Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46611 * 2 1 4 4 C 1.53008 * 109.46608 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46635 * 177.61963 * 4 3 2 6 6 C 1.46900 * 110.99358 * 212.64309 * 5 4 3 7 7 H 1.08993 * 109.47503 * 52.74105 * 6 5 4 8 8 C 1.50709 * 109.46701 * 172.73855 * 6 5 4 9 9 H 1.07998 * 120.00012 * 4.63689 * 8 6 5 10 10 C 1.37880 * 119.99973 * 184.63857 * 8 6 5 11 11 N 1.31509 * 119.99998 * 195.58628 * 10 8 6 12 12 Si 1.86797 * 119.99700 * 15.58891 * 10 8 6 13 13 H 1.48497 * 109.47541 * 92.37031 * 12 10 8 14 14 H 1.48500 * 109.46913 * 212.36910 * 12 10 8 15 15 H 1.48499 * 109.47363 * 332.36750 * 12 10 8 16 16 C 1.52996 * 109.47308 * 292.73381 * 6 5 4 17 17 C 1.53000 * 109.47027 * 75.56136 * 16 6 5 18 18 C 1.46892 * 111.00151 * 88.68778 * 5 4 3 19 19 C 1.52997 * 117.51820 * 221.06278 * 18 5 4 20 20 C 1.52999 * 60.00198 * 107.48422 * 19 18 5 21 21 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47646 * 299.99483 * 1 2 3 23 23 H 1.08998 * 109.47531 * 60.00184 * 1 2 3 24 24 H 1.09000 * 109.47130 * 240.00624 * 2 1 3 25 25 H 1.08992 * 109.47127 * 119.99915 * 2 1 3 26 26 H 1.09000 * 109.46864 * 60.00461 * 3 2 1 27 27 H 1.08992 * 109.47306 * 299.99805 * 3 2 1 28 28 H 1.09001 * 109.46922 * 57.62124 * 4 3 2 29 29 H 1.08998 * 109.47210 * 297.61708 * 4 3 2 30 30 H 0.97005 * 119.99875 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.47777 * 195.56188 * 16 6 5 32 32 H 1.09007 * 109.47112 * 315.56504 * 16 6 5 33 33 H 1.09002 * 109.47150 * 169.15173 * 17 16 6 34 34 H 1.08999 * 109.47406 * 289.15148 * 17 16 6 35 35 H 1.08998 * 109.46968 * 49.15026 * 17 16 6 36 36 H 1.09001 * 115.54791 * 75.36627 * 18 5 4 37 37 H 1.09000 * 117.50179 * 214.96979 * 19 18 5 38 38 H 1.08996 * 117.50050 * 359.97438 * 19 18 5 39 39 H 1.09000 * 117.50153 * 252.51422 * 20 19 18 40 40 H 1.08998 * 117.50079 * 107.48815 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8264 -0.0569 6 6 5.3241 2.9068 -0.8001 7 1 5.2047 2.4303 -1.7731 8 6 5.7027 4.3529 -0.9922 9 1 5.1084 5.1317 -0.5376 10 6 6.8078 4.6816 -1.7483 11 7 7.3207 5.8902 -1.6724 12 14 7.5765 3.4102 -2.8805 13 1 6.9839 3.5320 -4.2366 14 1 9.0418 3.6383 -2.9584 15 1 7.3152 2.0494 -2.3466 16 6 6.4244 2.1918 -0.0135 17 6 6.2455 0.6782 -0.1474 18 6 4.2048 3.3900 1.2918 19 6 3.7610 4.8387 1.5042 20 6 2.9244 3.6910 2.0734 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6765 1.9563 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.8921 -0.8670 29 1 3.9329 0.9663 0.9114 30 1 8.0984 6.1213 -2.2041 31 1 7.3988 2.4788 -0.4087 32 1 6.3613 2.4735 1.0376 33 1 7.1274 0.1720 0.2453 34 1 5.3661 0.3650 0.4154 35 1 6.1156 0.4192 -1.1981 36 1 5.0689 3.0404 1.8568 37 1 4.3330 5.4421 2.2090 38 1 3.3614 5.3741 0.6430 39 1 1.9742 3.4712 1.5867 40 1 2.9461 3.5394 3.1526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042490327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = 25.279725 kcal Electronic energy + Delta-G solvation = -16704.856756 eV Core-core repulsion = 14327.528333 eV Total energy + Delta-G solvation = -2377.328423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.62480 -34.98722 -34.70951 -32.22143 -30.79021 -28.82337 -26.50790 -23.09108 -22.20168 -21.80077 -21.19050 -20.52508 -18.65058 -16.70373 -15.75527 -15.39635 -14.57418 -14.25615 -13.82609 -13.53567 -13.22135 -12.86014 -12.48475 -12.38481 -12.07324 -11.69899 -11.60959 -11.18681 -11.07585 -10.93058 -10.85217 -10.67356 -10.60874 -10.32388 -10.13990 -9.79324 -9.47205 -9.42956 -9.18809 -9.03026 -8.30192 -7.24388 -6.02457 -3.94186 3.31578 3.41064 3.44264 4.47782 4.56830 4.62577 5.14381 5.20551 5.28141 5.33686 5.56598 5.59210 5.71341 5.85001 5.88287 5.91328 5.94048 6.01594 6.02976 6.08538 6.16607 6.19060 6.24870 6.34251 6.40731 6.57875 6.60188 6.64544 6.70759 6.78239 6.85305 6.94582 6.97522 7.37669 7.70524 8.03986 8.23419 8.74218 9.14003 9.64215 11.10228 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026510 B = 0.009069 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.971478 B = 3086.861625 C = 3589.962889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.055 3.945 5 N -0.497 5.497 6 C 0.194 3.806 7 H 0.035 0.965 8 C -0.504 4.504 9 H 0.087 0.913 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.856 3.144 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.254 1.254 16 C -0.156 4.156 17 C -0.166 4.166 18 C 0.035 3.965 19 C -0.147 4.147 20 C -0.197 4.197 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -10.061 5.010 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.073 4.073 5 N -0.220 5.220 6 C 0.087 3.913 7 H 0.052 0.948 8 C -0.541 4.541 9 H 0.105 0.895 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.684 3.316 13 H -0.208 1.208 14 H -0.217 1.217 15 H -0.178 1.178 16 C -0.196 4.196 17 C -0.223 4.223 18 C -0.074 4.074 19 C -0.184 4.184 20 C -0.234 4.234 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.616 -9.655 4.676 13.759 hybrid contribution 1.319 -1.066 -0.331 1.728 sum -7.296 -10.721 4.345 13.676 Atomic orbital electron populations 1.21752 0.96282 1.00923 1.01727 1.21514 0.95440 0.97827 1.01447 1.21812 0.96120 0.95225 1.02630 1.22316 0.94437 0.90886 0.99703 1.61932 1.31077 1.16224 1.12745 1.19761 0.82977 0.97114 0.91469 0.94772 1.21032 1.10918 0.90529 1.31663 0.89492 1.24863 0.96073 0.94986 0.96900 1.69967 1.22743 1.20334 1.40240 0.87289 0.78362 0.83875 0.82123 1.20792 1.21674 1.17790 1.22618 1.02233 0.93114 1.01601 1.22299 1.00629 0.98368 1.00982 1.22117 0.95372 0.98977 0.90934 1.22817 1.02126 0.91323 1.02142 1.23174 0.96273 1.05874 0.98121 0.93334 0.92949 0.92809 0.92405 0.92575 0.91666 0.91661 0.91879 0.94723 0.92893 0.92265 0.92549 0.94496 0.92391 0.93440 0.90213 0.89821 0.88250 0.88685 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.12 -1.74 5.27 -26.73 -0.14 -1.88 16 4 C 0.05 0.92 3.21 -3.82 -0.01 0.91 16 5 N -0.50 -10.07 4.46 -220.10 -0.98 -11.05 16 6 C 0.19 4.50 1.44 -68.86 -0.10 4.40 16 7 H 0.03 0.83 6.27 -51.93 -0.33 0.51 16 8 C -0.50 -13.80 8.62 -34.44 -0.30 -14.10 16 9 H 0.09 2.57 5.96 -52.49 -0.31 2.26 16 10 C 0.07 2.08 5.24 -17.82 -0.09 1.99 16 11 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 12 Si 0.86 21.14 25.75 -169.99 -4.38 16.76 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.25 -5.87 5.28 56.52 0.30 -5.57 16 16 C -0.16 -3.36 4.38 -26.73 -0.12 -3.47 16 17 C -0.17 -2.98 8.40 37.16 0.31 -2.67 16 18 C 0.03 0.67 3.86 -67.72 -0.26 0.41 16 19 C -0.15 -2.75 9.05 -26.73 -0.24 -2.99 16 20 C -0.20 -3.14 9.58 -26.73 -0.26 -3.40 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.93 5.25 -51.93 -0.27 0.66 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.08 6.42 -51.93 -0.33 0.75 16 29 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 1.38 5.31 -51.93 -0.28 1.10 16 32 H 0.06 1.19 5.54 -51.92 -0.29 0.91 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.95 4.73 -51.93 -0.25 0.70 16 35 H 0.05 0.86 7.60 -51.93 -0.39 0.47 16 36 H 0.08 1.57 5.89 -51.93 -0.31 1.27 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.10 2.04 7.65 -51.93 -0.40 1.64 16 39 H 0.09 1.47 5.90 -51.93 -0.31 1.17 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -28.71 292.82 -7.99 -36.70 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.82 Total: 3.12 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -1.00 Total: -23.64 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.21 Total: -37.36 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.38 Total: 16.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.71 -7.99 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.984 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds