Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47013 * 2 1 4 4 H 1.09005 * 108.73775 * 306.69146 * 3 2 1 5 5 C 1.50462 * 108.77218 * 65.00092 * 3 2 1 6 6 C 1.54508 * 108.84613 * 213.06723 * 5 3 2 7 7 C 1.45858 * 111.59648 * 282.80942 * 6 5 3 8 8 N 1.47806 * 112.92355 * 61.32767 * 7 6 5 9 9 C 1.46898 * 111.00207 * 153.87690 * 8 7 6 10 10 H 1.08999 * 109.47063 * 308.75463 * 9 8 7 11 11 C 1.52999 * 109.46846 * 68.75105 * 9 8 7 12 12 C 1.50696 * 109.47315 * 188.75247 * 9 8 7 13 13 H 1.07998 * 120.00009 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00021 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99948 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00059 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46980 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47242 * 119.99903 * 16 14 12 19 19 H 1.48493 * 109.47597 * 240.00503 * 16 14 12 20 20 C 1.44272 * 109.45587 * 276.74479 * 8 7 6 21 21 C 1.54072 * 111.91187 * 96.47520 * 20 8 7 22 22 H 1.09005 * 109.47640 * 60.00008 * 1 2 3 23 23 H 1.08994 * 109.47310 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47247 * 300.00604 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99869 * 2 1 3 26 26 H 1.08993 * 109.47081 * 119.99661 * 2 1 3 27 27 H 1.09001 * 109.57527 * 93.25912 * 5 3 2 28 28 H 1.08997 * 109.67680 * 332.93545 * 5 3 2 29 29 H 1.08998 * 109.05287 * 162.26679 * 6 5 3 30 30 H 1.09000 * 109.00004 * 43.31549 * 6 5 3 31 31 H 1.09000 * 108.79377 * 300.44461 * 7 6 5 32 32 H 1.08993 * 108.79586 * 182.21954 * 7 6 5 33 33 H 1.09009 * 109.46824 * 186.46490 * 11 9 8 34 34 H 1.09000 * 109.47702 * 306.46271 * 11 9 8 35 35 H 1.09001 * 109.47167 * 66.46516 * 11 9 8 36 36 H 0.97002 * 119.99374 * 180.02562 * 15 14 12 37 37 H 1.08993 * 108.98128 * 217.07586 * 20 8 7 38 38 H 1.08997 * 108.97918 * 335.87451 * 20 8 7 39 39 H 1.08995 * 108.91530 * 79.59380 * 21 20 8 40 40 H 1.08998 * 108.91341 * 198.14262 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5751 1.9783 -0.8277 5 6 1.6337 2.0997 1.2911 6 6 1.3610 3.5971 1.0248 7 6 2.6012 4.3546 0.8999 8 7 3.4428 3.8995 -0.2267 9 6 4.3059 4.9850 -0.7111 10 1 3.7015 5.8714 -0.9037 11 6 5.3619 5.3080 0.3478 12 6 4.9869 4.5549 -1.9848 13 1 4.7972 3.5736 -2.3938 14 6 5.8514 5.4147 -2.6286 15 7 6.0821 6.6100 -2.1308 16 14 6.6961 4.8814 -4.2070 17 1 6.2713 3.5013 -4.5538 18 1 6.3196 5.8057 -5.3067 19 1 8.1683 4.9132 -4.0159 20 6 4.2268 2.7617 0.1882 21 6 3.5667 1.4299 -0.2176 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5137 0.8900 27 1 2.4372 1.9990 2.0208 28 1 0.7300 1.6267 1.6753 29 1 0.7767 4.0045 1.8498 30 1 0.7897 3.6951 0.1018 31 1 3.1687 4.2542 1.8250 32 1 2.3568 5.4066 0.7530 33 1 5.9286 6.1867 0.0396 34 1 4.8718 5.5077 1.3007 35 1 6.0378 4.4599 0.4576 36 1 6.6900 7.2149 -2.5840 37 1 5.2127 2.8235 -0.2724 38 1 4.3400 2.7854 1.2720 39 1 3.7730 1.2399 -1.2708 40 1 4.0002 0.6253 0.3764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070609747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = -31.866086 kcal Electronic energy + Delta-G solvation = -16787.606622 eV Core-core repulsion = 14407.800172 eV Total energy + Delta-G solvation = -2379.806451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47320 -37.39925 -34.95727 -33.51386 -32.06141 -29.94862 -27.31999 -26.49824 -26.20786 -23.08315 -22.39849 -20.96590 -19.83332 -18.15792 -17.20944 -16.37677 -16.21301 -15.62367 -15.35426 -14.95400 -14.61796 -14.39426 -13.88474 -13.69262 -13.32535 -13.06880 -12.93690 -12.77523 -12.75207 -12.41482 -12.19514 -12.14508 -12.04287 -11.99671 -11.44360 -11.36747 -11.12018 -11.03511 -10.88658 -10.75810 -10.49985 -8.80251 -8.11000 -6.20436 1.39898 1.41853 1.53732 2.42636 3.18370 3.39547 3.85220 4.05323 4.16434 4.25794 4.37326 4.48260 4.56261 4.63308 4.71576 4.78647 4.81844 4.84399 4.87240 4.96277 5.01856 5.10306 5.11740 5.20496 5.24196 5.31816 5.36815 5.38656 5.53078 5.55496 5.59367 5.68343 5.71374 5.79211 5.82818 6.24832 6.61035 6.81637 6.96282 7.48798 8.95928 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.007815 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.607571 B = 3582.026340 C = 4086.157616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.073 4.073 4 H 0.050 0.950 5 C -0.104 4.104 6 C -0.108 4.108 7 C 0.055 3.945 8 N -0.527 5.527 9 C 0.214 3.786 10 H 0.003 0.997 11 C -0.151 4.151 12 C -0.509 4.509 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.067 3.933 21 C -0.098 4.098 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.027 0.973 39 H 0.041 0.959 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 -10.618 6.771 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.091 4.091 4 H 0.069 0.931 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.073 4.073 8 N -0.251 5.251 9 C 0.107 3.893 10 H 0.021 0.979 11 C -0.210 4.210 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.062 4.062 21 C -0.137 4.137 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.703 -10.607 6.329 15.110 hybrid contribution 1.387 0.661 -0.369 1.580 sum -7.316 -9.946 5.961 13.711 Atomic orbital electron populations 1.21826 0.95179 1.01793 1.01908 1.21636 0.96465 0.95735 1.01718 1.20771 0.94354 0.95969 0.98029 0.93104 1.21428 1.01417 0.94392 0.96890 1.20569 0.96252 0.96078 1.01666 1.21001 0.95882 0.98484 0.91926 1.61831 1.23620 1.07019 1.32605 1.19172 0.88906 0.88660 0.92546 0.97914 1.22203 1.00574 1.01280 0.96984 1.21365 1.24630 1.00748 1.07984 0.92834 1.25682 0.97458 0.94993 1.00669 1.70038 1.37463 1.08029 1.40720 0.85515 0.78097 0.78388 0.79687 1.19353 1.20711 1.20613 1.21734 0.96288 0.91540 0.96616 1.21955 0.95912 0.95578 1.00210 0.93558 0.91969 0.91811 0.92782 0.91440 0.92781 0.89754 0.90348 0.92561 0.95627 0.93811 0.92538 0.95700 0.95219 0.93052 0.93547 0.95454 0.94054 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.70 71.98 0.70 -2.15 16 2 C -0.12 -2.62 5.21 30.59 0.16 -2.46 16 3 C -0.07 -2.04 1.81 -11.20 -0.02 -2.06 16 4 H 0.05 1.68 7.37 -2.38 -0.02 1.66 16 5 C -0.10 -2.64 4.96 30.29 0.15 -2.49 16 6 C -0.11 -3.10 5.53 28.92 0.16 -2.94 16 7 C 0.05 1.99 4.12 83.94 0.35 2.33 16 8 N -0.53 -22.79 4.19 -890.91 -3.73 -26.52 16 9 C 0.21 11.13 2.24 44.17 0.10 11.23 16 10 H 0.00 0.17 7.82 -2.39 -0.02 0.15 16 11 C -0.15 -7.50 8.26 71.98 0.59 -6.90 16 12 C -0.51 -28.58 7.57 25.60 0.19 -28.38 16 13 H 0.05 3.04 7.64 -2.91 -0.02 3.02 16 14 C 0.01 0.57 5.30 84.65 0.45 1.02 16 15 N -0.92 -53.92 11.39 21.45 0.24 -53.67 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 C 0.07 2.65 3.74 87.16 0.33 2.97 16 21 C -0.10 -3.21 5.49 31.37 0.17 -3.04 16 22 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.11 6.20 -2.39 -0.01 1.10 16 25 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.40 7.15 -2.39 -0.02 1.39 16 28 H 0.08 1.74 5.73 -2.39 -0.01 1.73 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.73 7.58 -2.39 -0.02 1.72 16 31 H 0.03 0.91 6.77 -2.39 -0.02 0.89 16 32 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 33 H 0.06 3.10 6.27 -2.38 -0.01 3.08 16 34 H 0.02 1.09 6.99 -2.39 -0.02 1.07 16 35 H 0.03 1.43 6.74 -2.39 -0.02 1.41 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.05 2.09 5.74 -2.39 -0.01 2.08 16 38 H 0.03 1.01 6.50 -2.39 -0.02 1.00 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.90 7.98 -2.39 -0.02 1.89 16 Total: -1.00 -59.79 291.58 2.85 -56.94 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.98 Total: 9.52 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 3.33 Total: -32.89 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.48 Total: -80.19 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -59.79 2.85 -56.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.074 kcal (2) G-P(sol) polarization free energy of solvation -59.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds