Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.09005 * 109.46866 * 304.99745 * 3 2 1 5 5 C 1.52998 * 109.47059 * 64.99441 * 3 2 1 6 6 C 1.53001 * 109.47059 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47502 * 300.00196 * 6 5 3 8 8 C 1.52998 * 109.47124 * 59.99843 * 7 6 5 9 9 H 1.09005 * 109.47033 * 60.00021 * 8 7 6 10 10 N 1.46902 * 109.47449 * 180.02562 * 8 7 6 11 11 C 1.46898 * 111.00283 * 58.95014 * 10 8 7 12 12 C 1.46906 * 110.99573 * 294.99873 * 10 8 7 13 13 C 1.50706 * 109.46929 * 190.00042 * 12 10 8 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47081 * 89.99276 * 17 15 13 19 19 H 1.48499 * 109.47356 * 209.99897 * 17 15 13 20 20 H 1.48503 * 109.46728 * 329.99994 * 17 15 13 21 21 C 1.52995 * 109.47502 * 184.99637 * 3 2 1 22 22 H 1.09000 * 109.47364 * 300.00359 * 1 2 3 23 23 H 1.09004 * 109.46642 * 60.00237 * 1 2 3 24 24 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47364 * 239.99641 * 2 1 3 26 26 H 1.09000 * 109.46911 * 119.99340 * 2 1 3 27 27 H 1.08995 * 109.47582 * 299.99934 * 5 3 2 28 28 H 1.09005 * 109.47033 * 60.00407 * 5 3 2 29 29 H 1.08996 * 109.47073 * 60.00276 * 6 5 3 30 30 H 1.09009 * 109.47185 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47149 * 299.99935 * 7 6 5 32 32 H 1.08995 * 109.47576 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47334 * 296.05250 * 11 10 8 34 34 H 1.09000 * 109.46674 * 56.05127 * 11 10 8 35 35 H 1.08995 * 109.47296 * 176.04950 * 11 10 8 36 36 H 1.08998 * 109.47121 * 309.99709 * 12 10 8 37 37 H 1.09000 * 109.47141 * 69.99907 * 12 10 8 38 38 H 0.96996 * 120.00773 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47300 * 59.99524 * 21 3 2 40 40 H 1.09005 * 109.47149 * 299.99935 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6706 3.5702 1.1822 8 6 4.0754 2.8861 -0.1250 9 1 3.6412 3.4254 -0.9670 10 7 5.5395 2.8868 -0.2452 11 6 6.1611 2.1884 0.8879 12 6 6.0570 4.2563 -0.3673 13 6 7.5184 4.2103 -0.7325 14 1 8.0131 3.2590 -0.8613 15 6 8.2235 5.3828 -0.9031 16 7 9.4989 5.3428 -1.2213 17 14 7.3676 7.0283 -0.6810 18 1 7.4803 7.4575 0.7362 19 1 8.0077 8.0416 -1.5577 20 1 5.9341 6.8936 -1.0447 21 6 3.5648 1.4444 -0.1256 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.5489 2.1253 1.3968 28 1 2.0698 1.5875 2.1492 29 1 1.7116 4.1081 0.4657 30 1 1.8577 4.0561 2.2391 31 1 4.1048 3.0309 2.0241 32 1 4.0344 4.5977 1.1829 33 1 5.9444 2.7274 1.8101 34 1 5.7602 1.1770 0.9553 35 1 7.2398 2.1424 0.7388 36 1 5.5049 4.7853 -1.1441 37 1 5.9361 4.7765 0.5828 38 1 9.9951 6.1675 -1.3409 39 1 3.8533 0.9570 -1.0570 40 1 3.9995 0.9054 0.7163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070565097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = -43.814702 kcal Electronic energy + Delta-G solvation = -16397.522323 eV Core-core repulsion = 14017.197742 eV Total energy + Delta-G solvation = -2380.324582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57618 -37.50476 -34.83298 -33.90536 -31.38895 -29.80859 -29.13908 -26.68069 -24.77792 -23.15340 -22.67833 -20.78907 -20.24357 -19.01198 -16.68188 -16.60209 -15.99060 -15.77176 -15.49651 -14.95124 -14.73843 -14.57993 -14.31734 -14.25050 -13.49933 -13.28197 -13.11037 -12.82963 -12.65410 -12.58375 -12.25342 -12.12461 -12.02925 -11.82277 -11.70728 -11.61859 -11.42500 -11.23175 -10.96787 -10.85583 -10.76488 -8.91004 -8.29634 -6.32588 1.31507 1.33599 1.44665 2.32628 3.03162 3.24846 3.73911 3.87495 4.03193 4.19827 4.23135 4.32629 4.47824 4.49770 4.60051 4.62117 4.65906 4.71109 4.79795 4.84562 4.89676 4.93149 5.03369 5.09530 5.12691 5.17751 5.23967 5.27850 5.29661 5.35313 5.40960 5.48036 5.53549 5.60291 5.66213 6.01978 6.41148 6.69607 6.74236 7.31176 8.87208 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046152 B = 0.006299 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.541424 B = 4443.878012 C = 4744.564697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.081 4.081 4 H 0.067 0.933 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.150 4.150 8 C 0.081 3.919 9 H 0.064 0.936 10 N -0.545 5.545 11 C 0.040 3.960 12 C 0.175 3.825 13 C -0.517 4.517 14 H 0.037 0.963 15 C 0.009 3.991 16 N -0.948 5.948 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.252 1.252 21 C -0.097 4.097 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.021 0.979 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.022 0.978 37 H -0.013 1.013 38 H 0.267 0.733 39 H 0.058 0.942 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -7.005 5.810 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.189 4.189 8 C -0.027 4.027 9 H 0.082 0.918 10 N -0.267 5.267 11 C -0.108 4.108 12 C 0.048 3.952 13 C -0.556 4.556 14 H 0.055 0.945 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.769 3.231 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.176 1.176 21 C -0.135 4.135 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.005 0.995 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.604 -7.162 5.329 21.541 hybrid contribution 0.471 1.349 0.548 1.530 sum -19.134 -5.813 5.877 20.843 Atomic orbital electron populations 1.21802 0.94974 1.01899 1.02092 1.21520 0.96537 0.95319 1.01963 1.21139 0.93755 0.96779 0.98351 0.91492 1.21601 1.01195 0.94536 0.97137 1.21458 0.93450 0.97917 1.01990 1.22187 0.97988 0.99848 0.98900 1.21816 0.86998 0.97524 0.96409 0.91801 1.62074 1.04910 1.17276 1.42455 1.22211 0.99236 0.98322 0.91069 1.19884 0.94029 0.87023 0.94285 1.21313 0.94490 0.93350 1.46415 0.94457 1.25825 0.95339 1.03209 0.94461 1.70042 1.09654 1.29123 1.50064 0.85742 0.79749 0.78865 0.78772 1.19217 1.20428 1.17571 1.21578 0.95710 0.94365 1.01854 0.92007 0.92859 0.92291 0.92314 0.91878 0.90177 0.92025 0.92079 0.91258 0.91965 0.94109 0.96080 0.90215 0.93900 0.96012 0.99505 0.92405 0.92372 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.43 16 2 C -0.12 -2.00 5.40 30.60 0.17 -1.84 16 3 C -0.08 -1.68 2.19 -10.80 -0.02 -1.70 16 4 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 5 C -0.11 -2.03 4.96 30.59 0.15 -1.88 16 6 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 7 C -0.15 -4.50 4.51 30.59 0.14 -4.36 16 8 C 0.08 2.71 2.22 44.90 0.10 2.81 16 9 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 10 N -0.54 -23.29 4.74 -901.70 -4.27 -27.56 16 11 C 0.04 1.56 8.55 127.69 1.09 2.65 16 12 C 0.18 8.71 3.23 85.56 0.28 8.99 16 13 C -0.52 -30.89 9.07 25.60 0.23 -30.66 16 14 H 0.04 2.48 7.35 -2.91 -0.02 2.46 16 15 C 0.01 0.53 5.47 84.65 0.46 0.99 16 16 N -0.95 -60.39 13.96 21.44 0.30 -60.09 16 17 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 21 C -0.10 -2.62 4.28 30.58 0.13 -2.49 16 22 H 0.06 0.80 6.57 -2.39 -0.02 0.78 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.24 6.56 -2.39 -0.02 1.22 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.86 6.47 -2.38 -0.02 1.84 16 32 H 0.04 1.38 6.75 -2.39 -0.02 1.37 16 33 H 0.02 0.79 6.51 -2.39 -0.02 0.77 16 34 H 0.08 2.61 6.13 -2.39 -0.01 2.60 16 35 H 0.04 1.94 6.86 -2.39 -0.02 1.92 16 36 H 0.02 1.10 7.06 -2.39 -0.02 1.08 16 37 H -0.01 -0.62 6.36 -2.39 -0.02 -0.64 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.06 1.68 6.34 -2.38 -0.02 1.67 16 Total: -1.00 -65.93 294.98 2.43 -63.50 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.92 Total: 8.36 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 3.60 Total: -31.21 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.98 Total: -87.66 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -65.93 2.43 -63.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070565097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.681 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds