Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 55.00329 * 3 2 1 5 5 C 1.53000 * 109.47341 * 295.00521 * 3 2 1 6 6 C 1.53008 * 109.46668 * 299.99772 * 5 3 2 7 7 C 1.53001 * 109.47079 * 299.99868 * 6 5 3 8 8 C 1.52997 * 109.46902 * 60.00475 * 7 6 5 9 9 H 1.09000 * 109.47400 * 59.99790 * 8 7 6 10 10 N 1.46904 * 109.46954 * 179.97438 * 8 7 6 11 11 C 1.46902 * 110.99983 * 176.04542 * 10 8 7 12 12 C 1.46901 * 111.00028 * 299.99911 * 10 8 7 13 13 C 1.50699 * 109.46736 * 169.99979 * 12 10 8 14 14 H 1.07991 * 120.00473 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99593 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46929 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.47005 * 209.99964 * 17 15 13 20 20 H 1.48500 * 109.47071 * 329.99930 * 17 15 13 21 21 C 1.53001 * 109.46997 * 174.99904 * 3 2 1 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.08994 * 109.47281 * 59.99487 * 5 3 2 28 28 H 1.09004 * 109.47031 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46932 * 60.00506 * 6 5 3 30 30 H 1.09003 * 109.46480 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46786 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47303 * 299.99691 * 7 6 5 33 33 H 1.08999 * 109.47145 * 60.00045 * 11 10 8 34 34 H 1.08996 * 109.47294 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.47061 * 300.00207 * 11 10 8 36 36 H 1.09004 * 109.46890 * 290.00155 * 12 10 8 37 37 H 1.08994 * 109.46860 * 49.99585 * 12 10 8 38 38 H 0.96994 * 120.00389 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.46972 * 179.97438 * 21 3 2 40 40 H 1.08993 * 109.47331 * 300.00296 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.2453 1.3700 -2.4890 7 6 3.7701 1.3718 -2.3633 8 6 4.1749 0.6877 -1.0560 9 1 3.8116 -0.3400 -1.0560 10 7 5.6390 0.6890 -0.9356 11 6 6.0618 0.1234 0.3526 12 6 6.2599 -0.0306 -2.0557 13 6 7.7494 0.1978 -2.0353 14 1 8.1905 0.8159 -1.2675 15 6 8.5490 -0.3826 -2.9972 16 7 9.8487 -0.1830 -2.9798 17 14 7.7858 -1.4513 -4.3257 18 1 7.4224 -0.6070 -5.4920 19 1 8.7621 -2.4869 -4.7494 20 1 6.5663 -2.1094 -3.7919 21 6 3.5649 1.4443 0.1257 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.5490 2.1253 -1.3968 28 1 1.9990 3.1541 -1.3074 29 1 1.8819 0.3423 -2.4890 30 1 1.9565 1.8571 -3.4203 31 1 4.2047 0.8332 -3.2054 32 1 4.1335 2.3995 -2.3633 33 1 5.7054 -0.9036 0.4330 34 1 7.1498 0.1367 0.4157 35 1 5.6437 0.7177 1.1651 36 1 6.0544 -1.0969 -1.9611 37 1 5.8488 0.3366 -2.9959 38 1 10.4111 -0.5909 -3.6566 39 1 3.9282 2.4719 0.1253 40 1 3.8532 0.9569 1.0570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070565096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -38.717505 kcal Electronic energy + Delta-G solvation = -16593.525498 eV Core-core repulsion = 14213.421948 eV Total energy + Delta-G solvation = -2380.103551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68246 -37.54565 -34.69771 -33.60981 -31.50630 -29.97815 -29.40779 -26.42816 -24.57115 -23.30693 -22.87304 -21.35492 -19.29654 -18.98296 -17.07414 -16.58155 -16.16933 -15.58667 -15.53483 -15.03552 -14.70931 -14.49252 -14.35665 -13.87390 -13.60750 -13.35686 -13.11974 -12.94856 -12.67382 -12.45763 -12.39589 -12.15661 -12.05501 -11.90953 -11.82462 -11.51852 -11.36047 -11.04617 -10.86260 -10.81732 -10.63560 -8.97678 -8.29792 -6.32282 1.31412 1.32718 1.43568 2.32222 3.02973 3.21504 3.78006 3.81851 4.06885 4.22303 4.31121 4.37167 4.46356 4.47444 4.57505 4.57985 4.65427 4.72992 4.80674 4.87088 4.91854 4.97578 4.99811 5.07122 5.15124 5.21076 5.21969 5.30152 5.31094 5.32894 5.42340 5.52740 5.54673 5.58135 5.68832 6.02255 6.41215 6.69693 6.74341 7.31074 8.87002 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.007009 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.058465 B = 3993.727033 C = 4245.237955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.079 4.079 4 H 0.084 0.916 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.083 3.917 9 H 0.028 0.972 10 N -0.546 5.546 11 C 0.040 3.960 12 C 0.170 3.830 13 C -0.515 4.515 14 H 0.038 0.962 15 C 0.009 3.991 16 N -0.948 5.948 17 Si 0.943 3.057 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.255 1.255 21 C -0.102 4.102 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.014 0.986 34 H 0.045 0.955 35 H 0.081 0.919 36 H -0.021 1.021 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 1.315 4.216 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.098 4.098 4 H 0.102 0.898 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.025 4.025 9 H 0.046 0.954 10 N -0.270 5.270 11 C -0.108 4.108 12 C 0.043 3.957 13 C -0.554 4.554 14 H 0.056 0.944 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.767 3.233 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.179 1.179 21 C -0.140 4.140 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.100 0.900 36 H -0.004 1.004 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.507 1.760 4.116 20.990 hybrid contribution 0.540 -1.347 -0.604 1.571 sum -19.968 0.414 3.512 20.278 Atomic orbital electron populations 1.21781 0.94626 1.01711 1.02351 1.21666 0.96820 0.96316 1.01418 1.21127 0.93533 0.96525 0.98609 0.89784 1.21580 1.00891 0.98823 0.93440 1.21546 0.93166 1.01196 0.99173 1.21628 0.96954 1.00598 0.96050 1.21727 0.86528 0.97416 0.96789 0.95443 1.61906 1.07288 1.55208 1.02636 1.22212 1.00537 0.96453 0.91591 1.19971 0.93527 0.90775 0.91397 1.21291 0.91633 1.29758 1.12700 0.94406 1.25818 0.95075 0.97758 1.00183 1.70040 1.05487 1.46555 1.36767 0.85768 0.78919 0.79084 0.79543 1.18781 1.20455 1.17924 1.21634 0.95581 1.00254 0.96546 0.92117 0.91977 0.92854 0.92720 0.92725 0.90011 0.92046 0.91708 0.91056 0.93811 0.92303 0.96772 0.93569 0.90024 1.00386 0.94892 0.92409 0.92010 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.67 71.98 0.70 -1.58 16 2 C -0.12 -2.49 4.69 30.60 0.14 -2.34 16 3 C -0.08 -1.62 2.66 -10.79 -0.03 -1.65 16 4 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.11 -2.14 5.21 30.60 0.16 -1.98 16 6 C -0.11 -2.62 5.65 30.60 0.17 -2.45 16 7 C -0.11 -3.64 5.00 30.59 0.15 -3.49 16 8 C 0.08 2.82 1.67 44.91 0.08 2.89 16 9 H 0.03 0.96 6.54 -2.39 -0.02 0.94 16 10 N -0.55 -23.55 4.62 -901.59 -4.17 -27.72 16 11 C 0.04 1.61 8.92 127.69 1.14 2.75 16 12 C 0.17 8.54 3.60 85.56 0.31 8.85 16 13 C -0.52 -30.82 9.01 25.60 0.23 -30.59 16 14 H 0.04 2.51 7.37 -2.92 -0.02 2.49 16 15 C 0.01 0.53 5.47 84.66 0.46 0.99 16 16 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 17 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 21 C -0.10 -2.77 4.37 30.60 0.13 -2.63 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.89 6.56 -2.39 -0.02 0.87 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.25 4.83 -2.39 -0.01 1.24 16 27 H 0.08 1.27 6.56 -2.39 -0.02 1.25 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.47 6.32 -2.39 -0.02 1.45 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.55 6.20 -2.39 -0.01 1.54 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 2.11 6.76 -2.39 -0.02 2.09 16 35 H 0.08 2.71 6.24 -2.38 -0.01 2.69 16 36 H -0.02 -1.09 7.18 -2.39 -0.02 -1.11 16 37 H 0.03 1.63 5.25 -2.39 -0.01 1.62 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.65 6.35 -2.39 -0.02 1.64 16 Total: -1.00 -66.33 290.48 2.60 -63.73 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.93 Total: 8.24 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.65 Total: -31.24 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -3.87 Total: -87.80 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.33 2.60 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070565096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.015 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds