Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.53001 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46971 * 184.50902 * 4 3 2 6 6 C 1.46902 * 111.00301 * 77.61498 * 5 4 3 7 7 H 1.09002 * 109.46762 * 325.42793 * 6 5 4 8 8 C 1.50701 * 109.47223 * 205.42390 * 6 5 4 9 9 H 1.07995 * 119.99767 * 0.02562 * 8 6 5 10 10 C 1.37876 * 119.99681 * 179.97438 * 8 6 5 11 11 N 1.31516 * 119.99670 * 179.97438 * 10 8 6 12 12 Si 1.86798 * 120.00265 * 0.02562 * 10 8 6 13 13 H 1.48507 * 109.47300 * 89.99245 * 12 10 8 14 14 H 1.48499 * 109.47186 * 209.99575 * 12 10 8 15 15 H 1.48498 * 109.46985 * 329.99622 * 12 10 8 16 16 C 1.52999 * 109.46697 * 85.42510 * 6 5 4 17 17 C 1.53005 * 109.47124 * 299.27103 * 16 6 5 18 18 C 1.46899 * 111.00059 * 201.57157 * 5 4 3 19 19 C 1.52998 * 117.50443 * 138.53047 * 18 5 4 20 20 C 1.52995 * 117.49965 * 69.86747 * 18 5 4 21 21 H 1.09005 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47048 * 300.00083 * 1 2 3 23 23 H 1.09006 * 109.46674 * 60.00474 * 1 2 3 24 24 H 1.09005 * 109.47199 * 239.99751 * 2 1 3 25 25 H 1.08998 * 109.47175 * 119.99893 * 2 1 3 26 26 H 1.08998 * 109.47214 * 59.99399 * 3 2 1 27 27 H 1.08998 * 109.46948 * 300.00032 * 3 2 1 28 28 H 1.09000 * 109.47135 * 64.50624 * 4 3 2 29 29 H 1.08997 * 109.47078 * 304.50770 * 4 3 2 30 30 H 0.97001 * 119.99785 * 180.02562 * 11 10 8 31 31 H 1.08997 * 109.47326 * 59.27632 * 16 6 5 32 32 H 1.09008 * 109.47025 * 179.27681 * 16 6 5 33 33 H 1.09005 * 109.46673 * 189.93786 * 17 16 6 34 34 H 1.09000 * 109.47379 * 309.93355 * 17 16 6 35 35 H 1.08997 * 109.46893 * 69.93758 * 17 16 6 36 36 H 1.09004 * 115.54976 * 284.20227 * 18 5 4 37 37 H 1.09010 * 117.49406 * 359.97438 * 19 18 5 38 38 H 1.08999 * 117.50174 * 145.01796 * 19 18 5 39 39 H 1.09009 * 117.49766 * 214.98075 * 20 18 5 40 40 H 1.08998 * 117.50354 * 359.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8232 0.1082 6 6 3.9585 3.3103 1.4904 7 1 3.0718 2.8856 1.9612 8 6 3.8542 4.8137 1.4869 9 1 3.8620 5.3532 0.5515 10 6 3.7479 5.5001 2.6779 11 7 3.6575 6.8121 2.6749 12 14 3.7338 4.5666 4.2959 13 1 5.1252 4.4165 4.7930 14 1 2.9300 5.3175 5.2936 15 1 3.1352 3.2238 4.0874 16 6 5.2035 2.8872 2.2727 17 6 5.2994 1.3603 2.2917 18 6 5.4374 2.9339 -0.3894 19 6 5.7852 4.1571 -1.2401 20 6 5.6592 2.7794 -1.8953 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9330 1.0003 -0.9285 29 1 3.9337 0.8602 0.8459 30 1 3.5831 7.2951 3.5128 31 1 6.0911 3.3011 1.7944 32 1 5.1343 3.2596 3.2948 33 1 6.0781 1.0539 2.9902 34 1 4.3439 0.9400 2.6056 35 1 5.5446 0.9992 1.2929 36 1 6.2099 2.5471 0.2753 37 1 4.9915 4.8795 -1.4309 38 1 6.7865 4.5749 -1.1353 39 1 6.5778 2.2914 -2.2213 40 1 4.7829 2.5952 -2.5168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042490326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = 11.595237 kcal Electronic energy + Delta-G solvation = -16791.667153 eV Core-core repulsion = 14413.745326 eV Total energy + Delta-G solvation = -2377.921826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28312 -36.55641 -35.89885 -34.21665 -32.37613 -30.16900 -28.36169 -24.82893 -23.66172 -23.22366 -22.62881 -21.63890 -20.32656 -18.81103 -17.58099 -16.51561 -16.24280 -16.10866 -15.46267 -14.93331 -14.56646 -14.36365 -14.19081 -13.85612 -13.63734 -13.10615 -13.03193 -12.76367 -12.59342 -12.48306 -12.26986 -12.09881 -11.80935 -11.73559 -11.69973 -11.38074 -11.14549 -11.03078 -10.99285 -10.71608 -10.61276 -8.73729 -8.23134 -6.22499 1.27336 1.33087 1.42520 2.33064 3.06033 3.11344 3.16672 4.08191 4.14946 4.17460 4.24204 4.27228 4.30572 4.34746 4.42049 4.48738 4.60654 4.70640 4.78903 4.86431 4.87368 4.98027 5.02329 5.03458 5.06253 5.13215 5.16885 5.20302 5.25222 5.36045 5.44439 5.47881 5.55599 5.59006 5.72305 6.15235 6.63795 6.81091 6.85113 7.41058 8.94296 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.011198 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.564219 B = 2499.866293 C = 3164.046881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.038 3.962 5 N -0.512 5.512 6 C 0.198 3.802 7 H 0.027 0.973 8 C -0.485 4.485 9 H 0.037 0.963 10 C 0.008 3.992 11 N -0.953 5.953 12 Si 0.943 3.057 13 H -0.270 1.270 14 H -0.302 1.302 15 H -0.250 1.250 16 C -0.162 4.162 17 C -0.151 4.151 18 C 0.005 3.995 19 C -0.174 4.174 20 C -0.150 4.150 21 H 0.068 0.932 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -15.941 -4.797 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.150 4.150 4 C -0.089 4.089 5 N -0.235 5.235 6 C 0.090 3.910 7 H 0.045 0.955 8 C -0.524 4.524 9 H 0.055 0.945 10 C -0.188 4.188 11 N -0.595 5.595 12 Si 0.771 3.229 13 H -0.197 1.197 14 H -0.230 1.230 15 H -0.174 1.174 16 C -0.200 4.200 17 C -0.208 4.208 18 C -0.104 4.104 19 C -0.211 4.211 20 C -0.187 4.187 21 H 0.087 0.913 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.974 -15.511 -5.001 16.327 hybrid contribution 0.328 0.329 1.491 1.562 sum 1.302 -15.182 -3.510 15.637 Atomic orbital electron populations 1.21761 0.95532 1.02057 1.01467 1.21450 0.96171 0.95265 1.02399 1.21560 0.95291 0.97154 1.00963 1.22550 0.95341 0.89079 1.01903 1.61777 1.19098 1.20764 1.21857 1.19500 0.92679 0.93418 0.85430 0.95505 1.21263 1.46963 0.91401 0.92797 0.94468 1.25727 0.95309 0.95361 1.02407 1.70047 1.53610 1.08229 1.27616 0.85935 0.77940 0.79333 0.79650 1.19685 1.22990 1.17361 1.22502 1.01464 0.96611 0.99472 1.22079 1.01588 0.94685 1.02402 1.22430 0.91143 1.03606 0.93175 1.22816 1.01279 0.91864 1.05187 1.23065 1.03318 0.98789 0.93526 0.91273 0.93761 0.92866 0.90778 0.91939 0.94481 0.92904 0.90331 0.92511 0.92917 0.91962 0.94704 0.91930 0.92687 0.90931 0.89128 0.91535 0.88903 0.86534 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.51 16 2 C -0.11 -2.65 5.93 30.59 0.18 -2.47 16 3 C -0.11 -3.46 5.38 30.59 0.16 -3.30 16 4 C 0.04 1.21 4.26 86.30 0.37 1.58 16 5 N -0.51 -20.38 4.37 -850.28 -3.72 -24.10 16 6 C 0.20 9.17 1.43 44.17 0.06 9.23 16 7 H 0.03 1.31 5.62 -2.39 -0.01 1.30 16 8 C -0.49 -28.04 9.20 25.60 0.24 -27.81 16 9 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 10 C 0.01 0.47 5.45 84.65 0.46 0.93 16 11 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 12 Si 0.94 45.98 24.38 68.60 1.67 47.66 16 13 H -0.27 -12.61 6.86 99.48 0.68 -11.93 16 14 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 15 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 16 C -0.16 -6.67 4.36 30.60 0.13 -6.54 16 17 C -0.15 -4.72 7.97 71.98 0.57 -4.14 16 18 C 0.01 0.18 3.45 44.91 0.15 0.34 16 19 C -0.17 -6.34 10.41 30.62 0.32 -6.02 16 20 C -0.15 -4.27 9.76 30.62 0.30 -3.97 16 21 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.35 6.84 -2.39 -0.02 1.33 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.16 7.37 -2.39 -0.02 2.14 16 29 H 0.06 1.70 3.98 -2.39 -0.01 1.69 16 30 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.06 2.61 6.12 -2.39 -0.01 2.60 16 32 H 0.03 1.54 3.26 -2.38 -0.01 1.53 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.05 1.69 7.33 -2.39 -0.02 1.67 16 35 H 0.07 2.04 5.11 -2.39 -0.01 2.03 16 36 H 0.09 3.11 4.93 -2.38 -0.01 3.10 16 37 H 0.07 2.87 7.88 -2.38 -0.02 2.85 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -65.84 296.62 2.83 -63.01 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.91 Total: 18.79 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 3.67 Total: -44.70 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.42 Total: -84.76 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.66 kcal Total: -65.84 2.83 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.604 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds