Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.09005 * 109.46866 * 304.99745 * 3 2 1 5 5 C 1.52998 * 109.47059 * 64.99441 * 3 2 1 6 6 C 1.53001 * 109.47059 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47502 * 300.00196 * 6 5 3 8 8 C 1.52998 * 109.47124 * 59.99843 * 7 6 5 9 9 H 1.09005 * 109.47033 * 60.00021 * 8 7 6 10 10 N 1.46902 * 109.47449 * 180.02562 * 8 7 6 11 11 C 1.46898 * 111.00283 * 58.95014 * 10 8 7 12 12 C 1.46906 * 110.99573 * 294.99873 * 10 8 7 13 13 C 1.50706 * 109.46929 * 190.00042 * 12 10 8 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47081 * 89.99276 * 17 15 13 19 19 H 1.48499 * 109.47356 * 209.99897 * 17 15 13 20 20 H 1.48503 * 109.46728 * 329.99994 * 17 15 13 21 21 C 1.52995 * 109.47502 * 184.99637 * 3 2 1 22 22 H 1.09000 * 109.47364 * 300.00359 * 1 2 3 23 23 H 1.09004 * 109.46642 * 60.00237 * 1 2 3 24 24 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47364 * 239.99641 * 2 1 3 26 26 H 1.09000 * 109.46911 * 119.99340 * 2 1 3 27 27 H 1.08995 * 109.47582 * 299.99934 * 5 3 2 28 28 H 1.09005 * 109.47033 * 60.00407 * 5 3 2 29 29 H 1.08996 * 109.47073 * 60.00276 * 6 5 3 30 30 H 1.09009 * 109.47185 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47149 * 299.99935 * 7 6 5 32 32 H 1.08995 * 109.47576 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47334 * 296.05250 * 11 10 8 34 34 H 1.09000 * 109.46674 * 56.05127 * 11 10 8 35 35 H 1.08995 * 109.47296 * 176.04950 * 11 10 8 36 36 H 1.08998 * 109.47121 * 309.99709 * 12 10 8 37 37 H 1.09000 * 109.47141 * 69.99907 * 12 10 8 38 38 H 0.96996 * 120.00773 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47300 * 59.99524 * 21 3 2 40 40 H 1.09005 * 109.47149 * 299.99935 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6706 3.5702 1.1822 8 6 4.0754 2.8861 -0.1250 9 1 3.6412 3.4254 -0.9670 10 7 5.5395 2.8868 -0.2452 11 6 6.1611 2.1884 0.8879 12 6 6.0570 4.2563 -0.3673 13 6 7.5184 4.2103 -0.7325 14 1 8.0131 3.2590 -0.8613 15 6 8.2235 5.3828 -0.9031 16 7 9.4989 5.3428 -1.2213 17 14 7.3676 7.0283 -0.6810 18 1 7.4803 7.4575 0.7362 19 1 8.0077 8.0416 -1.5577 20 1 5.9341 6.8936 -1.0447 21 6 3.5648 1.4444 -0.1256 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.5489 2.1253 1.3968 28 1 2.0698 1.5875 2.1492 29 1 1.7116 4.1081 0.4657 30 1 1.8577 4.0561 2.2391 31 1 4.1048 3.0309 2.0241 32 1 4.0344 4.5977 1.1829 33 1 5.9444 2.7274 1.8101 34 1 5.7602 1.1770 0.9553 35 1 7.2398 2.1424 0.7388 36 1 5.5049 4.7853 -1.1441 37 1 5.9361 4.7765 0.5828 38 1 9.9951 6.1675 -1.3409 39 1 3.8533 0.9570 -1.0570 40 1 3.9995 0.9054 0.7163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070565097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = -25.277619 kcal Electronic energy + Delta-G solvation = -16396.718495 eV Core-core repulsion = 14017.197742 eV Total energy + Delta-G solvation = -2379.520753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32541 -36.13819 -33.22466 -32.29367 -30.05186 -28.53859 -27.48382 -25.00627 -23.70964 -21.85518 -21.21612 -19.74359 -18.84645 -16.84532 -15.38941 -14.89053 -14.78689 -14.27482 -14.17003 -13.49933 -13.45313 -13.42925 -13.09423 -12.42138 -12.26073 -12.06011 -11.66707 -11.45718 -11.30551 -11.08984 -10.95535 -10.80225 -10.75653 -10.62161 -10.24135 -10.19407 -9.90315 -9.83068 -9.58420 -9.22892 -8.54298 -7.23657 -6.02167 -3.98770 3.29623 3.37271 3.39802 4.44567 4.61638 4.75893 4.89817 5.12243 5.15779 5.24929 5.30749 5.35852 5.44598 5.55689 5.71471 5.74150 5.78994 5.80817 5.86196 5.96708 5.98591 6.12828 6.15296 6.16886 6.24878 6.31772 6.36925 6.45426 6.48977 6.60758 6.73590 6.77815 6.94188 7.08231 7.65969 7.98691 8.14266 8.71321 9.06947 9.60165 11.11184 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046152 B = 0.006299 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.541424 B = 4443.878012 C = 4744.564697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.154 4.154 8 C 0.083 3.917 9 H 0.072 0.928 10 N -0.525 5.525 11 C 0.032 3.968 12 C 0.162 3.838 13 C -0.507 4.507 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.105 4.105 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.014 0.986 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.026 0.974 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 -7.197 4.848 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.194 4.194 8 C -0.026 4.026 9 H 0.091 0.909 10 N -0.247 5.247 11 C -0.116 4.116 12 C 0.035 3.965 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.142 4.142 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.003 0.997 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.675 -7.331 4.361 18.730 hybrid contribution -0.488 1.512 0.875 1.814 sum -17.163 -5.819 5.236 18.864 Atomic orbital electron populations 1.21822 0.96286 1.01133 1.01763 1.21555 0.95445 0.96711 1.01898 1.21179 0.96082 0.95401 0.97899 0.91366 1.21618 0.99907 0.95852 0.97580 1.21476 0.96141 0.96513 1.01139 1.22260 0.95447 1.01549 1.00099 1.21709 0.89846 0.95285 0.95768 0.90945 1.62183 1.02113 1.19257 1.41183 1.22294 1.01177 0.96735 0.91384 1.20180 0.96779 0.84822 0.94693 1.21076 0.92204 0.94840 1.46440 0.90188 1.24892 0.94708 0.98795 0.94949 1.69890 1.07804 1.27714 1.48724 0.86879 0.80339 0.84399 0.78254 1.20399 1.21168 1.19191 1.21634 0.93564 0.96760 1.02269 0.92652 0.92891 0.93186 0.92002 0.92215 0.92308 0.92324 0.92267 0.92672 0.91906 0.91961 0.96731 0.93191 0.90634 0.95640 0.99704 0.92728 0.91403 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.12 -1.19 5.40 -26.73 -0.14 -1.34 16 3 C -0.09 -1.01 2.19 -90.62 -0.20 -1.21 16 4 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.11 -1.26 4.96 -26.73 -0.13 -1.39 16 6 C -0.11 -1.46 5.92 -26.73 -0.16 -1.61 16 7 C -0.15 -2.44 4.51 -26.73 -0.12 -2.56 16 8 C 0.08 1.43 2.22 -67.74 -0.15 1.28 16 9 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 10 N -0.53 -11.17 4.74 -236.36 -1.12 -12.29 16 11 C 0.03 0.63 8.55 60.06 0.51 1.15 16 12 C 0.16 3.99 3.23 -4.97 -0.02 3.98 16 13 C -0.51 -14.66 9.07 -34.44 -0.31 -14.97 16 14 H 0.08 2.51 7.35 -52.49 -0.39 2.13 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 17 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.08 16 21 C -0.10 -1.49 4.28 -26.76 -0.11 -1.61 16 22 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 32 H 0.06 1.10 6.75 -51.93 -0.35 0.75 16 33 H 0.01 0.27 6.51 -51.93 -0.34 -0.06 16 34 H 0.05 0.84 6.13 -51.93 -0.32 0.52 16 35 H 0.07 1.64 6.86 -51.93 -0.36 1.29 16 36 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 37 H -0.01 -0.36 6.36 -51.93 -0.33 -0.69 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -29.99 294.98 -8.32 -38.31 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.18 Total: -3.09 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.57 Total: -17.36 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.35 Total: -39.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.99 -8.32 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070565097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.037 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds