Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.53001 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46971 * 184.50902 * 4 3 2 6 6 C 1.46902 * 111.00301 * 77.61498 * 5 4 3 7 7 H 1.09002 * 109.46762 * 325.42793 * 6 5 4 8 8 C 1.50701 * 109.47223 * 205.42390 * 6 5 4 9 9 H 1.07995 * 119.99767 * 0.02562 * 8 6 5 10 10 C 1.37876 * 119.99681 * 179.97438 * 8 6 5 11 11 N 1.31516 * 119.99670 * 179.97438 * 10 8 6 12 12 Si 1.86798 * 120.00265 * 0.02562 * 10 8 6 13 13 H 1.48507 * 109.47300 * 89.99245 * 12 10 8 14 14 H 1.48499 * 109.47186 * 209.99575 * 12 10 8 15 15 H 1.48498 * 109.46985 * 329.99622 * 12 10 8 16 16 C 1.52999 * 109.46697 * 85.42510 * 6 5 4 17 17 C 1.53005 * 109.47124 * 299.27103 * 16 6 5 18 18 C 1.46899 * 111.00059 * 201.57157 * 5 4 3 19 19 C 1.52998 * 117.50443 * 138.53047 * 18 5 4 20 20 C 1.52995 * 117.49965 * 69.86747 * 18 5 4 21 21 H 1.09005 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47048 * 300.00083 * 1 2 3 23 23 H 1.09006 * 109.46674 * 60.00474 * 1 2 3 24 24 H 1.09005 * 109.47199 * 239.99751 * 2 1 3 25 25 H 1.08998 * 109.47175 * 119.99893 * 2 1 3 26 26 H 1.08998 * 109.47214 * 59.99399 * 3 2 1 27 27 H 1.08998 * 109.46948 * 300.00032 * 3 2 1 28 28 H 1.09000 * 109.47135 * 64.50624 * 4 3 2 29 29 H 1.08997 * 109.47078 * 304.50770 * 4 3 2 30 30 H 0.97001 * 119.99785 * 180.02562 * 11 10 8 31 31 H 1.08997 * 109.47326 * 59.27632 * 16 6 5 32 32 H 1.09008 * 109.47025 * 179.27681 * 16 6 5 33 33 H 1.09005 * 109.46673 * 189.93786 * 17 16 6 34 34 H 1.09000 * 109.47379 * 309.93355 * 17 16 6 35 35 H 1.08997 * 109.46893 * 69.93758 * 17 16 6 36 36 H 1.09004 * 115.54976 * 284.20227 * 18 5 4 37 37 H 1.09010 * 117.49406 * 359.97438 * 19 18 5 38 38 H 1.08999 * 117.50174 * 145.01796 * 19 18 5 39 39 H 1.09009 * 117.49766 * 214.98075 * 20 18 5 40 40 H 1.08998 * 117.50354 * 359.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8232 0.1082 6 6 3.9585 3.3103 1.4904 7 1 3.0718 2.8856 1.9612 8 6 3.8542 4.8137 1.4869 9 1 3.8620 5.3532 0.5515 10 6 3.7479 5.5001 2.6779 11 7 3.6575 6.8121 2.6749 12 14 3.7338 4.5666 4.2959 13 1 5.1252 4.4165 4.7930 14 1 2.9300 5.3175 5.2936 15 1 3.1352 3.2238 4.0874 16 6 5.2035 2.8872 2.2727 17 6 5.2994 1.3603 2.2917 18 6 5.4374 2.9339 -0.3894 19 6 5.7852 4.1571 -1.2401 20 6 5.6592 2.7794 -1.8953 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9330 1.0003 -0.9285 29 1 3.9337 0.8602 0.8459 30 1 3.5831 7.2951 3.5128 31 1 6.0911 3.3011 1.7944 32 1 5.1343 3.2596 3.2948 33 1 6.0781 1.0539 2.9902 34 1 4.3439 0.9400 2.6056 35 1 5.5446 0.9992 1.2929 36 1 6.2099 2.5471 0.2753 37 1 4.9915 4.8795 -1.4309 38 1 6.7865 4.5749 -1.1353 39 1 6.5778 2.2914 -2.2213 40 1 4.7829 2.5952 -2.5168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042490326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 29.755855 kcal Electronic energy + Delta-G solvation = -16790.879649 eV Core-core repulsion = 14413.745326 eV Total energy + Delta-G solvation = -2377.134323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.73967 -35.23568 -34.42759 -32.18762 -30.93251 -28.57155 -26.80061 -23.16178 -22.23147 -21.75212 -21.16754 -20.40990 -18.71362 -16.76719 -15.92940 -15.01434 -14.95453 -14.32974 -13.96846 -13.34344 -13.13217 -13.04667 -12.54079 -12.41612 -12.08297 -11.66945 -11.61083 -11.23599 -10.93194 -10.89142 -10.82507 -10.73188 -10.55544 -10.51752 -10.02744 -9.76074 -9.67399 -9.38220 -9.20877 -8.97443 -8.50116 -7.18549 -5.99448 -3.95100 3.27800 3.38349 3.40309 4.44232 4.48553 4.59824 5.22689 5.26618 5.31617 5.40921 5.56924 5.63958 5.67725 5.74738 5.80543 5.91757 5.95103 5.97943 6.00584 6.11063 6.11584 6.18769 6.27637 6.30723 6.40053 6.47834 6.56037 6.59329 6.65632 6.77001 6.82807 6.85902 6.92276 7.24256 7.76369 8.02779 8.19985 8.76365 9.13582 9.63855 11.14091 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.011198 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.564219 B = 2499.866293 C = 3164.046881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.037 3.963 5 N -0.492 5.492 6 C 0.191 3.809 7 H 0.037 0.963 8 C -0.488 4.488 9 H 0.083 0.917 10 C 0.067 3.933 11 N -0.902 5.902 12 Si 0.880 3.120 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.268 1.268 16 C -0.163 4.163 17 C -0.159 4.159 18 C 0.023 3.977 19 C -0.150 4.150 20 C -0.191 4.191 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -12.401 -4.728 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.091 4.091 5 N -0.216 5.216 6 C 0.083 3.917 7 H 0.055 0.945 8 C -0.526 4.526 9 H 0.101 0.899 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.226 1.226 15 H -0.193 1.193 16 C -0.202 4.202 17 C -0.216 4.216 18 C -0.086 4.086 19 C -0.187 4.187 20 C -0.229 4.229 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.197 -11.939 -4.911 12.911 hybrid contribution 0.587 -0.842 1.611 1.910 sum 0.784 -12.781 -3.300 13.223 Atomic orbital electron populations 1.21756 0.96216 1.00844 1.01960 1.21500 0.95572 0.97705 1.01247 1.21579 0.95523 0.95114 1.02955 1.22455 0.95149 0.90972 1.00500 1.61936 1.17544 1.18288 1.23783 1.19804 0.92087 0.96734 0.83055 0.94519 1.20987 1.48411 0.88580 0.94663 0.89917 1.24916 0.95304 0.94663 0.98498 1.69880 1.51319 1.06270 1.26691 0.86985 0.77427 0.80055 0.84477 1.20875 1.22558 1.19344 1.22639 1.03033 0.93349 1.01174 1.22172 1.00461 0.98340 1.00663 1.22311 0.91924 1.03177 0.91180 1.22864 1.01881 0.91182 1.02802 1.23011 1.01862 1.01986 0.95997 0.93372 0.92722 0.92807 0.92564 0.92589 0.91548 0.91798 0.92414 0.93536 0.92837 0.91379 0.93141 0.94173 0.93093 0.92530 0.89818 0.88048 0.89860 0.90013 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.58 5.93 -26.73 -0.16 -1.74 16 3 C -0.11 -1.84 5.38 -26.73 -0.14 -1.98 16 4 C 0.04 0.63 4.26 -3.82 -0.02 0.61 16 5 N -0.49 -9.97 4.37 -220.10 -0.96 -10.93 16 6 C 0.19 4.43 1.43 -68.86 -0.10 4.33 16 7 H 0.04 0.90 5.62 -51.93 -0.29 0.61 16 8 C -0.49 -13.56 9.20 -34.44 -0.32 -13.88 16 9 H 0.08 2.53 7.74 -52.49 -0.41 2.12 16 10 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 11 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 12 Si 0.88 22.02 24.38 -169.99 -4.14 17.87 16 13 H -0.28 -6.92 6.86 56.52 0.39 -6.53 16 14 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 15 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 16 C -0.16 -3.51 4.36 -26.73 -0.12 -3.62 16 17 C -0.16 -2.80 7.97 37.16 0.30 -2.50 16 18 C 0.02 0.43 3.45 -67.72 -0.23 0.19 16 19 C -0.15 -2.72 10.41 -26.70 -0.28 -3.00 16 20 C -0.19 -2.99 9.76 -26.70 -0.26 -3.25 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.67 8.14 -51.94 -0.42 0.24 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.22 6.84 -51.93 -0.36 0.86 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 29 H 0.05 0.78 3.98 -51.93 -0.21 0.57 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.07 1.47 6.12 -51.93 -0.32 1.15 16 32 H 0.05 1.17 3.26 -51.92 -0.17 1.00 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.88 7.33 -51.93 -0.38 0.50 16 35 H 0.06 0.92 5.11 -51.93 -0.27 0.65 16 36 H 0.08 1.54 4.93 -51.93 -0.26 1.29 16 37 H 0.10 2.06 7.88 -51.92 -0.41 1.65 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 296.62 15.07 4.47 4.47 Total: -1.00 -29.14 296.62 -7.77 -36.91 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.85 Total: 2.97 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -1.06 Total: -24.42 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.19 Total: -37.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.14 -7.77 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.669 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds