Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47007 * 2 1 4 4 C 1.50696 * 109.46977 * 239.99836 * 2 1 3 5 5 H 1.08000 * 120.00031 * 239.99445 * 4 2 1 6 6 C 1.37877 * 120.00183 * 60.00013 * 4 2 1 7 7 N 1.31521 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00540 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46813 * 59.99916 * 8 6 4 10 10 H 1.48500 * 109.47570 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47194 * 300.00318 * 8 6 4 12 12 N 1.46499 * 109.46994 * 119.99769 * 2 1 3 13 13 N 1.40101 * 120.00179 * 269.99911 * 12 2 1 14 14 C 1.28005 * 119.99886 * 180.02562 * 13 12 2 15 15 C 1.51948 * 127.13267 * 359.97438 * 14 13 12 16 16 N 1.48552 * 104.88763 * 155.96544 * 15 14 13 17 17 C 1.46901 * 110.99842 * 158.48938 * 16 15 14 18 18 C 1.48651 * 103.77677 * 39.18998 * 16 15 14 19 19 C 1.51843 * 127.13151 * 180.02562 * 14 13 12 20 20 H 1.09008 * 110.27300 * 299.37305 * 19 14 13 21 21 C 1.52998 * 110.27226 * 61.35817 * 19 14 13 22 22 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47138 * 300.00035 * 1 2 3 24 24 H 1.08995 * 109.46971 * 60.00053 * 1 2 3 25 25 H 0.96998 * 120.00320 * 179.97438 * 7 6 4 26 26 H 0.97008 * 119.99789 * 90.00478 * 12 2 1 27 27 H 1.08994 * 110.35996 * 37.10544 * 15 14 13 28 28 H 1.09001 * 110.44310 * 274.85759 * 15 14 13 29 29 H 1.09002 * 109.47401 * 59.86994 * 17 16 15 30 30 H 1.09001 * 109.46874 * 299.87007 * 17 16 15 31 31 H 1.09004 * 109.46970 * 179.87140 * 17 16 15 32 32 H 1.09002 * 110.49439 * 80.05334 * 18 16 15 33 33 H 1.09001 * 110.49290 * 202.72064 * 18 16 15 34 34 H 1.09002 * 109.46986 * 58.55033 * 21 19 14 35 35 H 1.09007 * 109.46632 * 178.54849 * 21 19 14 36 36 H 1.08992 * 109.47157 * 298.54647 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8278 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0300 2.3748 14 6 2.6790 -0.5734 3.4198 15 6 2.9847 -2.0549 3.5630 16 7 3.9618 -2.1368 4.6791 17 6 3.9721 -3.4808 5.2720 18 6 3.4707 -1.1280 5.6542 19 6 2.9841 0.0428 4.7736 20 1 3.7664 0.7959 4.6782 21 6 1.7200 0.6652 5.3698 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7095 1.1618 -3.4844 26 1 2.1801 -1.6468 1.1722 27 1 3.4253 -2.4417 2.6442 28 1 2.0790 -2.6083 3.8107 29 1 4.2458 -4.2116 4.5110 30 1 2.9807 -3.7143 5.6601 31 1 4.6975 -3.5136 6.0850 32 1 2.6455 -1.5334 6.2398 33 1 4.2804 -0.8033 6.3077 34 1 0.9501 -0.1001 5.4687 35 1 1.9478 1.0805 6.3516 36 1 1.3616 1.4586 4.7140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 40.372971 kcal Electronic energy + Delta-G solvation = -15611.046666 eV Core-core repulsion = 13130.832392 eV Total energy + Delta-G solvation = -2480.214274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10860 -36.01128 -33.99954 -32.79227 -30.90042 -28.17761 -27.01786 -26.19337 -25.15511 -23.08154 -21.27689 -20.08730 -18.68877 -16.92488 -15.86866 -15.69552 -14.89324 -14.63089 -14.18521 -13.69308 -13.14996 -13.01140 -12.79421 -12.43336 -12.32922 -12.10471 -11.63401 -11.46790 -11.26738 -11.07648 -10.92195 -10.84209 -10.70716 -10.28957 -10.18510 -10.03781 -9.26470 -8.93120 -8.54826 -8.47222 -6.84156 -6.10098 -4.17994 2.94275 3.27788 3.32236 3.34078 3.78939 4.11892 4.38858 4.75696 5.00504 5.09981 5.22061 5.31771 5.36787 5.44843 5.60965 5.65451 5.69563 5.75036 5.79038 5.92626 6.20084 6.35542 6.39589 6.67094 6.83493 6.98799 7.03982 7.14807 7.22051 7.62468 7.84136 7.91479 8.22571 8.38309 8.90702 9.46542 9.49517 10.95797 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.005956 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.397555 B = 4699.768109 C = 5222.060825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.300 3.700 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.635 5.635 13 N -0.190 5.190 14 C -0.004 4.004 15 C 0.049 3.951 16 N -0.508 5.508 17 C 0.013 3.987 18 C 0.037 3.963 19 C -0.025 4.025 20 H 0.087 0.913 21 C -0.137 4.137 22 H 0.024 0.976 23 H 0.011 0.989 24 H 0.089 0.911 25 H 0.264 0.736 26 H 0.367 0.633 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -4.685 14.499 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.198 3.802 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.371 5.371 13 N 0.001 4.999 14 C -0.200 4.200 15 C -0.082 4.082 16 N -0.231 5.231 17 C -0.136 4.136 18 C -0.091 4.091 19 C -0.046 4.046 20 H 0.105 0.895 21 C -0.196 4.196 22 H 0.043 0.957 23 H 0.030 0.970 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.203 0.797 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.778 -3.450 13.626 14.328 hybrid contribution -0.274 -1.973 -0.461 2.044 sum 2.504 -5.422 13.165 14.457 Atomic orbital electron populations 1.22202 0.99251 0.99028 1.00387 1.18461 0.89945 0.93459 0.78380 0.94246 1.21212 1.32099 1.13216 0.90298 0.92356 1.24855 0.94866 0.95014 0.98901 1.69885 1.36124 1.22530 1.23933 0.86497 0.79206 0.79574 0.81756 1.20220 1.21090 1.20183 1.48787 1.74197 1.07620 1.06542 1.73242 1.06645 1.26721 0.93298 1.24256 1.07741 0.92924 0.95031 1.22284 0.94079 0.96152 0.95646 1.65465 1.45140 1.04953 1.07549 1.22535 1.00192 0.90925 0.99955 1.23267 0.98631 0.92556 0.94630 1.20488 0.98007 0.96536 0.89560 0.89526 1.21762 0.96624 1.00977 1.00222 0.95679 0.96964 0.89282 0.92567 0.79694 0.90157 0.93204 0.91317 0.95429 0.91248 0.93441 0.89834 0.93034 0.92689 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 37.16 0.35 -3.41 16 2 C 0.30 7.85 3.23 -69.08 -0.22 7.63 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.52 8.74 -34.44 -0.30 -14.82 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.63 -14.57 6.07 -5.88 -0.04 -14.60 16 13 N -0.19 -4.04 11.50 36.18 0.42 -3.62 16 14 C 0.00 -0.07 6.95 -77.73 -0.54 -0.61 16 15 C 0.05 0.76 5.64 -3.44 -0.02 0.74 16 16 N -0.51 -6.84 5.69 -239.72 -1.37 -8.21 16 17 C 0.01 0.14 9.53 60.07 0.57 0.71 16 18 C 0.04 0.44 6.09 -2.14 -0.01 0.43 16 19 C -0.02 -0.34 3.58 -90.49 -0.32 -0.67 16 20 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 21 C -0.14 -1.69 9.13 37.16 0.34 -1.35 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.37 7.93 7.23 -182.59 -1.32 6.61 16 27 H 0.08 1.33 7.39 -51.93 -0.38 0.94 16 28 H 0.05 0.74 7.96 -51.93 -0.41 0.33 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.27 7.95 -51.93 -0.41 -0.14 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.51 7.59 -51.93 -0.39 0.11 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -28.89 294.61 -8.21 -37.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.01 Total: 2.90 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.26 Total: -9.63 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.36 Total: -50.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.89 -8.21 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.472 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds