Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 H 1.08996 * 109.46817 * 54.26000 * 3 2 1 5 5 C 1.52997 * 109.46758 * 294.26101 * 3 2 1 6 6 C 1.53000 * 109.46893 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46907 * 60.00187 * 6 5 3 8 8 C 1.53006 * 109.47354 * 300.00023 * 7 6 5 9 9 C 1.52998 * 109.47050 * 174.26208 * 3 2 1 10 10 H 1.08996 * 109.47481 * 60.00199 * 9 3 2 11 11 N 1.46902 * 109.47100 * 299.99859 * 9 3 2 12 12 C 1.46896 * 110.99843 * 167.28548 * 11 9 3 13 13 C 1.46903 * 110.99957 * 291.24165 * 11 9 3 14 14 C 1.50704 * 109.47070 * 170.00076 * 13 11 9 15 15 H 1.08006 * 119.99790 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99797 * 179.97438 * 14 13 11 17 17 N 1.31505 * 120.00431 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99569 * 179.72458 * 16 14 13 19 19 H 1.48504 * 109.46965 * 180.27914 * 18 16 14 20 20 H 1.48505 * 109.47328 * 300.27344 * 18 16 14 21 21 H 1.48497 * 109.47199 * 60.27689 * 18 16 14 22 22 H 1.09005 * 109.46537 * 299.99725 * 1 2 3 23 23 H 1.08996 * 109.46977 * 59.99635 * 1 2 3 24 24 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46988 * 239.99991 * 2 1 3 26 26 H 1.09004 * 109.47259 * 120.00338 * 2 1 3 27 27 H 1.08996 * 109.47824 * 299.99846 * 5 3 2 28 28 H 1.09005 * 109.47611 * 60.00285 * 5 3 2 29 29 H 1.09001 * 109.47164 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47557 * 300.00201 * 6 5 3 31 31 H 1.09003 * 109.47001 * 59.99673 * 7 6 5 32 32 H 1.08998 * 109.47619 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.46973 * 300.00139 * 8 7 6 34 34 H 1.08997 * 109.47398 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47038 * 189.34639 * 12 11 9 36 36 H 1.09002 * 109.47256 * 309.34323 * 12 11 9 37 37 H 1.09005 * 109.47319 * 69.34605 * 12 11 9 38 38 H 1.08999 * 109.46976 * 49.99831 * 13 11 9 39 39 H 1.09004 * 109.46728 * 289.99849 * 13 11 9 40 40 H 0.97007 * 120.00034 * 359.72050 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 0.8341 5 6 1.6513 2.1208 -1.3151 6 6 2.1607 3.5635 -1.3149 7 6 3.6839 3.5664 -1.1704 8 6 4.0728 2.8880 0.1447 9 6 3.5633 1.4449 0.1442 10 1 4.0081 0.9023 -0.6899 11 7 3.9366 0.7935 1.4069 12 6 5.3765 0.5057 1.4451 13 6 3.5319 1.6091 2.5598 14 6 3.7043 0.8099 3.8258 15 1 4.0768 -0.2028 3.7786 16 6 3.3864 1.3716 5.0441 17 7 2.9324 2.6044 5.1015 18 14 3.5928 0.3783 6.6127 19 1 3.1792 1.2011 7.7777 20 1 2.7469 -0.8402 6.5420 21 1 5.0164 -0.0157 6.7654 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0960 1.5783 -2.1493 28 1 0.5661 2.1192 -1.4179 29 1 1.8842 4.0467 -2.2520 30 1 1.7156 4.1060 -0.4807 31 1 4.1290 3.0239 -2.0045 32 1 4.0470 4.5941 -1.1707 33 1 3.6277 3.4303 0.9788 34 1 5.1579 2.8904 0.2479 35 1 5.5991 -0.1203 2.3093 36 1 5.6670 -0.0167 0.5336 37 1 5.9321 1.4405 1.5209 38 1 2.4863 1.8975 2.4516 39 1 4.1526 2.5039 2.6075 40 1 2.8249 3.1201 4.2870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082657756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -48.786179 kcal Electronic energy + Delta-G solvation = -16870.516854 eV Core-core repulsion = 14489.976693 eV Total energy + Delta-G solvation = -2380.540161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73201 -37.06737 -34.85640 -34.71252 -30.65361 -29.80125 -28.88685 -26.15159 -24.74392 -24.33525 -21.83358 -21.56250 -20.42523 -18.70716 -17.07660 -16.08979 -15.71550 -15.66038 -15.48331 -15.37636 -14.79845 -14.41763 -14.14022 -13.85717 -13.75847 -13.33089 -13.22169 -12.83044 -12.60051 -12.50466 -12.33644 -12.22219 -11.99320 -11.93338 -11.87874 -11.61207 -11.22000 -11.09000 -10.91404 -10.66114 -10.53897 -8.94732 -8.66186 -6.36215 1.50833 1.59707 1.78956 2.55299 3.15002 3.27496 3.65197 3.82802 4.01787 4.15490 4.20808 4.37659 4.43433 4.46637 4.48979 4.55092 4.59014 4.64299 4.79162 4.82860 4.89516 4.93989 4.97651 5.02382 5.11011 5.13185 5.19282 5.22307 5.24053 5.32663 5.38204 5.43242 5.61161 5.66970 5.85057 6.04104 6.45152 6.46814 6.71570 7.44020 8.71453 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.008314 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.210070 B = 3367.035168 C = 3659.721681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.074 4.074 4 H 0.031 0.969 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.148 4.148 9 C 0.088 3.912 10 H 0.088 0.912 11 N -0.535 5.535 12 C 0.043 3.957 13 C 0.204 3.796 14 C -0.598 4.598 15 H 0.052 0.948 16 C -0.039 4.039 17 N -0.939 5.939 18 Si 1.119 2.881 19 H -0.284 1.284 20 H -0.271 1.271 21 H -0.269 1.269 22 H 0.030 0.970 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.006 0.994 38 H -0.002 1.002 39 H -0.045 1.045 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -2.077 -14.536 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.093 4.093 4 H 0.049 0.951 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.144 4.144 8 C -0.187 4.187 9 C -0.020 4.020 10 H 0.106 0.894 11 N -0.257 5.257 12 C -0.105 4.105 13 C 0.078 3.922 14 C -0.637 4.637 15 H 0.070 0.930 16 C -0.236 4.236 17 N -0.577 5.577 18 Si 0.940 3.060 19 H -0.209 1.209 20 H -0.196 1.196 21 H -0.195 1.195 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.024 0.976 38 H 0.016 0.984 39 H -0.028 1.028 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.215 -2.489 -12.873 13.168 hybrid contribution 0.683 1.137 -1.117 1.734 sum -0.532 -1.352 -13.990 14.066 Atomic orbital electron populations 1.21780 0.95592 1.01695 1.01275 1.21365 0.95710 0.95692 1.01687 1.21122 0.93806 0.96742 0.97617 0.95092 1.21593 1.01282 0.95266 0.96141 1.21556 0.95200 0.97054 1.01833 1.21445 0.96590 1.00282 0.96059 1.22168 0.99753 0.98104 0.98677 1.21864 0.96152 0.92053 0.91976 0.89358 1.62141 1.15712 1.45899 1.01977 1.22165 0.87768 0.98809 1.01797 1.19418 0.92949 0.90541 0.89308 1.22367 1.46804 1.01389 0.93094 0.93007 1.27371 0.93131 0.97339 1.05793 1.70927 1.45138 1.10510 1.31075 0.82919 0.77620 0.74057 0.71440 1.20898 1.19591 1.19454 0.95048 0.91048 0.92141 0.91067 0.93637 0.90235 0.90793 0.89553 0.94121 0.90240 0.91836 0.95205 0.93258 0.92931 0.90181 0.97574 0.98371 1.02778 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.68 71.98 0.70 -3.34 16 2 C -0.11 -3.40 5.32 30.60 0.16 -3.23 16 3 C -0.07 -2.46 1.57 -10.79 -0.02 -2.48 16 4 H 0.03 1.28 6.46 -2.39 -0.02 1.26 16 5 C -0.11 -2.59 4.97 30.59 0.15 -2.44 16 6 C -0.12 -2.89 5.92 30.59 0.18 -2.71 16 7 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 8 C -0.15 -5.14 4.42 30.61 0.14 -5.00 16 9 C 0.09 3.11 1.62 44.93 0.07 3.19 16 10 H 0.09 2.74 7.88 -2.39 -0.02 2.72 16 11 N -0.54 -23.49 3.82 -901.51 -3.44 -26.93 16 12 C 0.04 1.71 8.98 127.69 1.15 2.86 16 13 C 0.20 11.07 2.89 85.56 0.25 11.31 16 14 C -0.60 -35.22 8.58 25.60 0.22 -35.00 16 15 H 0.05 3.02 7.10 -2.91 -0.02 3.00 16 16 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16 17 N -0.94 -59.72 13.65 21.44 0.29 -59.42 16 18 Si 1.12 51.87 29.90 68.60 2.05 53.93 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.07 1.62 6.59 -2.39 -0.02 1.60 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.04 1.79 7.43 -2.38 -0.02 1.77 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.66 6.59 -2.38 -0.02 1.64 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.25 6.54 -2.39 -0.02 1.23 16 34 H 0.05 1.73 7.00 -2.39 -0.02 1.72 16 35 H 0.05 2.25 7.02 -2.39 -0.02 2.23 16 36 H 0.08 2.57 7.91 -2.39 -0.02 2.55 16 37 H 0.01 0.24 7.06 -2.38 -0.02 0.22 16 38 H 0.00 -0.10 6.09 -2.39 -0.01 -0.11 16 39 H -0.05 -2.65 6.64 -2.38 -0.02 -2.67 16 40 H 0.25 16.29 7.22 -92.70 -0.67 15.62 16 Total: -1.00 -66.86 296.72 3.62 -63.24 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.08 Total: 10.44 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 3.64 Total: -41.25 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.15 Total: -86.35 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.93 kcal Total: -66.86 3.62 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082657756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds