Wall clock time and date at job start Mon Mar 30 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47764 * 2 1 4 4 C 1.53010 * 110.00998 * 52.54811 * 3 2 1 5 5 C 1.52994 * 109.46741 * 54.10625 * 4 3 2 6 6 C 1.54309 * 109.89429 * 173.66692 * 3 2 1 7 7 C 1.55138 * 103.02112 * 141.68758 * 6 3 2 8 8 C 1.54903 * 101.65612 * 324.34763 * 7 6 3 9 9 N 1.47446 * 109.88810 * 291.43741 * 3 2 1 10 10 C 1.46903 * 110.99745 * 3.84678 * 9 3 2 11 11 H 1.09000 * 109.47336 * 337.95835 * 10 9 3 12 12 C 1.52999 * 109.47453 * 217.95235 * 10 9 3 13 13 C 1.50711 * 109.46929 * 97.95542 * 10 9 3 14 14 H 1.07997 * 119.99835 * 4.34816 * 13 10 9 15 15 C 1.37876 * 119.99596 * 184.34452 * 13 10 9 16 16 N 1.31509 * 120.00537 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99516 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47340 * 90.00257 * 17 15 13 19 19 H 1.48505 * 109.47148 * 210.00217 * 17 15 13 20 20 H 1.48496 * 109.47221 * 329.99823 * 17 15 13 21 21 H 1.08997 * 109.47505 * 216.57743 * 1 2 3 22 22 H 1.09006 * 109.46810 * 336.57882 * 1 2 3 23 23 H 1.09003 * 109.47110 * 96.57299 * 1 2 3 24 24 H 1.09000 * 109.47050 * 239.99170 * 2 1 3 25 25 H 1.09009 * 109.46867 * 120.00001 * 2 1 3 26 26 H 1.09001 * 109.47018 * 174.10827 * 4 3 2 27 27 H 1.09000 * 109.46805 * 294.10878 * 4 3 2 28 28 H 1.09000 * 109.47556 * 66.41762 * 5 4 3 29 29 H 1.09007 * 109.46848 * 186.41626 * 5 4 3 30 30 H 1.09002 * 109.47293 * 306.40960 * 5 4 3 31 31 H 1.08999 * 110.70809 * 23.30568 * 6 3 2 32 32 H 1.09005 * 110.70710 * 260.07189 * 6 3 2 33 33 H 1.09003 * 110.99208 * 82.44302 * 7 6 3 34 34 H 1.09001 * 110.99423 * 206.25416 * 7 6 3 35 35 H 1.08996 * 110.37812 * 155.89609 * 8 7 6 36 36 H 1.08998 * 110.37048 * 278.24622 * 8 7 6 37 37 H 1.08995 * 109.46885 * 79.74077 * 12 10 9 38 38 H 1.09000 * 109.47785 * 199.74366 * 12 10 9 39 39 H 1.09003 * 109.46833 * 319.74873 * 12 10 9 40 40 H 0.96998 * 120.00544 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3905 2.2275 1.1414 5 6 1.6177 1.4893 2.4620 6 6 3.5748 1.4566 0.1601 7 6 4.0136 2.6104 -0.7795 8 6 2.9995 2.4703 -1.9420 9 7 1.7296 2.0842 -1.2906 10 6 0.9486 1.1855 -2.1510 11 1 1.1024 0.1541 -1.8337 12 6 1.4040 1.3459 -3.6028 13 6 -0.5142 1.5317 -2.0423 14 1 -0.8256 2.3822 -1.4541 15 6 -1.4548 0.7625 -2.6940 16 7 -1.0757 -0.2734 -3.4099 17 14 -3.2679 1.1911 -2.5587 18 1 -3.6384 2.1261 -3.6512 19 1 -4.0792 -0.0477 -2.6709 20 1 -3.5276 1.8355 -1.2463 21 1 -0.3634 -0.8252 0.6124 22 1 -0.3633 0.9431 0.4085 23 1 -0.3633 -0.1176 -1.0209 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.8360 3.2207 1.1988 27 1 0.3203 2.3195 0.9560 28 1 2.6804 1.4969 2.7044 29 1 1.0603 1.9859 3.2564 30 1 1.2741 0.4593 2.3664 31 1 4.0051 0.5096 -0.1657 32 1 3.8528 1.6727 1.1917 33 1 3.9106 3.5767 -0.2857 34 1 5.0343 2.4606 -1.1316 35 1 2.8851 3.4210 -2.4626 36 1 3.3218 1.6933 -2.6352 37 1 2.3231 0.7814 -3.7597 38 1 0.6286 0.9705 -4.2706 39 1 1.5850 2.4002 -3.8125 40 1 -1.7375 -0.8148 -3.8680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721219928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:41 Heat of formation + Delta-G solvation = 18.136267 kcal Electronic energy + Delta-G solvation = -17624.223226 eV Core-core repulsion = 15246.585040 eV Total energy + Delta-G solvation = -2377.638186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30484 -36.13745 -35.35802 -33.13130 -31.37127 -29.27991 -28.10660 -27.35830 -24.53678 -23.76630 -22.57778 -20.73779 -18.95865 -18.33269 -17.24010 -16.92531 -16.30077 -15.51092 -15.06702 -14.64005 -14.30815 -13.80509 -13.68275 -13.51671 -13.36749 -13.02600 -12.87693 -12.62666 -12.47811 -12.42002 -12.15546 -11.99569 -11.80233 -11.69732 -11.50420 -11.30267 -11.07411 -10.92254 -10.89329 -10.77859 -10.12530 -8.61988 -7.96323 -5.96765 1.41802 1.45036 1.52950 2.49154 3.29205 3.43015 3.89019 3.98020 4.13152 4.34130 4.38715 4.57104 4.64279 4.69834 4.75523 4.78304 4.89001 4.92137 4.99487 5.02261 5.05259 5.15118 5.16279 5.20260 5.25777 5.32784 5.38426 5.47753 5.53614 5.60631 5.64852 5.76725 5.88168 5.90881 6.27333 6.46291 6.74823 6.85497 7.08771 7.60619 9.06094 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.011366 C = 0.009481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.968712 B = 2462.851989 C = 2952.690434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 C 0.104 3.896 4 C -0.095 4.095 5 C -0.146 4.146 6 C -0.130 4.130 7 C -0.120 4.120 8 C 0.034 3.966 9 N -0.530 5.530 10 C 0.177 3.823 11 H 0.040 0.960 12 C -0.133 4.133 13 C -0.464 4.464 14 H 0.044 0.956 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.933 3.067 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.272 1.272 21 H 0.018 0.982 22 H 0.054 0.946 23 H 0.100 0.900 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.020 0.980 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 2.694 7.978 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.152 4.152 3 C 0.015 3.985 4 C -0.133 4.133 5 C -0.204 4.204 6 C -0.168 4.168 7 C -0.158 4.158 8 C -0.094 4.094 9 N -0.255 5.255 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.191 4.191 13 C -0.504 4.504 14 H 0.062 0.938 15 C -0.184 4.184 16 N -0.563 5.563 17 Si 0.761 3.239 18 H -0.210 1.210 19 H -0.214 1.214 20 H -0.197 1.197 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.118 0.882 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.062 2.998 7.947 11.711 hybrid contribution -0.920 -0.677 -0.656 1.317 sum 7.142 2.321 7.291 10.467 Atomic orbital electron populations 1.22731 0.95578 0.99357 1.05285 1.21827 0.96950 0.96918 0.99467 1.21786 0.93993 0.91857 0.90909 1.21420 0.99969 0.98331 0.93589 1.21855 1.02027 1.00418 0.96101 1.22900 0.94222 0.98579 1.01093 1.22670 0.98467 0.98943 0.95670 1.23127 0.89775 0.99512 0.96952 1.63679 1.16394 1.41693 1.03706 1.20064 0.91862 0.92919 0.88084 0.94327 1.21964 0.98099 0.98058 1.01027 1.21152 0.91632 1.10497 1.27113 0.93753 1.25357 1.01266 0.95560 0.96226 1.70021 1.34161 1.18359 1.33710 0.85922 0.82429 0.77291 0.78280 1.20950 1.21361 1.19699 0.96304 0.92737 0.88198 0.94198 0.91501 0.92362 0.93602 0.91447 0.92318 0.93004 0.92090 0.89132 0.90619 0.89685 0.92015 0.94496 0.96083 0.93161 0.94759 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.59 7.52 71.98 0.54 -7.04 16 2 C -0.11 -4.36 3.72 30.59 0.11 -4.25 16 3 C 0.10 3.69 0.65 3.87 0.00 3.69 16 4 C -0.09 -3.13 4.75 30.60 0.15 -2.98 16 5 C -0.15 -3.82 9.32 71.98 0.67 -3.15 16 6 C -0.13 -3.67 5.84 31.77 0.19 -3.49 16 7 C -0.12 -3.28 7.08 31.98 0.23 -3.05 16 8 C 0.03 1.22 5.25 86.77 0.46 1.68 16 9 N -0.53 -22.12 4.65 -815.97 -3.80 -25.91 16 10 C 0.18 8.63 1.67 44.17 0.07 8.70 16 11 H 0.04 2.04 3.19 -2.39 -0.01 2.03 16 12 C -0.13 -6.43 7.88 71.98 0.57 -5.87 16 13 C -0.46 -24.77 5.64 25.60 0.14 -24.63 16 14 H 0.04 2.47 7.81 -2.91 -0.02 2.44 16 15 C 0.01 0.69 3.99 84.66 0.34 1.03 16 16 N -0.92 -51.84 11.54 21.45 0.25 -51.59 16 17 Si 0.93 43.97 29.54 68.60 2.03 45.99 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.05 2.42 4.80 -2.38 -0.01 2.41 16 23 H 0.10 5.13 3.11 -2.39 -0.01 5.12 16 24 H 0.04 1.71 6.19 -2.39 -0.01 1.69 16 25 H 0.07 2.21 6.71 -2.38 -0.02 2.19 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.78 6.07 -2.39 -0.01 1.77 16 28 H 0.07 1.48 6.69 -2.39 -0.02 1.46 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.05 1.43 5.91 -2.39 -0.01 1.41 16 31 H 0.06 1.72 7.85 -2.39 -0.02 1.70 16 32 H 0.09 2.14 6.31 -2.38 -0.02 2.12 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.20 7.84 -2.39 -0.02 2.19 16 36 H 0.04 1.38 5.73 -2.39 -0.01 1.36 16 37 H 0.02 0.92 6.92 -2.39 -0.02 0.90 16 38 H 0.05 2.71 6.22 -2.39 -0.01 2.69 16 39 H 0.03 1.56 6.96 -2.39 -0.02 1.54 16 40 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -56.98 277.71 2.96 -54.02 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.01 Total: 16.85 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.47 Total: -39.36 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.55 Total: -77.50 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -56.98 2.96 -54.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721219928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.160 kcal (2) G-P(sol) polarization free energy of solvation -56.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds