Wall clock time and date at job start Mon Mar 30 2020 02:51:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.47242 * 2 1
4 4 C 1.53001 * 109.47242 * 180.02562 * 3 2 1
5 5 N 1.46898 * 109.46971 * 184.50902 * 4 3 2
6 6 C 1.46902 * 111.00301 * 77.61498 * 5 4 3
7 7 H 1.09002 * 109.46762 * 325.42793 * 6 5 4
8 8 C 1.50701 * 109.47223 * 205.42390 * 6 5 4
9 9 H 1.07995 * 119.99767 * 0.02562 * 8 6 5
10 10 C 1.37876 * 119.99681 * 179.97438 * 8 6 5
11 11 N 1.31516 * 119.99670 * 179.97438 * 10 8 6
12 12 Si 1.86798 * 120.00265 * 0.02562 * 10 8 6
13 13 H 1.48507 * 109.47300 * 89.99245 * 12 10 8
14 14 H 1.48499 * 109.47186 * 209.99575 * 12 10 8
15 15 H 1.48498 * 109.46985 * 329.99622 * 12 10 8
16 16 C 1.52999 * 109.46697 * 85.42510 * 6 5 4
17 17 C 1.53005 * 109.47124 * 299.27103 * 16 6 5
18 18 C 1.46899 * 111.00059 * 201.57157 * 5 4 3
19 19 C 1.52998 * 117.50443 * 138.53047 * 18 5 4
20 20 C 1.52995 * 117.49965 * 69.86747 * 18 5 4
21 21 H 1.09005 * 109.46795 * 179.97438 * 1 2 3
22 22 H 1.08989 * 109.47048 * 300.00083 * 1 2 3
23 23 H 1.09006 * 109.46674 * 60.00474 * 1 2 3
24 24 H 1.09005 * 109.47199 * 239.99751 * 2 1 3
25 25 H 1.08998 * 109.47175 * 119.99893 * 2 1 3
26 26 H 1.08998 * 109.47214 * 59.99399 * 3 2 1
27 27 H 1.08998 * 109.46948 * 300.00032 * 3 2 1
28 28 H 1.09000 * 109.47135 * 64.50624 * 4 3 2
29 29 H 1.08997 * 109.47078 * 304.50770 * 4 3 2
30 30 H 0.97001 * 119.99785 * 180.02562 * 11 10 8
31 31 H 1.08997 * 109.47326 * 59.27632 * 16 6 5
32 32 H 1.09008 * 109.47025 * 179.27681 * 16 6 5
33 33 H 1.09005 * 109.46673 * 189.93786 * 17 16 6
34 34 H 1.09000 * 109.47379 * 309.93355 * 17 16 6
35 35 H 1.08997 * 109.46893 * 69.93758 * 17 16 6
36 36 H 1.09004 * 115.54976 * 284.20227 * 18 5 4
37 37 H 1.09010 * 117.49406 * 359.97438 * 19 18 5
38 38 H 1.08999 * 117.50174 * 145.01796 * 19 18 5
39 39 H 1.09009 * 117.49766 * 214.98075 * 20 18 5
40 40 H 1.08998 * 117.50354 * 359.97438 * 20 18 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 7 4.0597 2.8232 0.1082
6 6 3.9585 3.3103 1.4904
7 1 3.0718 2.8856 1.9612
8 6 3.8542 4.8137 1.4869
9 1 3.8620 5.3532 0.5515
10 6 3.7479 5.5001 2.6779
11 7 3.6575 6.8121 2.6749
12 14 3.7338 4.5666 4.2959
13 1 5.1252 4.4165 4.7930
14 1 2.9300 5.3175 5.2936
15 1 3.1352 3.2238 4.0874
16 6 5.2035 2.8872 2.2727
17 6 5.2994 1.3603 2.2917
18 6 5.4374 2.9339 -0.3894
19 6 5.7852 4.1571 -1.2401
20 6 5.6592 2.7794 -1.8953
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 1.8934 -0.5139 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 1.6766 1.9564 0.8899
27 1 1.6767 1.9563 -0.8900
28 1 3.9330 1.0003 -0.9285
29 1 3.9337 0.8602 0.8459
30 1 3.5831 7.2951 3.5128
31 1 6.0911 3.3011 1.7944
32 1 5.1343 3.2596 3.2948
33 1 6.0781 1.0539 2.9902
34 1 4.3439 0.9400 2.6056
35 1 5.5446 0.9992 1.2929
36 1 6.2099 2.5471 0.2753
37 1 4.9915 4.8795 -1.4309
38 1 6.7865 4.5749 -1.1353
39 1 6.5778 2.2914 -2.2213
40 1 4.7829 2.5952 -2.5168
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042490326.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:53
Heat of formation + Delta-G solvation = 11.595237 kcal
Electronic energy + Delta-G solvation = -16791.667153 eV
Core-core repulsion = 14413.745326 eV
Total energy + Delta-G solvation = -2377.921826 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.28312 -36.55641 -35.89885 -34.21665 -32.37613 -30.16900 -28.36169 -24.82893
-23.66172 -23.22366 -22.62881 -21.63890 -20.32656 -18.81103 -17.58099 -16.51561
-16.24280 -16.10866 -15.46267 -14.93331 -14.56646 -14.36365 -14.19081 -13.85612
-13.63734 -13.10615 -13.03193 -12.76367 -12.59342 -12.48306 -12.26986 -12.09881
-11.80935 -11.73559 -11.69973 -11.38074 -11.14549 -11.03078 -10.99285 -10.71608
-10.61276 -8.73729 -8.23134 -6.22499 1.27336 1.33087 1.42520 2.33064
3.06033 3.11344 3.16672 4.08191 4.14946 4.17460 4.24204 4.27228
4.30572 4.34746 4.42049 4.48738 4.60654 4.70640 4.78903 4.86431
4.87368 4.98027 5.02329 5.03458 5.06253 5.13215 5.16885 5.20302
5.25222 5.36045 5.44439 5.47881 5.55599 5.59006 5.72305 6.15235
6.63795 6.81091 6.85113 7.41058 8.94296
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.018705 B = 0.011198 C = 0.008847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1496.564219 B = 2499.866293 C = 3164.046881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.115 4.115
3 C -0.111 4.111
4 C 0.038 3.962
5 N -0.512 5.512
6 C 0.198 3.802
7 H 0.027 0.973
8 C -0.485 4.485
9 H 0.037 0.963
10 C 0.008 3.992
11 N -0.953 5.953
12 Si 0.943 3.057
13 H -0.270 1.270
14 H -0.302 1.302
15 H -0.250 1.250
16 C -0.162 4.162
17 C -0.151 4.151
18 C 0.005 3.995
19 C -0.174 4.174
20 C -0.150 4.150
21 H 0.068 0.932
22 H 0.043 0.957
23 H 0.052 0.948
24 H 0.074 0.926
25 H 0.062 0.938
26 H 0.036 0.964
27 H 0.052 0.948
28 H 0.078 0.922
29 H 0.057 0.943
30 H 0.262 0.738
31 H 0.062 0.938
32 H 0.035 0.965
33 H 0.062 0.938
34 H 0.054 0.946
35 H 0.072 0.928
36 H 0.091 0.909
37 H 0.066 0.934
38 H 0.093 0.907
39 H 0.116 0.884
40 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.302 -15.941 -4.797 16.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.153 4.153
3 C -0.150 4.150
4 C -0.089 4.089
5 N -0.235 5.235
6 C 0.090 3.910
7 H 0.045 0.955
8 C -0.524 4.524
9 H 0.055 0.945
10 C -0.188 4.188
11 N -0.595 5.595
12 Si 0.771 3.229
13 H -0.197 1.197
14 H -0.230 1.230
15 H -0.174 1.174
16 C -0.200 4.200
17 C -0.208 4.208
18 C -0.104 4.104
19 C -0.211 4.211
20 C -0.187 4.187
21 H 0.087 0.913
22 H 0.062 0.938
23 H 0.071 0.929
24 H 0.092 0.908
25 H 0.081 0.919
26 H 0.055 0.945
27 H 0.071 0.929
28 H 0.097 0.903
29 H 0.075 0.925
30 H 0.071 0.929
31 H 0.080 0.920
32 H 0.053 0.947
33 H 0.081 0.919
34 H 0.073 0.927
35 H 0.091 0.909
36 H 0.109 0.891
37 H 0.085 0.915
38 H 0.111 0.889
39 H 0.135 0.865
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 0.974 -15.511 -5.001 16.327
hybrid contribution 0.328 0.329 1.491 1.562
sum 1.302 -15.182 -3.510 15.637
Atomic orbital electron populations
1.21761 0.95532 1.02057 1.01467 1.21450 0.96171 0.95265 1.02399
1.21560 0.95291 0.97154 1.00963 1.22550 0.95341 0.89079 1.01903
1.61777 1.19098 1.20764 1.21857 1.19500 0.92679 0.93418 0.85430
0.95505 1.21263 1.46963 0.91401 0.92797 0.94468 1.25727 0.95309
0.95361 1.02407 1.70047 1.53610 1.08229 1.27616 0.85935 0.77940
0.79333 0.79650 1.19685 1.22990 1.17361 1.22502 1.01464 0.96611
0.99472 1.22079 1.01588 0.94685 1.02402 1.22430 0.91143 1.03606
0.93175 1.22816 1.01279 0.91864 1.05187 1.23065 1.03318 0.98789
0.93526 0.91273 0.93761 0.92866 0.90778 0.91939 0.94481 0.92904
0.90331 0.92511 0.92917 0.91962 0.94704 0.91930 0.92687 0.90931
0.89128 0.91535 0.88903 0.86534 0.88857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.23 9.91 71.98 0.71 -2.51 16
2 C -0.11 -2.65 5.93 30.59 0.18 -2.47 16
3 C -0.11 -3.46 5.38 30.59 0.16 -3.30 16
4 C 0.04 1.21 4.26 86.30 0.37 1.58 16
5 N -0.51 -20.38 4.37 -850.28 -3.72 -24.10 16
6 C 0.20 9.17 1.43 44.17 0.06 9.23 16
7 H 0.03 1.31 5.62 -2.39 -0.01 1.30 16
8 C -0.49 -28.04 9.20 25.60 0.24 -27.81 16
9 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16
10 C 0.01 0.47 5.45 84.65 0.46 0.93 16
11 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16
12 Si 0.94 45.98 24.38 68.60 1.67 47.66 16
13 H -0.27 -12.61 6.86 99.48 0.68 -11.93 16
14 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16
15 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16
16 C -0.16 -6.67 4.36 30.60 0.13 -6.54 16
17 C -0.15 -4.72 7.97 71.98 0.57 -4.14 16
18 C 0.01 0.18 3.45 44.91 0.15 0.34 16
19 C -0.17 -6.34 10.41 30.62 0.32 -6.02 16
20 C -0.15 -4.27 9.76 30.62 0.30 -3.97 16
21 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16
22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
23 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16
24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16
25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
26 H 0.04 1.35 6.84 -2.39 -0.02 1.33 16
27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
28 H 0.08 2.16 7.37 -2.39 -0.02 2.14 16
29 H 0.06 1.70 3.98 -2.39 -0.01 1.69 16
30 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16
31 H 0.06 2.61 6.12 -2.39 -0.01 2.60 16
32 H 0.03 1.54 3.26 -2.38 -0.01 1.53 16
33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16
34 H 0.05 1.69 7.33 -2.39 -0.02 1.67 16
35 H 0.07 2.04 5.11 -2.39 -0.01 2.03 16
36 H 0.09 3.11 4.93 -2.38 -0.01 3.10 16
37 H 0.07 2.87 7.88 -2.38 -0.02 2.85 16
38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16
39 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16
40 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
Total: -1.00 -65.84 296.62 2.83 -63.01
By element:
Atomic # 1 Polarization: 17.88 SS G_CDS: 0.91 Total: 18.79 kcal
Atomic # 6 Polarization: -48.36 SS G_CDS: 3.67 Total: -44.70 kcal
Atomic # 7 Polarization: -81.34 SS G_CDS: -3.42 Total: -84.76 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.66 kcal
Total: -65.84 2.83 -63.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042490326.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.604 kcal
(2) G-P(sol) polarization free energy of solvation -65.841 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.009 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.595 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds