Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 115.55087 * 2 1 4 4 C 1.53000 * 117.51996 * 145.70244 * 2 1 3 5 5 C 1.52997 * 60.00352 * 107.47799 * 4 2 1 6 6 H 1.08993 * 117.52250 * 252.52428 * 5 4 2 7 7 N 1.46507 * 117.49541 * 107.48681 * 5 4 2 8 8 C 1.37485 * 119.99634 * 136.38476 * 7 5 4 9 9 N 1.30332 * 120.00111 * 359.97438 * 8 7 5 10 10 N 1.37485 * 119.99492 * 180.02562 * 8 7 5 11 11 C 1.46506 * 119.99593 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47240 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00243 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46997 * 120.00167 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00161 * 18 16 14 22 22 H 1.09003 * 109.47073 * 205.66859 * 1 2 3 23 23 H 1.08996 * 109.46915 * 325.66794 * 1 2 3 24 24 H 1.08998 * 109.47156 * 85.67033 * 1 2 3 25 25 H 1.09000 * 117.49473 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.50112 * 214.97604 * 4 2 1 27 27 H 0.97004 * 119.99669 * 316.37712 * 7 5 4 28 28 H 0.97005 * 120.00180 * 0.02562 * 9 8 7 29 29 H 0.96995 * 120.00299 * 0.27160 * 10 8 7 30 30 H 1.09000 * 109.47212 * 300.00118 * 11 10 8 31 31 H 1.09001 * 109.46577 * 60.00192 * 11 10 8 32 32 H 1.09000 * 109.47486 * 300.00065 * 12 11 10 33 33 H 1.09001 * 109.47362 * 60.00788 * 12 11 10 34 34 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 35 35 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 36 36 H 0.96992 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2370 -1.1209 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 1.6112 -1.8580 -1.2689 7 7 3.4931 -0.7900 -1.4422 8 6 3.9065 -1.5303 -2.5244 9 7 3.1809 -2.5267 -2.9479 10 7 5.0860 -1.2202 -3.1591 11 6 5.5268 -2.0095 -4.3120 12 6 6.8583 -1.4594 -4.8273 13 6 7.3184 -2.2832 -6.0318 14 6 8.6302 -1.7419 -6.5390 15 1 9.0899 -0.8953 -6.0509 16 6 9.2439 -2.3282 -7.6256 17 7 8.6843 -3.3595 -8.2197 18 14 10.8695 -1.6568 -8.2548 19 1 11.2844 -0.5013 -7.4195 20 1 11.9055 -2.7182 -8.1804 21 1 10.7112 -1.2175 -9.6645 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6120 -1.8585 1.2682 26 1 3.1721 -0.8750 1.2677 27 1 4.0332 -0.0486 -1.1267 28 1 2.3489 -2.7457 -2.4998 29 1 5.6283 -0.4816 -2.8410 30 1 5.6544 -3.0498 -4.0127 31 1 4.7784 -1.9478 -5.1020 32 1 6.7303 -0.4192 -5.1267 33 1 7.6069 -1.5208 -4.0375 34 1 7.4463 -3.3236 -5.7328 35 1 6.5698 -2.2216 -6.8215 36 1 9.1159 -3.7717 -8.9843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864457309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = 19.970300 kcal Electronic energy + Delta-G solvation = -14651.565050 eV Core-core repulsion = 12170.466050 eV Total energy + Delta-G solvation = -2481.099000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09658 -38.26706 -36.24742 -34.67536 -32.53052 -31.75358 -29.14044 -28.20916 -25.00750 -23.10910 -22.18856 -21.65496 -21.06798 -18.92296 -18.40422 -17.61959 -16.52276 -16.30110 -15.95667 -15.62508 -14.82685 -14.58218 -14.32362 -14.19817 -13.77631 -13.60727 -13.32725 -12.87117 -12.74037 -12.49764 -12.34809 -12.27032 -11.79190 -11.45988 -11.38458 -11.15323 -10.99774 -10.53995 -10.29301 -9.43518 -8.91758 -8.17584 -6.29005 1.42440 1.42818 1.56052 1.76713 2.08179 2.43339 2.92135 3.06306 3.15912 3.77843 3.85283 4.00195 4.28136 4.34011 4.41350 4.57175 4.63529 4.75779 4.90670 4.92923 4.97407 5.06657 5.17593 5.21903 5.22625 5.37868 5.53613 5.64419 5.75824 5.87437 6.08724 6.25767 6.47710 6.88580 7.11067 7.40361 7.95297 8.94853 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.083683 B = 0.003494 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.516320 B = 8011.748994 C = 8169.218615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.151 4.151 3 H 0.111 0.889 4 C -0.181 4.181 5 C 0.073 3.927 6 H 0.119 0.881 7 N -0.736 5.736 8 C 0.634 3.366 9 N -0.866 5.866 10 N -0.719 5.719 11 C 0.168 3.832 12 C -0.103 4.103 13 C 0.025 3.975 14 C -0.540 4.540 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.279 1.279 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.402 0.598 28 H 0.337 0.663 29 H 0.412 0.588 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.063 0.937 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 8.838 18.604 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 H 0.129 0.871 4 C -0.220 4.220 5 C -0.035 4.035 6 H 0.137 0.863 7 N -0.379 5.379 8 C 0.267 3.733 9 N -0.518 5.518 10 N -0.362 5.362 11 C 0.044 3.956 12 C -0.141 4.141 13 C -0.012 4.012 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.237 0.763 28 H 0.155 0.845 29 H 0.249 0.751 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.804 7.868 17.581 23.129 hybrid contribution 0.672 0.803 0.342 1.102 sum -12.132 8.672 17.923 23.315 Atomic orbital electron populations 1.21389 0.91434 1.03030 1.02176 1.22885 0.96420 0.94892 1.02864 0.87099 1.23709 1.03027 1.01633 0.93653 1.21560 0.87596 1.02529 0.91794 0.86340 1.44704 1.24476 1.36484 1.32275 1.18866 0.86411 0.85954 0.82065 1.69813 1.16667 1.23656 1.41648 1.43864 1.20964 1.37499 1.33884 1.20879 0.94834 0.93843 0.86090 1.21610 0.94684 0.99781 0.98024 1.18922 0.95014 0.94526 0.92782 1.21720 1.06812 1.15371 1.13887 0.91675 1.26034 1.01865 0.95242 0.97039 1.70124 1.41031 1.23772 1.22639 0.85359 0.78723 0.78554 0.78145 1.18264 1.20536 1.20525 0.91711 0.90808 0.92447 0.87117 0.88202 0.76301 0.84482 0.75133 0.93951 0.93931 0.91797 0.91798 0.98977 0.98966 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.19 71.98 0.73 -0.56 16 2 C -0.15 -1.89 6.33 -10.79 -0.07 -1.96 16 3 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.18 -2.33 10.10 30.59 0.31 -2.02 16 5 C 0.07 1.25 6.11 44.99 0.27 1.53 16 6 H 0.12 2.25 6.10 -2.39 -0.01 2.24 16 7 N -0.74 -14.94 5.68 -328.81 -1.87 -16.80 16 8 C 0.63 18.30 8.71 260.54 2.27 20.57 16 9 N -0.87 -29.24 13.21 -58.54 -0.77 -30.01 16 10 N -0.72 -20.88 5.67 -349.40 -1.98 -22.86 16 11 C 0.17 6.25 5.67 86.38 0.49 6.74 16 12 C -0.10 -4.13 5.27 30.60 0.16 -3.97 16 13 C 0.03 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 18 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H 0.06 0.61 7.90 -2.39 -0.02 0.59 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 25 H 0.11 1.21 8.05 -2.39 -0.02 1.19 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.40 6.29 8.92 -92.71 -0.83 5.47 16 28 H 0.34 10.06 6.36 -92.70 -0.59 9.47 16 29 H 0.41 9.45 8.57 -92.71 -0.79 8.66 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -68.53 304.00 1.57 -66.96 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -1.13 Total: 22.40 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.01 Total: -8.44 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -4.34 Total: -127.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.53 1.57 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864457309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.926 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds