Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00292 * 2 1 4 4 H 1.09006 * 112.84834 * 341.19252 * 3 2 1 5 5 C 1.53953 * 113.67238 * 112.43760 * 3 2 1 6 6 C 1.53774 * 87.02304 * 139.93651 * 5 3 2 7 7 H 1.08999 * 113.61928 * 89.22757 * 6 5 3 8 8 C 1.52998 * 113.61366 * 220.05019 * 6 5 3 9 9 N 1.46500 * 109.47147 * 274.13376 * 8 6 5 10 10 C 1.36937 * 120.00040 * 90.00030 * 9 8 6 11 11 H 1.08000 * 119.99730 * 215.50115 * 10 9 8 12 12 C 1.38811 * 120.00020 * 35.22393 * 10 9 8 13 13 N 1.31620 * 119.99589 * 23.70249 * 12 10 9 14 14 Si 1.86797 * 120.00086 * 203.69996 * 12 10 9 15 15 H 1.48501 * 109.47224 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46996 * 120.00156 * 14 12 10 17 17 H 1.48500 * 109.47345 * 240.00435 * 14 12 10 18 18 C 1.46505 * 119.99861 * 269.99782 * 9 8 6 19 19 C 1.52999 * 117.49432 * 191.35344 * 18 9 8 20 20 C 1.52998 * 117.49676 * 122.69282 * 18 9 8 21 21 C 1.53782 * 87.17368 * 334.63655 * 6 5 3 22 22 H 1.08998 * 109.46641 * 60.01118 * 1 2 3 23 23 H 1.09006 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47487 * 300.00450 * 1 2 3 25 25 H 1.08998 * 113.61359 * 25.40905 * 5 3 2 26 26 H 1.09008 * 113.66254 * 254.46534 * 5 3 2 27 27 H 1.09001 * 109.47493 * 154.12962 * 8 6 5 28 28 H 1.09001 * 109.47242 * 34.13692 * 8 6 5 29 29 H 0.97012 * 119.99479 * 184.49589 * 13 12 10 30 30 H 1.08998 * 115.54854 * 337.02245 * 18 9 8 31 31 H 1.08990 * 117.50349 * 359.97438 * 19 18 9 32 32 H 1.08997 * 117.49459 * 145.02801 * 19 18 9 33 33 H 1.08996 * 117.49748 * 214.97819 * 20 18 9 34 34 H 1.09006 * 117.49800 * 359.97438 * 20 18 9 35 35 H 1.09000 * 113.61557 * 139.93414 * 21 6 5 36 36 H 1.09001 * 113.61783 * 270.76099 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 -0.3239 5 6 2.7533 1.6511 1.3032 6 6 3.8227 2.3181 0.4222 7 1 3.6236 3.3694 0.2142 8 6 5.2542 2.0680 0.9007 9 7 5.6132 3.0669 1.9105 10 6 5.3710 2.8189 3.2353 11 1 5.0767 3.6254 3.8905 12 6 5.4981 1.5300 3.7347 13 7 6.2676 0.6583 3.1180 14 14 4.5773 1.0329 5.2820 15 1 3.7862 2.1869 5.7796 16 1 3.6639 -0.0965 4.9731 17 1 5.5493 0.6128 6.3231 18 6 6.2313 4.3311 1.5029 19 6 6.8237 5.2146 2.6026 20 6 5.5237 5.6260 1.9069 21 6 3.3757 1.3718 -0.7045 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.1161 0.7771 1.8441 26 1 2.2144 2.3515 1.9415 27 1 5.9384 2.1436 0.0555 28 1 5.3230 1.0708 1.3355 29 1 6.3059 -0.2599 3.4286 30 1 6.7418 4.3158 0.5399 31 1 6.7531 4.8556 3.6293 32 1 7.7236 5.7810 2.3630 33 1 5.5689 6.4628 1.2100 34 1 4.5980 5.5373 2.4756 35 1 3.3385 1.8469 -1.6848 36 1 3.9100 0.4217 -0.7145 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721135859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 20.583753 kcal Electronic energy + Delta-G solvation = -16205.382161 eV Core-core repulsion = 13692.017011 eV Total energy + Delta-G solvation = -2513.365150 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.96238 -36.97282 -35.62492 -33.16427 -30.49475 -27.18821 -26.06386 -24.97996 -23.97117 -21.42909 -21.32974 -19.78025 -18.81111 -16.64629 -15.94996 -15.41238 -15.05247 -14.77534 -14.41356 -14.03054 -13.71739 -12.82496 -12.39298 -12.16424 -11.77343 -11.59256 -11.22001 -11.10295 -10.89067 -10.77415 -10.58872 -10.55079 -10.14021 -10.07272 -9.78019 -9.67271 -9.26342 -9.19478 -8.99453 -8.33313 -6.52696 -5.73620 -3.33352 3.36826 3.46678 3.48284 4.14524 4.48484 4.97305 5.10153 5.19027 5.24683 5.37673 5.42376 5.51258 5.57313 5.70563 5.74476 5.91930 5.95007 6.15456 6.25703 6.29858 6.46872 6.49931 6.60139 6.62386 6.79034 6.81981 6.98317 7.03236 7.13404 7.19396 7.61533 7.76735 7.83462 8.51025 9.20021 9.83848 10.39485 11.21130 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.010607 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.093858 B = 2639.132584 C = 3503.922967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.052 3.948 4 H 0.076 0.924 5 C -0.127 4.127 6 C -0.117 4.117 7 H 0.075 0.925 8 C 0.158 3.842 9 N -0.549 5.549 10 C -0.251 4.251 11 H 0.061 0.939 12 C 0.016 3.984 13 N -0.881 5.881 14 Si 0.885 3.115 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.290 1.290 18 C 0.127 3.873 19 C -0.197 4.197 20 C -0.229 4.229 21 C -0.131 4.131 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.100 0.900 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 2.269 -6.356 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.094 0.906 5 C -0.165 4.165 6 C -0.137 4.137 7 H 0.094 0.906 8 C 0.032 3.968 9 N -0.265 5.265 10 C -0.381 4.381 11 H 0.079 0.921 12 C -0.185 4.185 13 N -0.523 5.523 14 Si 0.714 3.286 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.217 1.217 18 C 0.018 3.982 19 C -0.236 4.236 20 C -0.271 4.271 21 C -0.169 4.169 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.940 1.892 -6.276 9.546 hybrid contribution -0.817 0.046 0.870 1.194 sum -7.757 1.937 -5.406 9.651 Atomic orbital electron populations 1.22696 0.82331 1.02039 0.99437 1.87963 1.18686 1.28508 1.94708 1.24024 0.93565 0.83941 0.99006 0.90564 1.23336 0.96835 1.00814 0.95534 1.22927 0.99263 0.97142 0.94402 0.90631 1.20951 0.89096 0.96895 0.89838 1.43432 1.66319 1.13604 1.03138 1.18933 1.39704 0.94057 0.85374 0.92128 1.24999 0.97572 0.98454 0.97442 1.70103 1.35443 1.04083 1.42701 0.86510 0.79947 0.78582 0.83524 1.20114 1.21202 1.21711 1.21128 0.97128 0.84619 0.95354 1.23060 0.95167 1.05111 1.00244 1.23386 0.96573 1.01717 1.05375 1.23239 0.95051 1.01016 0.97642 0.94623 0.90295 0.94358 0.89346 0.92347 0.95609 0.88205 0.93652 0.89641 0.88394 0.90895 0.91088 0.89839 0.92228 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 101.05 1.10 1.50 16 2 O -0.38 -6.51 10.72 -35.23 -0.38 -6.89 16 3 C 0.05 0.87 4.31 -25.83 -0.11 0.76 16 4 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 5 C -0.13 -2.52 7.48 -25.83 -0.19 -2.71 16 6 C -0.12 -2.27 3.96 -89.81 -0.36 -2.62 16 7 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 8 C 0.16 3.62 5.16 -4.04 -0.02 3.60 16 9 N -0.55 -13.40 2.79 -165.66 -0.46 -13.86 16 10 C -0.25 -6.69 8.19 -15.06 -0.12 -6.81 16 11 H 0.06 1.65 7.17 -52.49 -0.38 1.27 16 12 C 0.02 0.42 4.92 -17.43 -0.09 0.34 16 13 N -0.88 -25.00 11.45 55.49 0.64 -24.36 16 14 Si 0.89 21.51 29.62 -169.99 -5.03 16.47 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 C 0.13 2.74 6.60 -67.93 -0.45 2.29 16 19 C -0.20 -3.99 9.79 -26.69 -0.26 -4.25 16 20 C -0.23 -4.42 10.17 -26.69 -0.27 -4.69 16 21 C -0.13 -2.22 7.48 -25.92 -0.19 -2.42 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 2.00 7.92 -51.93 -0.41 1.59 16 26 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 27 H 0.03 0.56 8.05 -51.93 -0.42 0.15 16 28 H 0.10 2.60 5.17 -51.93 -0.27 2.33 16 29 H 0.25 6.97 8.32 -40.81 -0.34 6.63 16 30 H 0.09 1.71 8.11 -51.93 -0.42 1.29 16 31 H 0.10 2.19 6.79 -51.93 -0.35 1.84 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -28.41 295.56 -7.77 -36.18 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.02 Total: 3.03 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.97 Total: -15.02 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.17 Total: -38.22 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.38 Total: -6.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.41 -7.77 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721135859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.762 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds