Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 N 1.40100 * 119.99946 * 270.00040 * 12 2 1 14 14 C 1.28012 * 119.99797 * 179.97438 * 13 12 2 15 15 C 1.51945 * 127.13302 * 0.02916 * 14 13 12 16 16 N 1.48553 * 104.88572 * 204.02863 * 15 14 13 17 17 C 1.46907 * 110.99958 * 201.50859 * 16 15 14 18 18 C 1.48650 * 103.77593 * 320.80614 * 16 15 14 19 19 C 1.51841 * 127.13087 * 179.70795 * 14 13 12 20 20 H 1.08999 * 110.27397 * 60.72254 * 19 14 13 21 21 C 1.53001 * 110.27490 * 298.64377 * 19 14 13 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 0.97006 * 120.00569 * 89.99635 * 12 2 1 27 27 H 1.09000 * 110.35542 * 322.87817 * 15 14 13 28 28 H 1.08993 * 110.35931 * 85.07270 * 15 14 13 29 29 H 1.08997 * 109.46710 * 59.87346 * 17 16 15 30 30 H 1.08993 * 109.47172 * 179.87905 * 17 16 15 31 31 H 1.09008 * 109.46937 * 299.87540 * 17 16 15 32 32 H 1.09000 * 110.49113 * 157.28540 * 18 16 15 33 33 H 1.08998 * 110.49405 * 279.94794 * 18 16 15 34 34 H 1.09001 * 109.46964 * 61.45314 * 21 19 14 35 35 H 1.08998 * 109.46997 * 181.45109 * 21 19 14 36 36 H 1.09001 * 109.46989 * 301.45516 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 7 2.0183 -0.6906 1.1961 13 7 2.2518 0.0299 2.3747 14 6 2.6781 -0.5737 3.4200 15 6 2.9839 -2.0551 3.5632 16 7 2.8573 -2.3322 5.0171 17 6 3.5944 -3.5477 5.3876 18 6 3.4532 -1.1313 5.6594 19 6 2.9894 0.0436 4.7719 20 1 2.0947 0.5023 5.1927 21 6 4.1052 1.0817 4.6365 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7011 1.1560 -3.4844 26 1 2.1800 -1.6468 1.1721 27 1 2.2624 -2.6473 3.0002 28 1 3.9969 -2.2680 3.2218 29 1 4.6494 -3.4211 5.1445 30 1 3.4868 -3.7260 6.4574 31 1 3.1939 -4.3980 4.8354 32 1 3.0773 -1.0162 6.6761 33 1 4.5411 -1.1985 5.6591 34 1 3.7792 1.8808 3.9708 35 1 4.3357 1.4973 5.6174 36 1 4.9956 0.6064 4.2249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = 20.008902 kcal Electronic energy + Delta-G solvation = -15610.219321 eV Core-core repulsion = 13129.121995 eV Total energy + Delta-G solvation = -2481.097326 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29084 -37.67472 -35.70934 -34.12123 -32.70273 -29.56552 -28.32681 -27.49098 -27.19917 -24.22049 -22.71347 -21.69887 -20.19057 -18.57249 -17.52562 -16.99984 -16.67862 -15.77736 -15.49489 -15.19009 -14.53024 -14.39070 -14.14594 -13.93710 -13.69125 -13.36317 -13.07407 -12.97296 -12.82601 -12.72206 -12.35213 -12.28932 -12.17557 -12.03568 -11.86380 -11.65637 -11.11549 -10.60822 -10.56210 -9.55580 -8.56900 -8.17815 -6.34922 1.41839 1.42583 1.49827 1.53398 2.16348 2.46186 3.08457 3.10950 3.64034 3.86320 3.98210 4.22016 4.38005 4.47103 4.51504 4.64309 4.70606 4.76563 4.79694 4.82344 4.97825 5.01525 5.10069 5.14611 5.24660 5.37343 5.39698 5.54161 5.70062 5.83177 5.91720 6.03190 6.23035 6.44251 6.86237 7.36825 7.86707 8.87357 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.005839 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.757888 B = 4793.846876 C = 5093.436849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.309 3.691 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.650 5.650 13 N -0.240 5.240 14 C 0.019 3.981 15 C 0.050 3.950 16 N -0.520 5.520 17 C 0.012 3.988 18 C 0.043 3.957 19 C -0.030 4.030 20 H 0.090 0.910 21 C -0.132 4.132 22 H 0.016 0.984 23 H 0.069 0.931 24 H 0.027 0.973 25 H 0.267 0.733 26 H 0.370 0.630 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -5.452 15.323 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.206 3.794 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.195 1.195 12 N -0.387 5.387 13 N -0.047 5.047 14 C -0.178 4.178 15 C -0.082 4.082 16 N -0.244 5.244 17 C -0.137 4.137 18 C -0.084 4.084 19 C -0.051 4.051 20 H 0.108 0.892 21 C -0.191 4.191 22 H 0.035 0.965 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.206 0.794 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.376 -4.423 14.821 16.375 hybrid contribution 1.053 -1.312 -1.250 2.096 sum 6.430 -5.735 13.571 16.075 Atomic orbital electron populations 1.22023 0.99063 0.98872 0.99532 1.18063 0.90082 0.91489 0.79812 0.98301 1.21512 1.32401 1.13475 0.91237 0.92326 1.25720 0.94865 0.95660 1.01909 1.70022 1.36836 1.23750 1.24662 0.85365 0.78724 0.78199 0.78144 1.19673 1.20547 1.19458 1.48311 1.76319 1.07336 1.06723 1.73306 1.09827 1.27533 0.94031 1.25183 1.02872 0.94574 0.95139 1.22244 0.99987 0.94286 0.91652 1.65490 1.51369 1.03883 1.03637 1.22618 0.95947 0.92099 1.02994 1.23344 0.98353 0.87762 0.98974 1.20743 0.99809 0.96158 0.88354 0.89186 1.21715 0.96819 0.97683 1.02842 0.96532 0.91242 0.95340 0.92386 0.79352 0.91472 0.92444 0.94577 0.89121 0.91374 0.87257 0.91858 0.93786 0.89285 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.12 9.29 71.98 0.67 -6.45 16 2 C 0.31 16.86 3.23 44.25 0.14 17.01 16 3 H 0.00 -0.06 8.14 -2.38 -0.02 -0.07 16 4 C -0.55 -30.64 8.74 25.60 0.22 -30.42 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.72 11.31 21.45 0.24 -52.48 16 8 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.65 -30.83 6.07 -172.53 -1.05 -31.87 16 13 N -0.24 -10.44 11.50 -39.37 -0.45 -10.89 16 14 C 0.02 0.65 6.95 47.29 0.33 0.98 16 15 C 0.05 1.47 5.64 85.64 0.48 1.95 16 16 N -0.52 -12.47 5.70 -912.34 -5.20 -17.67 16 17 C 0.01 0.21 9.53 127.69 1.22 1.43 16 18 C 0.04 0.86 6.10 86.43 0.53 1.38 16 19 C -0.03 -0.75 3.58 -10.71 -0.04 -0.79 16 20 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.13 -3.02 9.13 71.98 0.66 -2.36 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.07 3.90 6.06 -2.39 -0.01 3.88 16 24 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 26 H 0.37 16.47 7.23 -213.31 -1.54 14.93 16 27 H 0.07 2.18 7.39 -2.39 -0.02 2.16 16 28 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 29 H 0.04 0.60 7.96 -2.39 -0.02 0.58 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.08 7.59 -2.39 -0.02 1.07 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 Total: -1.00 -63.34 294.59 -0.27 -63.60 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.50 Total: 19.85 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.66 Total: -15.78 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -6.45 Total: -112.91 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -63.34 -0.27 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.614 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds