Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47013 * 2 1 4 4 H 1.09005 * 108.73775 * 306.69146 * 3 2 1 5 5 C 1.50462 * 108.77218 * 65.00092 * 3 2 1 6 6 C 1.54508 * 108.84613 * 213.06723 * 5 3 2 7 7 C 1.45858 * 111.59648 * 282.80942 * 6 5 3 8 8 N 1.47806 * 112.92355 * 61.32767 * 7 6 5 9 9 C 1.46898 * 111.00207 * 153.87690 * 8 7 6 10 10 H 1.08999 * 109.47063 * 308.75463 * 9 8 7 11 11 C 1.52999 * 109.46846 * 68.75105 * 9 8 7 12 12 C 1.50696 * 109.47315 * 188.75247 * 9 8 7 13 13 H 1.07998 * 120.00009 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00021 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99948 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00059 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46980 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47242 * 119.99903 * 16 14 12 19 19 H 1.48493 * 109.47597 * 240.00503 * 16 14 12 20 20 C 1.44272 * 109.45587 * 276.74479 * 8 7 6 21 21 C 1.54072 * 111.91187 * 96.47520 * 20 8 7 22 22 H 1.09005 * 109.47640 * 60.00008 * 1 2 3 23 23 H 1.08994 * 109.47310 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47247 * 300.00604 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99869 * 2 1 3 26 26 H 1.08993 * 109.47081 * 119.99661 * 2 1 3 27 27 H 1.09001 * 109.57527 * 93.25912 * 5 3 2 28 28 H 1.08997 * 109.67680 * 332.93545 * 5 3 2 29 29 H 1.08998 * 109.05287 * 162.26679 * 6 5 3 30 30 H 1.09000 * 109.00004 * 43.31549 * 6 5 3 31 31 H 1.09000 * 108.79377 * 300.44461 * 7 6 5 32 32 H 1.08993 * 108.79586 * 182.21954 * 7 6 5 33 33 H 1.09009 * 109.46824 * 186.46490 * 11 9 8 34 34 H 1.09000 * 109.47702 * 306.46271 * 11 9 8 35 35 H 1.09001 * 109.47167 * 66.46516 * 11 9 8 36 36 H 0.97002 * 119.99374 * 180.02562 * 15 14 12 37 37 H 1.08993 * 108.98128 * 217.07586 * 20 8 7 38 38 H 1.08997 * 108.97918 * 335.87451 * 20 8 7 39 39 H 1.08995 * 108.91530 * 79.59380 * 21 20 8 40 40 H 1.08998 * 108.91341 * 198.14262 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5751 1.9783 -0.8277 5 6 1.6337 2.0997 1.2911 6 6 1.3610 3.5971 1.0248 7 6 2.6012 4.3546 0.8999 8 7 3.4428 3.8995 -0.2267 9 6 4.3059 4.9850 -0.7111 10 1 3.7015 5.8714 -0.9037 11 6 5.3619 5.3080 0.3478 12 6 4.9869 4.5549 -1.9848 13 1 4.7972 3.5736 -2.3938 14 6 5.8514 5.4147 -2.6286 15 7 6.0821 6.6100 -2.1308 16 14 6.6961 4.8814 -4.2070 17 1 6.2713 3.5013 -4.5538 18 1 6.3196 5.8057 -5.3067 19 1 8.1683 4.9132 -4.0159 20 6 4.2268 2.7617 0.1882 21 6 3.5667 1.4299 -0.2176 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5137 0.8900 27 1 2.4372 1.9990 2.0208 28 1 0.7300 1.6267 1.6753 29 1 0.7767 4.0045 1.8498 30 1 0.7897 3.6951 0.1018 31 1 3.1687 4.2542 1.8250 32 1 2.3568 5.4066 0.7530 33 1 5.9286 6.1867 0.0396 34 1 4.8718 5.5077 1.3007 35 1 6.0378 4.4599 0.4576 36 1 6.6900 7.2149 -2.5840 37 1 5.2127 2.8235 -0.2724 38 1 4.3400 2.7854 1.2720 39 1 3.7730 1.2399 -1.2708 40 1 4.0002 0.6253 0.3764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070609747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = -16.640984 kcal Electronic energy + Delta-G solvation = -16786.946412 eV Core-core repulsion = 14407.800172 eV Total energy + Delta-G solvation = -2379.146241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98680 -35.92225 -33.22334 -31.91113 -30.65111 -28.28339 -25.29829 -25.03960 -24.81410 -21.57418 -21.00539 -19.58176 -18.27446 -16.10971 -15.51706 -14.96501 -14.45129 -14.41573 -13.81263 -13.49925 -13.17355 -12.89108 -12.49210 -12.04858 -11.85859 -11.62632 -11.39858 -11.16640 -11.06796 -10.90420 -10.71766 -10.48621 -10.27660 -10.14122 -10.08726 -9.97622 -9.80881 -9.59872 -9.48996 -8.79183 -8.35904 -7.08121 -5.97838 -4.00186 3.31888 3.39817 3.44721 4.44362 4.94836 5.06246 5.16578 5.29267 5.34515 5.43459 5.64865 5.70126 5.85748 5.88423 5.94935 6.03452 6.09482 6.17647 6.18677 6.27566 6.37167 6.45344 6.46364 6.67336 6.69642 6.75566 6.79647 6.87805 6.89782 6.97463 7.01136 7.20563 7.53987 7.75846 7.92203 8.24205 8.50017 8.67223 9.07608 9.64750 11.09869 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.007815 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.607571 B = 3582.026340 C = 4086.157616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.076 4.076 4 H 0.074 0.926 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.053 3.947 8 N -0.520 5.520 9 C 0.210 3.790 10 H 0.037 0.963 11 C -0.167 4.167 12 C -0.495 4.495 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.064 3.936 21 C -0.102 4.102 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.006 0.994 35 H 0.030 0.970 36 H 0.258 0.742 37 H 0.077 0.923 38 H 0.018 0.982 39 H 0.058 0.942 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -8.896 6.019 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.095 4.095 4 H 0.093 0.907 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.075 4.075 8 N -0.243 5.243 9 C 0.104 3.896 10 H 0.055 0.945 11 C -0.226 4.226 12 C -0.534 4.534 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.065 4.065 21 C -0.141 4.141 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.799 -8.872 5.568 13.059 hybrid contribution 1.122 0.106 -0.166 1.139 sum -6.677 -8.766 5.402 12.272 Atomic orbital electron populations 1.21850 0.96483 1.00712 1.01911 1.21691 0.95371 0.97780 1.01195 1.20828 0.96182 0.94154 0.98295 0.90715 1.21448 1.00230 0.95489 0.97551 1.20595 0.97988 0.95235 1.00973 1.20905 0.94955 0.98568 0.93056 1.61847 1.24003 1.07701 1.30742 1.19417 0.88916 0.88691 0.92585 0.94487 1.22422 1.01096 1.02713 0.96418 1.21153 1.24229 1.01121 1.06917 0.91901 1.24929 0.96819 0.94963 0.97642 1.69918 1.36950 1.07179 1.39477 0.86495 0.79069 0.78725 0.83450 1.19751 1.21129 1.21242 1.21749 0.97569 0.90749 0.96461 1.21996 0.94241 0.96884 1.00930 0.92792 0.93555 0.92565 0.92478 0.92760 0.92770 0.92391 0.93066 0.91664 0.96027 0.92475 0.89919 0.97546 0.95077 0.93165 0.90514 0.96388 0.92357 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.70 37.15 0.36 -1.33 16 2 C -0.12 -1.54 5.21 -26.73 -0.14 -1.68 16 3 C -0.08 -1.14 1.81 -91.24 -0.17 -1.31 16 4 H 0.07 1.27 7.37 -51.93 -0.38 0.89 16 5 C -0.11 -1.56 4.96 -27.21 -0.14 -1.69 16 6 C -0.11 -1.69 5.53 -29.32 -0.16 -1.85 16 7 C 0.05 0.98 4.12 -6.71 -0.03 0.96 16 8 N -0.52 -11.11 4.19 -232.95 -0.97 -12.09 16 9 C 0.21 5.30 2.24 -68.87 -0.15 5.14 16 10 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 11 C -0.17 -4.07 8.26 37.16 0.31 -3.76 16 12 C -0.50 -13.58 7.57 -34.44 -0.26 -13.84 16 13 H 0.06 1.74 7.64 -52.49 -0.40 1.34 16 14 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 15 N -0.90 -25.65 11.39 55.43 0.63 -25.02 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.06 1.27 3.74 -4.67 -0.02 1.25 16 21 C -0.10 -1.72 5.49 -25.53 -0.14 -1.86 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.60 6.20 -51.93 -0.32 0.28 16 25 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.80 7.15 -51.93 -0.37 0.43 16 28 H 0.06 0.72 5.73 -51.93 -0.30 0.42 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.05 7.58 -51.93 -0.39 0.65 16 31 H 0.02 0.40 6.77 -51.93 -0.35 0.05 16 32 H 0.06 1.09 7.60 -51.93 -0.39 0.70 16 33 H 0.08 2.21 6.27 -51.92 -0.33 1.89 16 34 H 0.01 0.13 6.99 -51.93 -0.36 -0.24 16 35 H 0.03 0.74 6.74 -51.93 -0.35 0.39 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.08 1.70 5.74 -51.93 -0.30 1.41 16 38 H 0.02 0.34 6.50 -51.93 -0.34 0.01 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.68 7.98 -51.93 -0.41 0.27 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -27.56 291.58 -8.68 -36.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.08 Total: -1.53 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -0.63 Total: -18.48 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.34 Total: -37.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.56 -8.68 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.600 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds