Wall clock time and date at job start Mon Mar 30 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 H 1.09003 * 109.47362 * 305.00334 * 3 2 1 5 5 C 1.52996 * 109.47052 * 65.00391 * 3 2 1 6 6 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46622 * 299.99893 * 6 5 3 8 8 C 1.53000 * 109.47766 * 59.99868 * 7 6 5 9 9 C 1.53000 * 109.46791 * 300.00200 * 8 7 6 10 10 H 1.08995 * 109.47201 * 299.99704 * 9 8 7 11 11 N 1.46908 * 109.46974 * 179.97438 * 9 8 7 12 12 C 1.46894 * 110.99837 * 85.00191 * 11 9 8 13 13 H 1.09002 * 109.47104 * 324.99694 * 12 11 9 14 14 C 1.52997 * 109.47515 * 84.99962 * 12 11 9 15 15 C 1.50699 * 109.46922 * 205.00026 * 12 11 9 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00079 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 119.99984 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47308 * 89.99475 * 19 17 15 21 21 H 1.48501 * 109.47369 * 209.99550 * 19 17 15 22 22 H 1.48502 * 109.47235 * 329.99718 * 19 17 15 23 23 H 1.09001 * 109.47208 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47831 * 60.00168 * 1 2 3 25 25 H 1.09008 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47208 * 240.00153 * 2 1 3 27 27 H 1.09000 * 109.47741 * 120.00579 * 2 1 3 28 28 H 1.09007 * 109.47146 * 299.99919 * 5 3 2 29 29 H 1.08995 * 109.47374 * 59.99791 * 5 3 2 30 30 H 1.08999 * 109.46855 * 59.99341 * 6 5 3 31 31 H 1.08995 * 109.46930 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46935 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.47184 * 299.99601 * 7 6 5 34 34 H 1.08994 * 109.47444 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46643 * 59.99258 * 8 7 6 36 36 H 1.00898 * 110.99816 * 321.04272 * 11 9 8 37 37 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1447 3.5692 1.3072 7 6 3.6695 3.5715 1.1811 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4448 -0.1260 10 1 3.9997 0.9060 0.7157 11 7 3.9529 0.7882 -1.3816 12 6 5.3132 0.2412 -1.2908 13 1 5.9290 0.8986 -0.6770 14 6 5.2623 -1.1498 -0.6557 15 6 5.9075 0.1412 -2.6721 16 1 5.3321 0.4525 -3.5314 17 6 7.1859 -0.3476 -2.8388 18 7 7.7044 -0.4353 -4.0443 19 14 8.1809 -0.8868 -1.3527 20 1 7.9320 -2.3263 -1.0860 21 1 9.6261 -0.6758 -1.6215 22 1 7.7756 -0.0869 -0.1689 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5489 2.1252 1.3970 29 1 2.0699 1.5874 2.1491 30 1 1.7098 4.1079 0.4654 31 1 1.8560 4.0565 2.2384 32 1 4.0325 4.5993 1.1814 33 1 4.1045 3.0326 2.0229 34 1 5.1605 2.8895 -0.2162 35 1 3.6392 3.4263 -0.9680 36 1 3.8694 1.4222 -2.1620 37 1 4.6465 -1.8072 -1.2695 38 1 4.8324 -1.0775 0.3434 39 1 6.2716 -1.5559 -0.5888 40 1 8.6036 -0.7796 -4.1616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042579070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:56 Heat of formation + Delta-G solvation = -30.970152 kcal Electronic energy + Delta-G solvation = -16635.606656 eV Core-core repulsion = 14255.839056 eV Total energy + Delta-G solvation = -2379.767600 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04516 -35.37496 -33.63874 -32.37027 -30.27937 -28.88537 -26.92095 -24.98414 -23.55264 -21.70255 -20.36212 -19.74980 -19.51023 -16.77749 -15.39504 -15.08124 -14.52918 -14.08627 -13.86105 -13.72251 -13.08895 -13.00105 -12.74821 -12.58918 -12.40202 -12.09619 -11.43755 -11.32163 -11.19887 -11.11220 -10.77927 -10.74636 -10.64450 -10.48697 -10.11993 -10.04946 -9.86848 -9.70423 -9.38304 -8.98477 -8.59053 -7.35835 -6.08341 -4.07515 3.27726 3.37074 3.39501 4.39867 4.82152 4.90872 4.99451 5.24587 5.27840 5.37713 5.42239 5.51906 5.63159 5.70772 5.75964 5.80336 5.86873 5.98140 6.00760 6.20536 6.23807 6.26819 6.30749 6.33304 6.43272 6.46078 6.52725 6.57196 6.63039 6.75166 6.84664 6.90730 6.91431 7.43940 7.61912 8.01762 8.42171 8.66243 8.97354 9.54635 11.04784 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.007854 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.835760 B = 3564.020293 C = 3938.012863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.071 4.071 4 H 0.065 0.935 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.149 4.149 9 C 0.091 3.909 10 H 0.067 0.933 11 N -0.672 5.672 12 C 0.183 3.817 13 H 0.000 1.000 14 C -0.136 4.136 15 C -0.518 4.518 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.269 1.269 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.338 0.662 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 5.122 11.006 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.090 4.090 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.188 4.188 9 C -0.020 4.020 10 H 0.086 0.914 11 N -0.301 5.301 12 C 0.074 3.926 13 H 0.017 0.983 14 C -0.194 4.194 15 C -0.556 4.556 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.194 1.194 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.152 4.449 11.037 16.309 hybrid contribution 1.266 0.450 0.682 1.507 sum -9.885 4.899 11.719 16.096 Atomic orbital electron populations 1.21837 0.97186 1.00798 1.01029 1.21453 0.94030 0.96563 1.02967 1.21097 0.95353 0.95963 0.96632 0.91697 1.21648 1.00098 0.95378 0.98178 1.21527 0.95945 0.97044 1.00998 1.21484 0.95694 0.99963 0.98196 1.22294 1.01349 0.97829 0.97304 1.21579 0.94184 0.91721 0.94490 0.91440 1.60579 1.27853 1.38610 1.03069 1.19492 0.85146 0.91300 0.96672 0.98251 1.22074 0.99086 1.00117 0.98125 1.21131 0.99462 1.43212 0.91774 0.90423 1.24934 0.97453 0.95142 0.95596 1.69895 1.16207 1.46482 1.21210 0.86811 0.78322 0.79155 0.83585 1.20573 1.22626 1.19425 0.93391 0.93133 0.93447 0.89798 0.93114 0.92159 0.92402 0.92258 0.92717 0.92679 0.92387 0.91857 0.92124 0.84364 0.92433 0.95652 0.94700 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 37.15 0.36 -1.42 16 2 C -0.11 -1.59 5.32 -26.73 -0.14 -1.73 16 3 C -0.07 -1.00 1.90 -90.62 -0.17 -1.17 16 4 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.12 -1.37 4.96 -26.73 -0.13 -1.51 16 6 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 7 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 8 C -0.15 -2.30 5.16 -26.73 -0.14 -2.44 16 9 C 0.09 1.51 1.72 -67.71 -0.12 1.39 16 10 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 11 N -0.67 -13.38 5.20 -100.96 -0.52 -13.91 16 12 C 0.18 4.31 2.00 -68.87 -0.14 4.17 16 13 H 0.00 0.00 6.17 -51.93 -0.32 -0.32 16 14 C -0.14 -3.07 8.88 37.16 0.33 -2.74 16 15 C -0.52 -14.47 9.17 -34.44 -0.32 -14.78 16 16 H 0.08 2.34 7.86 -52.48 -0.41 1.93 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 19 Si 0.89 22.31 24.37 -169.99 -4.14 18.17 16 20 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 21 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 23 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.08 1.38 7.45 -51.93 -0.39 1.00 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.10 7.43 -51.93 -0.39 0.72 16 35 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.34 6.87 7.96 -39.29 -0.31 6.55 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.50 7.43 -51.93 -0.39 0.11 16 39 H 0.03 0.81 3.27 -51.93 -0.17 0.64 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -28.72 295.79 -7.57 -36.30 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.26 Total: 3.19 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -0.88 Total: -21.41 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.25 Total: -40.70 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.72 -7.57 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042579070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.327 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds