Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47007 * 2 1 4 4 C 1.50696 * 109.46977 * 239.99836 * 2 1 3 5 5 H 1.08000 * 120.00031 * 239.99445 * 4 2 1 6 6 C 1.37877 * 120.00183 * 60.00013 * 4 2 1 7 7 N 1.31521 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00540 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46813 * 59.99916 * 8 6 4 10 10 H 1.48500 * 109.47570 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47194 * 300.00318 * 8 6 4 12 12 N 1.46499 * 109.46994 * 119.99769 * 2 1 3 13 13 N 1.40101 * 120.00179 * 269.99911 * 12 2 1 14 14 C 1.28005 * 119.99886 * 180.02562 * 13 12 2 15 15 C 1.51948 * 127.13267 * 359.97438 * 14 13 12 16 16 N 1.48552 * 104.88763 * 155.96544 * 15 14 13 17 17 C 1.46901 * 110.99842 * 158.48938 * 16 15 14 18 18 C 1.48651 * 103.77677 * 39.18998 * 16 15 14 19 19 C 1.51843 * 127.13151 * 180.02562 * 14 13 12 20 20 H 1.09008 * 110.27300 * 299.37305 * 19 14 13 21 21 C 1.52998 * 110.27226 * 61.35817 * 19 14 13 22 22 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47138 * 300.00035 * 1 2 3 24 24 H 1.08995 * 109.46971 * 60.00053 * 1 2 3 25 25 H 0.96998 * 120.00320 * 179.97438 * 7 6 4 26 26 H 0.97008 * 119.99789 * 90.00478 * 12 2 1 27 27 H 1.08994 * 110.35996 * 37.10544 * 15 14 13 28 28 H 1.09001 * 110.44310 * 274.85759 * 15 14 13 29 29 H 1.09002 * 109.47401 * 59.86994 * 17 16 15 30 30 H 1.09001 * 109.46874 * 299.87007 * 17 16 15 31 31 H 1.09004 * 109.46970 * 179.87140 * 17 16 15 32 32 H 1.09002 * 110.49439 * 80.05334 * 18 16 15 33 33 H 1.09001 * 110.49290 * 202.72064 * 18 16 15 34 34 H 1.09002 * 109.46986 * 58.55033 * 21 19 14 35 35 H 1.09007 * 109.46632 * 178.54849 * 21 19 14 36 36 H 1.08992 * 109.47157 * 298.54647 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8278 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0300 2.3748 14 6 2.6790 -0.5734 3.4198 15 6 2.9847 -2.0549 3.5630 16 7 3.9618 -2.1368 4.6791 17 6 3.9721 -3.4808 5.2720 18 6 3.4707 -1.1280 5.6542 19 6 2.9841 0.0428 4.7736 20 1 3.7664 0.7959 4.6782 21 6 1.7200 0.6652 5.3698 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7095 1.1618 -3.4844 26 1 2.1801 -1.6468 1.1722 27 1 3.4253 -2.4417 2.6442 28 1 2.0790 -2.6083 3.8107 29 1 4.2458 -4.2116 4.5110 30 1 2.9807 -3.7143 5.6601 31 1 4.6975 -3.5136 6.0850 32 1 2.6455 -1.5334 6.2398 33 1 4.2804 -0.8033 6.3077 34 1 0.9501 -0.1001 5.4687 35 1 1.9478 1.0805 6.3516 36 1 1.3616 1.4586 4.7140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 20.083822 kcal Electronic energy + Delta-G solvation = -15611.926469 eV Core-core repulsion = 13130.832392 eV Total energy + Delta-G solvation = -2481.094077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29082 -37.67353 -35.70768 -34.12043 -32.70449 -29.56095 -28.32923 -27.48157 -27.19846 -24.21807 -22.71690 -21.68812 -20.19075 -18.58610 -17.50698 -17.02848 -16.66539 -15.73782 -15.47286 -15.20101 -14.62641 -14.34927 -14.16770 -13.89161 -13.72049 -13.29907 -13.09664 -12.99553 -12.81030 -12.62389 -12.44050 -12.29355 -12.20066 -11.98653 -11.85332 -11.68302 -11.11155 -10.60984 -10.55884 -9.54738 -8.56890 -8.17625 -6.34822 1.41814 1.44074 1.49811 1.52344 2.16375 2.46408 3.09112 3.10768 3.64195 3.86416 3.98454 4.21875 4.37941 4.47295 4.51724 4.64148 4.70913 4.76587 4.80026 4.82577 4.97838 5.01582 5.10376 5.14436 5.24979 5.37307 5.39745 5.54387 5.71239 5.82921 5.91922 6.03824 6.23269 6.44304 6.86167 7.36903 7.86802 8.87278 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.005956 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.397555 B = 4699.768109 C = 5222.060825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.309 3.691 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.274 1.274 12 N -0.650 5.650 13 N -0.240 5.240 14 C 0.019 3.981 15 C 0.050 3.950 16 N -0.522 5.522 17 C 0.012 3.988 18 C 0.044 3.956 19 C -0.030 4.030 20 H 0.088 0.912 21 C -0.132 4.132 22 H 0.028 0.972 23 H 0.017 0.983 24 H 0.068 0.932 25 H 0.267 0.733 26 H 0.370 0.630 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 -5.970 16.220 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.205 3.795 3 H 0.015 0.985 4 C -0.588 4.588 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.199 1.199 12 N -0.387 5.387 13 N -0.047 5.047 14 C -0.178 4.178 15 C -0.081 4.081 16 N -0.246 5.246 17 C -0.136 4.136 18 C -0.084 4.084 19 C -0.051 4.051 20 H 0.106 0.894 21 C -0.190 4.190 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.206 0.794 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.535 -4.742 15.373 16.472 hybrid contribution -0.437 -1.578 -0.779 1.813 sum 3.098 -6.320 14.594 16.202 Atomic orbital electron populations 1.22004 0.98859 0.98903 0.99555 1.18062 0.90199 0.91410 0.79787 0.98456 1.21491 1.32524 1.13473 0.91311 0.92392 1.25711 0.94859 0.95651 1.01879 1.70012 1.36833 1.23660 1.24732 0.85432 0.78540 0.78686 0.77867 1.19251 1.20434 1.19912 1.48315 1.76173 1.07421 1.06781 1.73303 1.10286 1.27363 0.93745 1.25182 1.02608 0.94804 0.95167 1.22245 0.95043 0.94494 0.96363 1.65479 1.44387 1.06988 1.07736 1.22614 1.01415 0.89189 1.00407 1.23342 1.00072 0.90947 0.94022 1.20748 0.98935 0.97670 0.87755 0.89364 1.21712 0.95653 1.00306 1.01328 0.95254 0.96409 0.91305 0.92371 0.79354 0.91649 0.92193 0.91444 0.94440 0.89182 0.91678 0.87387 0.92978 0.89352 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 9.29 71.98 0.67 -6.28 16 2 C 0.31 16.87 3.23 44.25 0.14 17.01 16 3 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 4 C -0.55 -30.89 8.74 25.60 0.22 -30.66 16 5 H 0.06 3.18 7.79 -2.91 -0.02 3.15 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -52.78 11.32 21.45 0.24 -52.54 16 8 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.65 -30.83 6.07 -172.52 -1.05 -31.88 16 13 N -0.24 -10.44 11.50 -39.37 -0.45 -10.89 16 14 C 0.02 0.65 6.95 47.30 0.33 0.98 16 15 C 0.05 1.48 5.64 85.64 0.48 1.96 16 16 N -0.52 -12.63 5.69 -912.33 -5.20 -17.83 16 17 C 0.01 0.22 9.53 127.69 1.22 1.43 16 18 C 0.04 0.87 6.09 86.43 0.53 1.39 16 19 C -0.03 -0.76 3.58 -10.71 -0.04 -0.80 16 20 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 21 C -0.13 -2.94 9.13 71.98 0.66 -2.28 16 22 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 25 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.37 16.48 7.23 -213.31 -1.54 14.93 16 27 H 0.07 2.15 7.39 -2.39 -0.02 2.13 16 28 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.61 7.95 -2.39 -0.02 0.59 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.09 7.59 -2.39 -0.02 1.07 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.54 294.61 -0.27 -63.81 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.50 Total: 19.63 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.66 Total: -15.74 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -6.45 Total: -113.14 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -63.54 -0.27 -63.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.894 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds