Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 N 1.40100 * 119.99946 * 270.00040 * 12 2 1 14 14 C 1.28012 * 119.99797 * 179.97438 * 13 12 2 15 15 C 1.51945 * 127.13302 * 0.02916 * 14 13 12 16 16 N 1.48553 * 104.88572 * 204.02863 * 15 14 13 17 17 C 1.46907 * 110.99958 * 201.50859 * 16 15 14 18 18 C 1.48650 * 103.77593 * 320.80614 * 16 15 14 19 19 C 1.51841 * 127.13087 * 179.70795 * 14 13 12 20 20 H 1.08999 * 110.27397 * 60.72254 * 19 14 13 21 21 C 1.53001 * 110.27490 * 298.64377 * 19 14 13 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 0.97006 * 120.00569 * 89.99635 * 12 2 1 27 27 H 1.09000 * 110.35542 * 322.87817 * 15 14 13 28 28 H 1.08993 * 110.35931 * 85.07270 * 15 14 13 29 29 H 1.08997 * 109.46710 * 59.87346 * 17 16 15 30 30 H 1.08993 * 109.47172 * 179.87905 * 17 16 15 31 31 H 1.09008 * 109.46937 * 299.87540 * 17 16 15 32 32 H 1.09000 * 110.49113 * 157.28540 * 18 16 15 33 33 H 1.08998 * 110.49405 * 279.94794 * 18 16 15 34 34 H 1.09001 * 109.46964 * 61.45314 * 21 19 14 35 35 H 1.08998 * 109.46997 * 181.45109 * 21 19 14 36 36 H 1.09001 * 109.46989 * 301.45516 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 7 2.0183 -0.6906 1.1961 13 7 2.2518 0.0299 2.3747 14 6 2.6781 -0.5737 3.4200 15 6 2.9839 -2.0551 3.5632 16 7 2.8573 -2.3322 5.0171 17 6 3.5944 -3.5477 5.3876 18 6 3.4532 -1.1313 5.6594 19 6 2.9894 0.0436 4.7719 20 1 2.0947 0.5023 5.1927 21 6 4.1052 1.0817 4.6365 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7011 1.1560 -3.4844 26 1 2.1800 -1.6468 1.1721 27 1 2.2624 -2.6473 3.0002 28 1 3.9969 -2.2680 3.2218 29 1 4.6494 -3.4211 5.1445 30 1 3.4868 -3.7260 6.4574 31 1 3.1939 -4.3980 4.8354 32 1 3.0773 -1.0162 6.6761 33 1 4.5411 -1.1985 5.6591 34 1 3.7792 1.8808 3.9708 35 1 4.3357 1.4973 5.6174 36 1 4.9956 0.6064 4.2249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = 40.231173 kcal Electronic energy + Delta-G solvation = -15609.342418 eV Core-core repulsion = 13129.121995 eV Total energy + Delta-G solvation = -2480.220422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10744 -36.01085 -34.00110 -32.79019 -30.89882 -28.17789 -27.01131 -26.19354 -25.15604 -23.08134 -21.26870 -20.09832 -18.68539 -16.91304 -15.89840 -15.66158 -14.91486 -14.64304 -14.19399 -13.68814 -13.13593 -12.98291 -12.80634 -12.45604 -12.26335 -12.02465 -11.84566 -11.40801 -11.20410 -11.13621 -10.93082 -10.79752 -10.70440 -10.29530 -10.18992 -10.02360 -9.26346 -8.92667 -8.55422 -8.47947 -6.83991 -6.10839 -4.18679 2.94351 3.25286 3.31686 3.34277 3.78948 4.11736 4.37845 4.75765 5.00366 5.10360 5.21278 5.32143 5.37651 5.44983 5.61618 5.65595 5.70233 5.75581 5.79051 5.92812 6.20529 6.36058 6.40451 6.66944 6.84534 6.98562 7.06237 7.15696 7.22688 7.62357 7.84099 7.92311 8.22186 8.38323 8.90320 9.46295 9.49109 10.95043 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.005839 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.757888 B = 4793.846876 C = 5093.436849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.300 3.700 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.635 5.635 13 N -0.190 5.190 14 C -0.004 4.004 15 C 0.049 3.951 16 N -0.508 5.508 17 C 0.013 3.987 18 C 0.037 3.963 19 C -0.025 4.025 20 H 0.086 0.914 21 C -0.138 4.138 22 H 0.012 0.988 23 H 0.089 0.911 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.367 0.633 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -4.234 13.730 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.197 3.803 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.371 5.371 13 N 0.001 4.999 14 C -0.200 4.200 15 C -0.082 4.082 16 N -0.231 5.231 17 C -0.136 4.136 18 C -0.091 4.091 19 C -0.046 4.046 20 H 0.104 0.896 21 C -0.196 4.196 22 H 0.031 0.969 23 H 0.107 0.893 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.203 0.797 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.217 -3.198 13.203 14.224 hybrid contribution 1.359 -1.684 -0.975 2.373 sum 5.576 -4.881 12.228 14.298 Atomic orbital electron populations 1.22207 0.99233 0.99101 1.00425 1.18465 0.90000 0.93428 0.78365 0.94241 1.21246 1.31990 1.13233 0.90290 0.92344 1.24858 0.94882 0.95019 0.98905 1.69897 1.36104 1.22586 1.23817 0.86441 0.79140 0.79307 0.82173 1.20548 1.21028 1.19947 1.48785 1.74372 1.07525 1.06465 1.73245 1.06184 1.26909 0.93578 1.24257 1.07973 0.92698 0.95032 1.22279 1.00088 0.96103 0.89688 1.65470 1.49948 1.02219 1.05484 1.22535 0.95884 0.93513 1.01687 1.23267 0.97375 0.89844 0.98619 1.20482 0.98949 0.94757 0.90386 0.89596 1.21762 0.97703 0.98759 1.01375 0.96900 0.89284 0.95636 0.92619 0.79694 0.90249 0.93100 0.95389 0.91256 0.91326 0.89825 0.93442 0.91592 0.92697 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.29 37.16 0.35 -3.47 16 2 C 0.30 7.84 3.23 -69.09 -0.22 7.62 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.53 -14.45 8.74 -34.44 -0.30 -14.75 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.02 11.31 55.43 0.63 -24.39 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.63 -14.57 6.07 -5.88 -0.04 -14.60 16 13 N -0.19 -4.04 11.50 36.18 0.42 -3.62 16 14 C 0.00 -0.07 6.95 -77.73 -0.54 -0.61 16 15 C 0.05 0.76 5.64 -3.44 -0.02 0.74 16 16 N -0.51 -6.80 5.70 -239.72 -1.37 -8.16 16 17 C 0.01 0.14 9.53 60.07 0.57 0.71 16 18 C 0.04 0.44 6.10 -2.14 -0.01 0.42 16 19 C -0.02 -0.34 3.58 -90.49 -0.32 -0.66 16 20 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 21 C -0.14 -1.71 9.13 37.16 0.34 -1.37 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 26 H 0.37 7.94 7.23 -182.59 -1.32 6.61 16 27 H 0.08 1.30 7.39 -51.93 -0.38 0.91 16 28 H 0.05 0.77 7.96 -51.93 -0.41 0.35 16 29 H 0.03 0.28 7.96 -51.93 -0.41 -0.13 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.51 7.59 -51.93 -0.39 0.12 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 294.59 15.07 4.44 4.44 Total: -1.00 -28.84 294.59 -8.21 -37.05 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.01 Total: 2.98 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.26 Total: -9.67 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.36 Total: -50.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.84 -8.21 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.283 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds