 H 1.08998 * 109.47299 * 67.54977 * 1 2 3 24 24 H 1.08999 * 109.47296 * 46.11323 * 3 2 1 25 25 H 1.08996 * 109.47079 * 166.11085 * 3 2 1 26 26 H 1.09000 * 109.47021 * 286.11200 * 3 2 1 27 27 H 1.09006 * 108.81033 * 318.36651 * 4 2 1 28 28 H 1.08993 * 108.81304 * 76.64306 * 4 2 1 29 29 H 1.09000 * 108.88063 * 197.50698 * 5 4 2 30 30 H 1.09001 * 108.80114 * 78.99977 * 5 4 2 31 31 H 1.09003 * 109.62845 * 334.43348 * 6 5 4 32 32 H 1.08996 * 109.79159 * 213.95254 * 6 5 4 33 33 H 1.09003 * 108.89635 * 159.27213 * 7 6 5 34 34 H 1.08996 * 108.89553 * 40.77757 * 7 6 5 35 35 H 1.08993 * 108.89954 * 301.17975 * 8 7 6 36 36 H 1.09006 * 108.89229 * 182.68851 * 8 7 6 37 37 H 1.00902 * 111.00327 * 42.56632 * 11 9 2 38 38 H 1.09001 * 109.46991 * 299.99584 * 12 11 9 39 39 H 1.08997 * 109.47544 * 59.99608 * 12 11 9 40 40 H 0.96998 * 120.00504 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4480 0.0000 4 6 2.0285 -0.6948 -1.2815 5 6 3.5033 -1.1309 -1.1897 6 6 4.3715 -0.0913 -0.5342 7 6 4.4788 -0.4193 0.9691 8 6 3.3098 0.0190 1.7172 9 6 2.0169 -0.6806 1.2506 10 1 2.2205 -1.7306 1.0404 11 7 0.9935 -0.5768 2.2993 12 6 1.2867 -1.4886 3.4131 13 6 0.2174 -1.3548 4.4667 14 1 -0.5980 -0.6614 4.3234 15 6 0.2804 -2.1176 5.6135 16 7 1.2731 -2.9624 5.7877 17 14 -1.0446 -1.9512 6.9198 18 1 -2.3646 -2.2945 6.3325 19 1 -0.7489 -2.8739 8.0451 20 1 -1.0738 -0.5533 7.4198 21 1 -0.3633 0.6262 0.8148 22 1 -0.3633 -1.0188 0.1350 23 1 -0.3634 0.3924 -0.9498 24 1 1.4676 2.0220 0.7406 25 1 3.0858 1.4695 0.2467 26 1 1.8719 1.8840 -0.9873 27 1 1.4125 -1.5748 -1.4666 28 1 1.9167 -0.0076 -2.1201 29 1 3.8784 -1.3203 -2.1955 30 1 3.5614 -2.0537 -0.6124 31 1 3.9234 0.8940 -0.6629 32 1 5.3645 -0.1032 -0.9834 33 1 5.3627 0.0724 1.3754 34 1 4.5905 -1.4969 1.0881 35 1 3.1937 1.0954 1.5920 36 1 3.4661 -0.1968 2.7742 37 1 0.0726 -0.7485 1.9242 38 1 1.3084 -2.5149 3.0464 39 1 2.2555 -1.2363 3.8440 40 1 1.3172 -3.4993 6.5944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719187518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -10.101053 kcal Electronic energy + Delta-G solvation = -16835.156033 eV Core-core repulsion = 14456.293385 eV Total energy + Delta-G solvation = -2378.862648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44614 -36.57818 -35.13015 -34.27044 -32.24919 -29.05533 -28.29130 -27.62179 -25.16957 -23.44303 -23.05114 -20.93543 -19.19952 -18.27109 -17.30736 -16.82711 -16.28591 -15.63451 -15.37431 -15.04609 -14.48408 -14.38025 -14.08060 -13.82248 -13.60987 -13.27139 -12.99086 -12.85713 -12.69324 -12.58978 -12.50915 -12.07302 -11.95596 -11.77520 -11.41271 -11.29211 -11.17294 -10.99253 -10.92675 -10.62935 -10.41455 -9.02365 -8.23043 -6.34846 1.38901 1.43137 1.51140 2.38862 3.09496 3.52386 3.75866 3.84164 4.07504 4.10316 4.23370 4.30901 4.41508 4.46367 4.59849 4.69268 4.84905 4.90106 4.92227 5.03932 5.05786 5.07459 5.14983 5.17340 5.22236 5.28785 5.30648 5.38451 5.41331 5.47232 5.52097 5.56196 5.60928 5.62956 5.77626 6.05965 6.51527 6.78186 6.93735 7.36419 8.88470 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039698 B = 0.006881 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.152194 B = 4068.314892 C = 4401.155006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.160 4.160 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.125 4.125 9 C 0.102 3.898 10 H 0.004 0.996 11 N -0.685 5.685 12 C 0.212 3.788 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.059 0.941 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.023 0.977 37 H 0.337 0.663 38 H -0.053 1.053 39 H -0.001 1.001 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 7.178 -15.075 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.216 4.216 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.167 4.167 7 C -0.151 4.151 8 C -0.162 4.162 9 C -0.008 4.008 10 H 0.022 0.978 11 N -0.319 5.319 12 C 0.084 3.916 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.192 1.192 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.042 0.958 37 H 0.159 0.841 38 H -0.035 1.035 39 H 0.017 0.983 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.554 7.584 -14.655 16.880 hybrid contribution -0.694 -1.532 0.896 1.906 sum 2.860 6.052 -13.759 15.301 Atomic orbital electron populations 1.21933 0.95031 1.00852 1.02370 1.20291 0.95478 0.96740 0.93142 1.22683 1.02964 0.94113 1.01795 1.22002 0.95681 1.00041 0.96280 1.21320 0.94920 0.98323 1.00969 1.21759 1.00401 1.01247 0.93285 1.20455 0.97507 1.00217 0.96955 1.20761 0.94269 1.02759 0.98403 1.21181 0.92607 0.95783 0.91274 0.97798 1.60773 1.05286 1.56122 1.09690 1.19154 0.95746 0.87408 0.89281 1.21550 1.09732 1.22474 1.03776 0.91782 1.25996 0.98496 0.94552 1.00783 1.70101 1.33168 1.25909 1.28360 0.85365 0.78830 0.78290 0.77682 1.19038 1.20718 1.19211 0.92249 0.94321 0.90753 0.93638 0.88839 0.91244 0.93203 0.89838 0.90535 0.94536 0.88340 0.90587 0.91441 0.94539 0.88740 0.95794 0.84119 1.03511 0.98251 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 6.86 71.98 0.49 -3.50 16 2 C -0.06 -1.56 0.68 -52.64 -0.04 -1.60 16 3 C -0.16 -3.82 6.33 71.98 0.46 -3.36 16 4 C -0.10 -2.35 4.81 31.31 0.15 -2.20 16 5 C -0.12 -2.66 5.32 30.14 0.16 -2.50 16 6 C -0.13 -2.80 5.56 30.20 0.17 -2.63 16 7 C -0.11 -3.23 5.21 28.74 0.15 -3.08 16 8 C -0.12 -4.36 4.72 28.74 0.14 -4.22 16 9 C 0.10 3.79 1.89 44.52 0.08 3.87 16 10 H 0.00 0.17 6.85 -2.39 -0.02 0.16 16 11 N -0.68 -30.98 5.81 -497.63 -2.89 -33.86 16 12 C 0.21 12.03 5.24 85.56 0.45 12.47 16 13 C -0.54 -31.91 9.32 25.60 0.24 -31.67 16 14 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 16 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 17 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H 0.06 1.81 6.97 -2.39 -0.02 1.79 16 22 H 0.04 1.15 7.48 -2.39 -0.02 1.13 16 23 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 24 H 0.04 1.22 7.95 -2.39 -0.02 1.20 16 25 H 0.09 2.16 2.67 -2.39 -0.01 2.15 16 26 H 0.07 1.30 7.76 -2.39 -0.02 1.28 16 27 H 0.05 1.20 7.98 -2.38 -0.02 1.18 16 28 H 0.08 1.52 7.72 -2.39 -0.02 1.50 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.99 6.63 -2.39 -0.02 0.97 16 31 H 0.10 1.92 4.25 -2.39 -0.01 1.91 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.16 7.47 -2.39 -0.02 1.14 16 35 H 0.09 2.97 4.83 -2.39 -0.01 2.96 16 36 H 0.02 1.02 6.45 -2.38 -0.02 1.00 16 37 H 0.34 14.58 5.48 -89.69 -0.49 14.09 16 38 H -0.05 -3.27 8.10 -2.39 -0.02 -3.29 16 39 H 0.00 -0.03 6.62 -2.39 -0.02 -0.05 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -66.37 285.23 2.85 -63.52 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.52 Total: 19.04 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 2.91 Total: -37.97 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -2.60 Total: -92.05 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.37 2.85 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719187518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.415 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds