Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 115.55087 * 2 1 4 4 C 1.53000 * 117.51996 * 145.70244 * 2 1 3 5 5 C 1.52997 * 60.00352 * 107.47799 * 4 2 1 6 6 H 1.08993 * 117.52250 * 252.52428 * 5 4 2 7 7 N 1.46507 * 117.49541 * 107.48681 * 5 4 2 8 8 C 1.37485 * 119.99634 * 136.38476 * 7 5 4 9 9 N 1.30332 * 120.00111 * 359.97438 * 8 7 5 10 10 N 1.37485 * 119.99492 * 180.02562 * 8 7 5 11 11 C 1.46506 * 119.99593 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47240 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00243 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46997 * 120.00167 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00161 * 18 16 14 22 22 H 1.09003 * 109.47073 * 205.66859 * 1 2 3 23 23 H 1.08996 * 109.46915 * 325.66794 * 1 2 3 24 24 H 1.08998 * 109.47156 * 85.67033 * 1 2 3 25 25 H 1.09000 * 117.49473 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.50112 * 214.97604 * 4 2 1 27 27 H 0.97004 * 119.99669 * 316.37712 * 7 5 4 28 28 H 0.97005 * 120.00180 * 0.02562 * 9 8 7 29 29 H 0.96995 * 120.00299 * 0.27160 * 10 8 7 30 30 H 1.09000 * 109.47212 * 300.00118 * 11 10 8 31 31 H 1.09001 * 109.46577 * 60.00192 * 11 10 8 32 32 H 1.09000 * 109.47486 * 300.00065 * 12 11 10 33 33 H 1.09001 * 109.47362 * 60.00788 * 12 11 10 34 34 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 35 35 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 36 36 H 0.96992 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2370 -1.1209 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 1.6112 -1.8580 -1.2689 7 7 3.4931 -0.7900 -1.4422 8 6 3.9065 -1.5303 -2.5244 9 7 3.1809 -2.5267 -2.9479 10 7 5.0860 -1.2202 -3.1591 11 6 5.5268 -2.0095 -4.3120 12 6 6.8583 -1.4594 -4.8273 13 6 7.3184 -2.2832 -6.0318 14 6 8.6302 -1.7419 -6.5390 15 1 9.0899 -0.8953 -6.0509 16 6 9.2439 -2.3282 -7.6256 17 7 8.6843 -3.3595 -8.2197 18 14 10.8695 -1.6568 -8.2548 19 1 11.2844 -0.5013 -7.4195 20 1 11.9055 -2.7182 -8.1804 21 1 10.7112 -1.2175 -9.6645 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6120 -1.8585 1.2682 26 1 3.1721 -0.8750 1.2677 27 1 4.0332 -0.0486 -1.1267 28 1 2.3489 -2.7457 -2.4998 29 1 5.6283 -0.4816 -2.8410 30 1 5.6544 -3.0498 -4.0127 31 1 4.7784 -1.9478 -5.1020 32 1 6.7303 -0.4192 -5.1267 33 1 7.6069 -1.5208 -4.0375 34 1 7.4463 -3.3236 -5.7328 35 1 6.5698 -2.2216 -6.8215 36 1 9.1159 -3.7717 -8.9843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864457309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = 38.935341 kcal Electronic energy + Delta-G solvation = -14650.742664 eV Core-core repulsion = 12170.466050 eV Total energy + Delta-G solvation = -2480.276614 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19413 -37.21359 -34.66703 -32.89565 -31.02296 -30.45738 -28.44320 -26.42758 -23.30745 -22.10016 -21.05772 -20.46128 -19.89304 -17.77027 -16.77784 -16.22651 -15.00826 -14.76147 -14.54028 -14.38633 -13.82440 -13.59459 -13.41590 -13.01389 -12.29247 -12.22990 -11.90120 -11.67191 -11.64445 -10.95267 -10.62051 -10.61337 -10.50697 -10.37730 -9.72517 -9.42768 -9.09414 -9.04947 -8.39919 -8.32650 -7.74215 -5.97256 -3.99924 2.80475 3.15171 3.32737 3.40054 3.43788 3.64657 4.09155 4.43192 4.47524 4.49119 4.62543 4.94071 5.24866 5.38443 5.41361 5.45836 5.56324 5.67055 5.82930 5.89630 5.98236 6.01360 6.34527 6.52595 6.77273 6.81572 7.06886 7.18862 7.63887 7.70778 7.84752 8.02890 8.14780 8.44297 9.07109 9.07876 9.63923 11.14111 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.083683 B = 0.003494 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.516320 B = 8011.748994 C = 8169.218615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.165 4.165 3 H 0.104 0.896 4 C -0.193 4.193 5 C 0.100 3.900 6 H 0.128 0.872 7 N -0.749 5.749 8 C 0.635 3.365 9 N -0.826 5.826 10 N -0.725 5.725 11 C 0.149 3.851 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.390 0.610 28 H 0.330 0.670 29 H 0.397 0.603 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 7.073 17.097 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 H 0.123 0.877 4 C -0.232 4.232 5 C -0.008 4.008 6 H 0.145 0.855 7 N -0.392 5.392 8 C 0.268 3.732 9 N -0.476 5.476 10 N -0.366 5.366 11 C 0.026 3.974 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.223 0.777 28 H 0.147 0.853 29 H 0.231 0.769 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.206 6.056 16.015 21.623 hybrid contribution 0.878 1.363 0.761 1.791 sum -12.328 7.419 16.776 22.100 Atomic orbital electron populations 1.21353 0.92252 1.02149 1.02171 1.22820 0.95830 0.95105 1.04726 0.87741 1.23661 1.02703 1.01516 0.95317 1.21379 0.87902 1.00855 0.90698 0.85471 1.44876 1.23931 1.36884 1.33523 1.18943 0.86984 0.85889 0.81402 1.69855 1.15611 1.22024 1.40090 1.44193 1.20403 1.37384 1.34655 1.21392 0.96217 0.94404 0.85393 1.21911 0.93689 1.00349 1.00119 1.19017 0.96010 0.95043 0.91237 1.21264 1.05963 1.15072 1.13565 0.92675 1.25033 0.97714 0.95041 0.96741 1.69981 1.39049 1.22281 1.21993 0.86541 0.83873 0.78893 0.78699 1.19804 1.21035 1.21028 0.92285 0.91989 0.91954 0.88119 0.88608 0.77689 0.85259 0.76868 0.92176 0.92155 0.93022 0.93032 0.96250 0.96242 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.19 37.16 0.38 -0.39 16 2 C -0.16 -1.22 6.33 -90.61 -0.57 -1.79 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.19 -1.45 10.10 -26.73 -0.27 -1.72 16 5 C 0.10 0.93 6.11 -67.92 -0.41 0.52 16 6 H 0.13 1.24 6.10 -51.93 -0.32 0.92 16 7 N -0.75 -8.17 5.68 -55.28 -0.31 -8.48 16 8 C 0.63 9.39 8.71 -320.10 -2.79 6.61 16 9 N -0.83 -13.88 13.21 30.15 0.40 -13.48 16 10 N -0.72 -10.88 5.67 -61.79 -0.35 -11.24 16 11 C 0.15 2.75 5.67 -4.04 -0.02 2.72 16 12 C -0.12 -2.48 5.27 -26.73 -0.14 -2.62 16 13 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.39 3.49 8.92 -40.82 -0.36 3.12 16 28 H 0.33 4.87 6.36 -40.82 -0.26 4.61 16 29 H 0.40 4.95 8.57 -40.82 -0.35 4.60 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -31.77 304.00 -10.24 -42.01 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.89 Total: 6.08 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.38 Total: -9.75 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.47 Total: -59.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.77 -10.24 -42.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864457309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.942 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds