Wall clock time and date at job start Mon Mar 30 2020 03:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 H 1.09003 * 109.47362 * 305.00334 * 3 2 1 5 5 C 1.52996 * 109.47052 * 65.00391 * 3 2 1 6 6 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46622 * 299.99893 * 6 5 3 8 8 C 1.53000 * 109.47766 * 59.99868 * 7 6 5 9 9 C 1.53000 * 109.46791 * 300.00200 * 8 7 6 10 10 H 1.08995 * 109.47201 * 299.99704 * 9 8 7 11 11 N 1.46908 * 109.46974 * 179.97438 * 9 8 7 12 12 C 1.46894 * 110.99837 * 85.00191 * 11 9 8 13 13 H 1.09002 * 109.47104 * 324.99694 * 12 11 9 14 14 C 1.52997 * 109.47515 * 84.99962 * 12 11 9 15 15 C 1.50699 * 109.46922 * 205.00026 * 12 11 9 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00079 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 119.99984 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47308 * 89.99475 * 19 17 15 21 21 H 1.48501 * 109.47369 * 209.99550 * 19 17 15 22 22 H 1.48502 * 109.47235 * 329.99718 * 19 17 15 23 23 H 1.09001 * 109.47208 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47831 * 60.00168 * 1 2 3 25 25 H 1.09008 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47208 * 240.00153 * 2 1 3 27 27 H 1.09000 * 109.47741 * 120.00579 * 2 1 3 28 28 H 1.09007 * 109.47146 * 299.99919 * 5 3 2 29 29 H 1.08995 * 109.47374 * 59.99791 * 5 3 2 30 30 H 1.08999 * 109.46855 * 59.99341 * 6 5 3 31 31 H 1.08995 * 109.46930 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46935 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.47184 * 299.99601 * 7 6 5 34 34 H 1.08994 * 109.47444 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46643 * 59.99258 * 8 7 6 36 36 H 1.00898 * 110.99816 * 321.04272 * 11 9 8 37 37 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1447 3.5692 1.3072 7 6 3.6695 3.5715 1.1811 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4448 -0.1260 10 1 3.9997 0.9060 0.7157 11 7 3.9529 0.7882 -1.3816 12 6 5.3132 0.2412 -1.2908 13 1 5.9290 0.8986 -0.6770 14 6 5.2623 -1.1498 -0.6557 15 6 5.9075 0.1412 -2.6721 16 1 5.3321 0.4525 -3.5314 17 6 7.1859 -0.3476 -2.8388 18 7 7.7044 -0.4353 -4.0443 19 14 8.1809 -0.8868 -1.3527 20 1 7.9320 -2.3263 -1.0860 21 1 9.6261 -0.6758 -1.6215 22 1 7.7756 -0.0869 -0.1689 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5489 2.1252 1.3970 29 1 2.0699 1.5874 2.1491 30 1 1.7098 4.1079 0.4654 31 1 1.8560 4.0565 2.2384 32 1 4.0325 4.5993 1.1814 33 1 4.1045 3.0326 2.0229 34 1 5.1605 2.8895 -0.2162 35 1 3.6392 3.4263 -0.9680 36 1 3.8694 1.4222 -2.1620 37 1 4.6465 -1.8072 -1.2695 38 1 4.8324 -1.0775 0.3434 39 1 6.2716 -1.5559 -0.5888 40 1 8.6036 -0.7796 -4.1616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042579070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:55 Heat of formation + Delta-G solvation = -48.646368 kcal Electronic energy + Delta-G solvation = -16636.373154 eV Core-core repulsion = 14255.839056 eV Total energy + Delta-G solvation = -2380.534098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28261 -37.05434 -34.70275 -34.36551 -31.93195 -29.97446 -28.34564 -27.06963 -24.60693 -23.07063 -21.48843 -21.42503 -20.74238 -18.83657 -17.20054 -16.44733 -15.72405 -15.47743 -15.38189 -14.97417 -14.76388 -14.20198 -14.16629 -14.04515 -13.90229 -13.55146 -13.00351 -12.85150 -12.59458 -12.38443 -12.24541 -12.09965 -11.96909 -11.82648 -11.57984 -11.43610 -11.24059 -11.10397 -11.02525 -10.79023 -10.68235 -8.98173 -8.32714 -6.36418 1.28005 1.32173 1.42769 2.28742 3.02637 3.48329 3.76620 3.93553 4.11948 4.27161 4.31142 4.47354 4.51470 4.56916 4.62494 4.65115 4.67541 4.71800 4.84269 4.89295 4.94595 4.99284 5.04128 5.14388 5.20314 5.23222 5.28518 5.33253 5.39394 5.46279 5.48368 5.54744 5.65685 5.67815 5.76795 6.04540 6.54243 6.69116 6.87359 7.30460 8.83867 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.007854 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.835760 B = 3564.020293 C = 3938.012863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.065 4.065 4 H 0.061 0.939 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.146 4.146 9 C 0.091 3.909 10 H 0.059 0.941 11 N -0.672 5.672 12 C 0.190 3.810 13 H -0.008 1.008 14 C -0.132 4.132 15 C -0.522 4.522 16 H 0.040 0.960 17 C 0.015 3.985 18 N -0.946 5.946 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.297 1.297 22 H -0.254 1.254 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.332 0.668 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 5.544 13.748 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.186 4.186 9 C -0.019 4.019 10 H 0.077 0.923 11 N -0.301 5.301 12 C 0.080 3.920 13 H 0.010 0.990 14 C -0.189 4.189 15 C -0.560 4.560 16 H 0.058 0.942 17 C -0.183 4.183 18 N -0.587 5.587 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.225 1.225 22 H -0.178 1.178 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.448 4.879 13.798 19.214 hybrid contribution 1.604 0.363 -0.253 1.664 sum -10.845 5.241 13.545 18.126 Atomic orbital electron populations 1.21779 0.95120 1.01482 1.01875 1.21403 0.95864 0.96188 1.01463 1.21046 0.92965 0.96309 0.98104 0.92067 1.21623 1.01315 0.95393 0.96452 1.21520 0.94436 0.96870 1.02318 1.21468 0.97107 1.00183 0.96200 1.22231 0.99590 0.97491 0.99250 1.21689 0.96189 0.91900 0.92165 0.92258 1.60580 1.25483 1.39389 1.04633 1.19299 0.86608 0.92274 0.93813 0.99043 1.21973 0.98794 0.98739 0.99415 1.21428 0.99394 1.42240 0.92929 0.94209 1.25774 0.98725 0.95376 0.98435 1.70037 1.16862 1.48142 1.23622 0.85817 0.76539 0.79461 0.80341 1.19255 1.22475 1.17791 0.91615 0.93146 0.92947 0.92762 0.93145 0.90243 0.92191 0.92003 0.90461 0.91555 0.92276 0.94457 0.92187 0.85031 0.93093 0.92890 0.95304 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.67 71.98 0.70 -2.37 16 2 C -0.11 -2.97 5.32 30.59 0.16 -2.81 16 3 C -0.07 -1.70 1.90 -10.79 -0.02 -1.72 16 4 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.11 -2.24 4.96 30.59 0.15 -2.09 16 6 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 7 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 8 C -0.15 -4.42 5.16 30.59 0.16 -4.26 16 9 C 0.09 2.92 1.72 44.91 0.08 3.00 16 10 H 0.06 2.02 7.11 -2.39 -0.02 2.00 16 11 N -0.67 -27.03 5.20 -473.31 -2.46 -29.49 16 12 C 0.19 8.97 2.00 44.17 0.09 9.06 16 13 H -0.01 -0.39 6.17 -2.39 -0.01 -0.40 16 14 C -0.13 -5.76 8.88 71.98 0.64 -5.13 16 15 C -0.52 -30.03 9.17 25.60 0.23 -29.79 16 16 H 0.04 2.52 7.86 -2.91 -0.02 2.50 16 17 C 0.01 0.86 5.45 84.65 0.46 1.32 16 18 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 19 Si 0.95 45.91 24.37 68.60 1.67 47.58 16 20 H -0.27 -12.29 6.87 99.48 0.68 -11.60 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 23 H 0.06 1.16 6.57 -2.39 -0.02 1.14 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.76 7.45 -2.39 -0.02 1.75 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.37 6.57 -2.38 -0.02 1.35 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.30 7.43 -2.39 -0.02 1.28 16 35 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.33 13.94 7.96 -89.70 -0.71 13.22 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.00 7.43 -2.39 -0.02 1.98 16 39 H 0.03 1.29 3.27 -2.38 -0.01 1.28 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -62.75 295.79 2.72 -60.03 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.19 Total: 20.41 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.01 Total: -39.19 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -2.16 Total: -88.83 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -62.75 2.72 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042579070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.384 kcal (2) G-P(sol) polarization free energy of solvation -62.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds