Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 55.00329 * 3 2 1 5 5 C 1.53000 * 109.47341 * 295.00521 * 3 2 1 6 6 C 1.53008 * 109.46668 * 299.99772 * 5 3 2 7 7 C 1.53001 * 109.47079 * 299.99868 * 6 5 3 8 8 C 1.52997 * 109.46902 * 60.00475 * 7 6 5 9 9 H 1.09000 * 109.47400 * 59.99790 * 8 7 6 10 10 N 1.46904 * 109.46954 * 179.97438 * 8 7 6 11 11 C 1.46902 * 110.99983 * 176.04542 * 10 8 7 12 12 C 1.46901 * 111.00028 * 299.99911 * 10 8 7 13 13 C 1.50699 * 109.46736 * 169.99979 * 12 10 8 14 14 H 1.07991 * 120.00473 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99593 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46929 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.47005 * 209.99964 * 17 15 13 20 20 H 1.48500 * 109.47071 * 329.99930 * 17 15 13 21 21 C 1.53001 * 109.46997 * 174.99904 * 3 2 1 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.08994 * 109.47281 * 59.99487 * 5 3 2 28 28 H 1.09004 * 109.47031 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46932 * 60.00506 * 6 5 3 30 30 H 1.09003 * 109.46480 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46786 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47303 * 299.99691 * 7 6 5 33 33 H 1.08999 * 109.47145 * 60.00045 * 11 10 8 34 34 H 1.08996 * 109.47294 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.47061 * 300.00207 * 11 10 8 36 36 H 1.09004 * 109.46890 * 290.00155 * 12 10 8 37 37 H 1.08994 * 109.46860 * 49.99585 * 12 10 8 38 38 H 0.96994 * 120.00389 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.46972 * 179.97438 * 21 3 2 40 40 H 1.08993 * 109.47331 * 300.00296 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.2453 1.3700 -2.4890 7 6 3.7701 1.3718 -2.3633 8 6 4.1749 0.6877 -1.0560 9 1 3.8116 -0.3400 -1.0560 10 7 5.6390 0.6890 -0.9356 11 6 6.0618 0.1234 0.3526 12 6 6.2599 -0.0306 -2.0557 13 6 7.7494 0.1978 -2.0353 14 1 8.1905 0.8159 -1.2675 15 6 8.5490 -0.3826 -2.9972 16 7 9.8487 -0.1830 -2.9798 17 14 7.7858 -1.4513 -4.3257 18 1 7.4224 -0.6070 -5.4920 19 1 8.7621 -2.4869 -4.7494 20 1 6.5663 -2.1094 -3.7919 21 6 3.5649 1.4443 0.1257 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.5490 2.1253 -1.3968 28 1 1.9990 3.1541 -1.3074 29 1 1.8819 0.3423 -2.4890 30 1 1.9565 1.8571 -3.4203 31 1 4.2047 0.8332 -3.2054 32 1 4.1335 2.3995 -2.3633 33 1 5.7054 -0.9036 0.4330 34 1 7.1498 0.1367 0.4157 35 1 5.6437 0.7177 1.1651 36 1 6.0544 -1.0969 -1.9611 37 1 5.8488 0.3366 -2.9959 38 1 10.4111 -0.5909 -3.6566 39 1 3.9282 2.4719 0.1253 40 1 3.8532 0.9569 1.0570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070565096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -19.971164 kcal Electronic energy + Delta-G solvation = -16592.712596 eV Core-core repulsion = 14213.421948 eV Total energy + Delta-G solvation = -2379.290648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47206 -36.04992 -32.78723 -32.28896 -30.14707 -28.82365 -27.60903 -24.74951 -23.57165 -21.84820 -21.57502 -19.78080 -18.16843 -16.93028 -15.70631 -15.09792 -14.65793 -14.23845 -13.95010 -13.79277 -13.32446 -13.15542 -12.67035 -12.47941 -12.31913 -12.09090 -11.90495 -11.47249 -11.35036 -11.10665 -10.83442 -10.81990 -10.61008 -10.50207 -10.43059 -10.01948 -9.87900 -9.70855 -9.45489 -9.18457 -8.52344 -7.26115 -6.02071 -3.98325 3.29691 3.37056 3.39510 4.44549 4.66995 4.78388 4.86822 5.12380 5.20696 5.28826 5.33182 5.41690 5.56058 5.60395 5.71397 5.74023 5.80969 5.86140 5.89347 5.99805 6.09743 6.10567 6.13635 6.25264 6.31123 6.37585 6.46530 6.47768 6.54005 6.62807 6.75623 6.82585 6.96032 7.06923 7.66865 7.99688 8.15395 8.71860 9.07168 9.60345 11.11271 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.007009 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.058465 B = 3993.727033 C = 4245.237955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.085 4.085 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.114 4.114 8 C 0.084 3.916 9 H 0.030 0.970 10 N -0.529 5.529 11 C 0.035 3.965 12 C 0.158 3.842 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.872 3.128 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.108 4.108 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.008 0.992 34 H 0.078 0.922 35 H 0.050 0.950 36 H -0.015 1.015 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 1.593 4.475 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.025 4.025 9 H 0.047 0.953 10 N -0.253 5.253 11 C -0.113 4.113 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.145 4.145 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.002 0.998 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.404 2.028 4.358 18.055 hybrid contribution -0.472 -1.493 -0.771 1.746 sum -17.875 0.535 3.587 18.239 Atomic orbital electron populations 1.21816 0.96367 1.01122 1.01575 1.21689 0.95311 0.96976 1.02264 1.21139 0.95861 0.95807 0.97551 0.91638 1.21579 0.99593 0.99263 0.94620 1.21583 0.96126 1.00369 0.97654 1.21630 0.94175 1.01893 0.97480 1.21589 0.89316 0.96834 0.94737 0.95256 1.61966 1.04503 1.55609 1.03201 1.22271 1.02404 0.95473 0.91171 1.20241 0.95990 0.90899 0.89671 1.21068 0.89162 1.30492 1.13732 0.90178 1.24894 0.94713 0.96241 0.97511 1.69890 1.03779 1.45039 1.35428 0.86900 0.79426 0.80922 0.82777 1.20136 1.21222 1.19308 1.21666 0.93511 1.01337 0.98025 0.93106 0.92586 0.93239 0.92383 0.91278 0.92357 0.92058 0.92137 0.92362 0.91685 0.91208 0.97344 0.90362 0.93086 0.99757 0.95331 0.92735 0.91297 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.13 -1.43 4.69 -26.73 -0.13 -1.55 16 3 C -0.08 -1.00 2.66 -90.62 -0.24 -1.24 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -1.29 5.21 -26.73 -0.14 -1.43 16 6 C -0.12 -1.54 5.65 -26.73 -0.15 -1.69 16 7 C -0.11 -1.87 5.00 -26.73 -0.13 -2.00 16 8 C 0.08 1.46 1.67 -67.71 -0.11 1.35 16 9 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 10 N -0.53 -11.32 4.62 -236.32 -1.09 -12.41 16 11 C 0.04 0.70 8.92 60.07 0.54 1.23 16 12 C 0.16 3.93 3.60 -4.98 -0.02 3.91 16 13 C -0.51 -14.63 9.01 -34.44 -0.31 -14.94 16 14 H 0.08 2.51 7.37 -52.49 -0.39 2.13 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 17 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 21 C -0.11 -1.55 4.37 -26.73 -0.12 -1.67 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.87 4.83 -51.93 -0.25 0.62 16 27 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.17 6.20 -51.93 -0.32 0.85 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 1.72 6.76 -51.93 -0.35 1.36 16 35 H 0.05 0.86 6.24 -51.92 -0.32 0.54 16 36 H -0.02 -0.39 7.18 -51.93 -0.37 -0.76 16 37 H 0.03 0.71 5.25 -51.93 -0.27 0.43 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.87 6.35 -51.93 -0.33 0.54 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -30.11 290.48 -8.09 -38.20 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.93 Total: -2.90 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.55 Total: -17.24 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.32 Total: -39.60 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.11 -8.09 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070565096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.230 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds