Wall clock time and date at job start Mon Mar 30 2020 03:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 H 1.08994 * 109.47524 * 305.00029 * 3 2 1 5 5 C 1.53002 * 109.46952 * 64.99894 * 3 2 1 6 6 C 1.53008 * 109.46891 * 60.00294 * 5 3 2 7 7 C 1.53001 * 109.47337 * 59.99807 * 6 5 3 8 8 C 1.52997 * 109.46816 * 300.00107 * 7 6 5 9 9 H 1.08999 * 109.47567 * 299.99523 * 8 7 6 10 10 N 1.46907 * 109.46796 * 179.97438 * 8 7 6 11 11 C 1.46894 * 111.00071 * 306.04728 * 10 8 7 12 12 C 1.46903 * 110.99886 * 70.00000 * 10 8 7 13 13 C 1.50694 * 109.47066 * 169.99909 * 12 10 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.53000 * 109.47554 * 60.00198 * 8 7 6 22 22 H 1.09004 * 109.46925 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46992 * 299.99640 * 1 2 3 24 24 H 1.08998 * 109.47125 * 59.99985 * 1 2 3 25 25 H 1.08997 * 109.46992 * 240.00360 * 2 1 3 26 26 H 1.08998 * 109.47125 * 120.00014 * 2 1 3 27 27 H 1.08995 * 109.47340 * 299.99963 * 5 3 2 28 28 H 1.09000 * 109.47159 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.46657 * 299.99619 * 6 5 3 30 30 H 1.08996 * 109.46613 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.46946 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47047 * 59.99909 * 7 6 5 33 33 H 1.09004 * 109.46699 * 183.95425 * 11 10 8 34 34 H 1.09000 * 109.46908 * 303.94877 * 11 10 8 35 35 H 1.09001 * 109.47502 * 63.95279 * 11 10 8 36 36 H 1.09007 * 109.47052 * 49.99594 * 12 10 8 37 37 H 1.09003 * 109.46808 * 290.00287 * 12 10 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47267 * 59.99611 * 21 8 7 40 40 H 1.08997 * 109.47434 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 2.2453 1.3699 2.4890 7 6 3.7702 1.3717 2.3633 8 6 4.1748 0.6877 1.0559 9 1 3.8116 -0.3399 1.0558 10 7 5.6389 0.6901 0.9349 11 6 6.1765 2.0499 1.0750 12 6 6.2494 -0.2207 1.9126 13 6 7.7153 -0.3811 1.6025 14 1 8.1501 0.1409 0.7629 15 6 8.5015 -1.1952 2.3902 16 7 7.9721 -1.8313 3.4123 17 14 10.3185 -1.3946 2.0054 18 1 10.9357 -2.3152 2.9938 19 1 10.4766 -1.9557 0.6396 20 1 10.9879 -0.0709 2.0773 21 6 3.5648 1.4444 -0.1257 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5489 2.1252 1.3969 28 1 1.9989 3.1541 1.3076 29 1 1.8820 0.3422 2.4889 30 1 1.9573 1.8574 3.4203 31 1 4.2048 0.8331 3.2053 32 1 4.1335 2.3994 2.3633 33 1 7.2542 2.0331 0.9116 34 1 5.7077 2.7035 0.3393 35 1 5.9668 2.4221 2.0778 36 1 5.7583 -1.1925 1.8599 37 1 6.1329 0.1913 2.9150 38 1 8.5251 -2.4043 3.9661 39 1 3.9281 2.4721 -0.1257 40 1 3.8535 0.9574 -1.0571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070565095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:00 Heat of formation + Delta-G solvation = -25.381799 kcal Electronic energy + Delta-G solvation = -16546.638292 eV Core-core repulsion = 14167.113021 eV Total energy + Delta-G solvation = -2379.525271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46872 -35.96310 -32.79211 -32.03903 -29.96750 -28.52641 -27.00218 -24.92326 -23.53206 -22.04837 -21.81172 -19.70284 -17.91016 -16.38757 -15.54822 -15.01146 -14.71911 -14.18755 -13.98362 -13.62637 -13.43345 -12.94175 -12.68525 -12.18779 -12.05827 -11.86332 -11.83021 -11.45982 -11.08137 -10.89539 -10.80778 -10.73990 -10.66029 -10.52217 -10.29825 -10.04385 -9.85024 -9.77087 -9.41126 -9.12315 -8.38223 -7.07261 -5.98242 -3.99124 3.36008 3.39682 3.42961 4.45832 4.83683 4.85809 5.01572 5.24825 5.31916 5.37422 5.38767 5.48427 5.57359 5.69628 5.78375 5.86204 5.91546 5.93859 5.95707 6.09829 6.15630 6.20652 6.25899 6.31525 6.40486 6.46381 6.48439 6.55067 6.63279 6.73619 6.85511 6.89618 7.38633 7.45166 7.86338 8.17090 8.30022 8.64691 9.08736 9.64730 11.12577 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.044964 B = 0.006106 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.566112 B = 4584.768098 C = 4649.856180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.084 4.084 4 H 0.063 0.937 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.152 4.152 8 C 0.086 3.914 9 H 0.075 0.925 10 N -0.536 5.536 11 C 0.035 3.965 12 C 0.193 3.807 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.278 1.278 21 C -0.104 4.104 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.027 0.973 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.058 0.942 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 6.594 -4.467 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.103 4.103 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.191 4.191 8 C -0.024 4.024 9 H 0.093 0.907 10 N -0.259 5.259 11 C -0.114 4.114 12 C 0.068 3.932 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.725 3.275 18 H -0.214 1.214 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.142 4.142 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.712 6.284 -4.795 14.969 hybrid contribution 0.836 0.103 0.797 1.159 sum -11.876 6.386 -3.998 14.065 Atomic orbital electron populations 1.21820 0.96536 1.01131 1.01410 1.21680 0.95115 0.96826 1.02591 1.21132 0.96026 0.95946 0.97217 0.91815 1.21577 0.99586 0.98971 0.94888 1.21518 0.96061 1.00490 0.97311 1.22233 0.95217 1.01458 1.00189 1.21689 0.89599 0.98811 0.92276 0.90736 1.62320 1.02190 1.08166 1.53218 1.22243 1.00987 0.90371 0.97794 1.19707 0.94437 0.90812 0.88223 1.21164 0.93391 1.27192 1.12742 0.92018 1.24988 0.98750 0.95793 0.95118 1.69954 1.36053 1.30395 1.17590 0.86575 0.84976 0.77893 0.78034 1.21399 1.20194 1.20338 1.21607 0.93237 1.00399 0.98961 0.93180 0.92717 0.93216 0.92064 0.91116 0.92386 0.92502 0.91865 0.92883 0.91731 0.92168 0.91281 0.93661 0.96711 0.95526 0.99002 0.92956 0.92345 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.12 -1.52 4.69 -26.73 -0.13 -1.64 16 3 C -0.08 -1.04 2.66 -90.62 -0.24 -1.28 16 4 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.11 -1.35 5.21 -26.73 -0.14 -1.49 16 6 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 7 C -0.15 -2.56 4.45 -26.73 -0.12 -2.68 16 8 C 0.09 1.54 1.92 -67.71 -0.13 1.41 16 9 H 0.07 1.42 6.34 -51.93 -0.33 1.09 16 10 N -0.54 -11.78 4.70 -236.33 -1.11 -12.89 16 11 C 0.03 0.69 8.48 60.06 0.51 1.20 16 12 C 0.19 5.12 4.29 -4.98 -0.02 5.10 16 13 C -0.51 -14.48 8.51 -34.44 -0.29 -14.78 16 14 H 0.06 1.75 7.10 -52.49 -0.37 1.37 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 17 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.10 -1.57 4.66 -26.73 -0.12 -1.69 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.54 6.56 -51.93 -0.34 0.19 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.95 4.83 -51.93 -0.25 0.70 16 27 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.25 6.91 -51.93 -0.36 0.89 16 32 H 0.06 1.01 6.41 -51.93 -0.33 0.68 16 33 H 0.07 1.48 6.86 -51.93 -0.36 1.12 16 34 H 0.04 0.78 6.30 -51.93 -0.33 0.45 16 35 H 0.01 0.29 6.46 -51.93 -0.34 -0.05 16 36 H 0.03 0.76 7.93 -51.92 -0.41 0.35 16 37 H -0.01 -0.22 7.06 -51.93 -0.37 -0.59 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -29.38 291.92 -8.45 -37.83 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.88 Total: -2.60 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -0.57 Total: -17.28 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.37 Total: -39.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.38 -8.45 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070565095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.452 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds