Wall clock time and date at job start Mon Mar 30 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.09001 * 109.46921 * 304.99877 * 3 2 1 5 5 C 1.53002 * 109.47087 * 65.00367 * 3 2 1 6 6 C 1.52991 * 109.47052 * 59.99944 * 5 3 2 7 7 C 1.52997 * 109.47530 * 60.00343 * 6 5 3 8 8 C 1.53002 * 109.46673 * 299.99889 * 7 6 5 9 9 C 1.53002 * 109.47266 * 60.00119 * 8 7 6 10 10 H 1.08998 * 109.47339 * 59.99902 * 9 8 7 11 11 N 1.46902 * 109.46789 * 179.97438 * 9 8 7 12 12 C 1.46906 * 110.99573 * 176.04292 * 11 9 8 13 13 C 1.46898 * 111.00283 * 299.99433 * 11 9 8 14 14 C 1.50697 * 109.47095 * 169.99991 * 13 11 9 15 15 H 1.07998 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99832 * 179.97438 * 14 13 11 17 17 N 1.31520 * 120.00052 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00153 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47096 * 89.99696 * 18 16 14 20 20 H 1.48501 * 109.47020 * 209.99773 * 18 16 14 21 21 H 1.48498 * 109.46962 * 329.99878 * 18 16 14 22 22 H 1.08997 * 109.46779 * 299.99829 * 1 2 3 23 23 H 1.09000 * 109.47309 * 59.99692 * 1 2 3 24 24 H 1.08998 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47169 * 240.00365 * 2 1 3 26 26 H 1.09000 * 109.47309 * 120.00308 * 2 1 3 27 27 H 1.09000 * 109.46775 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.46858 * 300.00138 * 5 3 2 29 29 H 1.09004 * 109.46969 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.47709 * 299.99892 * 6 5 3 31 31 H 1.08998 * 109.47256 * 59.99572 * 7 6 5 32 32 H 1.09001 * 109.47738 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47400 * 299.99529 * 8 7 6 34 34 H 1.09005 * 109.46858 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46544 * 183.95424 * 12 11 9 36 36 H 1.09001 * 109.47272 * 303.95030 * 12 11 9 37 37 H 1.09000 * 109.47033 * 63.95479 * 12 11 9 38 38 H 1.08992 * 109.47062 * 290.00772 * 13 11 9 39 39 H 1.09003 * 109.46753 * 50.00460 * 13 11 9 40 40 H 0.97000 * 119.99982 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 2.2454 1.3699 2.4889 7 6 3.7702 1.3717 2.3632 8 6 4.1749 0.6876 1.0558 9 6 3.5649 1.4443 -0.1258 10 1 3.9282 2.4720 -0.1258 11 7 3.9540 0.7879 -1.3810 12 6 3.3096 1.4318 -2.5336 13 6 5.4147 0.7715 -1.5359 14 6 5.7869 -0.1150 -2.6962 15 1 5.0155 -0.6159 -3.2623 16 6 7.1122 -0.2859 -3.0358 17 7 7.4371 -1.0592 -4.0487 18 14 8.4465 0.5810 -2.0570 19 1 8.8798 -0.2878 -0.9334 20 1 9.6060 0.8615 -2.9414 21 1 7.9143 1.8584 -1.5183 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.9984 3.1543 1.3072 28 1 0.5490 2.1252 1.3970 29 1 1.9568 1.8569 3.4204 30 1 1.8821 0.3422 2.4890 31 1 4.1336 2.3993 2.3632 32 1 4.2049 0.8322 3.2047 33 1 3.8116 -0.3400 1.0558 34 1 5.2612 0.6893 0.9660 35 1 3.5587 0.8835 -3.4421 36 1 2.2287 1.4303 -2.3932 37 1 3.6634 2.4591 -2.6205 38 1 5.7715 1.7842 -1.7231 39 1 5.8724 0.3878 -0.6240 40 1 8.3696 -1.1797 -4.2874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082657757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:46 Heat of formation + Delta-G solvation = -17.422801 kcal Electronic energy + Delta-G solvation = -16804.657739 eV Core-core repulsion = 14425.477596 eV Total energy + Delta-G solvation = -2379.180143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54155 -35.58420 -33.10239 -32.37621 -29.67633 -29.01689 -27.51276 -24.83380 -23.21018 -22.03861 -21.39357 -19.85798 -17.91867 -16.92313 -15.78620 -14.96610 -14.58821 -14.23831 -14.10073 -13.53415 -13.18818 -12.99649 -12.80614 -12.48094 -12.29334 -12.00100 -11.76527 -11.31460 -11.21690 -11.00396 -10.93300 -10.75215 -10.60263 -10.46823 -10.30515 -10.02515 -9.81276 -9.61418 -9.38556 -9.18325 -8.52118 -7.25510 -6.01986 -3.98179 3.29729 3.37157 3.39691 4.44649 4.70593 4.89506 4.94572 5.20756 5.31219 5.36572 5.42909 5.52411 5.58143 5.70849 5.77828 5.81349 5.85344 5.93701 5.98669 6.08525 6.15021 6.21783 6.28276 6.31250 6.36303 6.38971 6.42880 6.61129 6.65035 6.79669 6.80514 6.90526 6.96087 7.07859 7.66922 7.99695 8.15287 8.71826 9.07276 9.60542 11.11316 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.008012 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.432317 B = 3493.965344 C = 3972.137156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.080 4.080 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.088 3.912 10 H 0.025 0.975 11 N -0.524 5.524 12 C 0.035 3.965 13 C 0.158 3.842 14 C -0.505 4.505 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.008 0.992 38 H -0.016 1.016 39 H 0.029 0.971 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 5.712 11.432 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.021 4.021 10 H 0.043 0.957 11 N -0.248 5.248 12 C -0.114 4.114 13 C 0.032 3.968 14 C -0.543 4.543 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.700 3.300 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.002 0.998 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.057 5.156 11.335 16.653 hybrid contribution 1.212 1.322 0.358 1.829 sum -9.845 6.478 11.693 16.602 Atomic orbital electron populations 1.21843 0.97175 1.00888 1.00995 1.21564 0.93999 0.96343 1.03421 1.21201 0.95089 0.96824 0.96742 0.91486 1.21583 0.99864 0.98823 0.94914 1.21560 0.95770 1.00870 0.97431 1.21531 0.95665 1.00553 0.97779 1.21664 1.00708 1.00197 0.92770 1.21561 0.94060 0.95122 0.91324 0.95705 1.61962 1.10614 1.52165 1.00021 1.22284 0.97438 0.96187 0.95474 1.20246 0.83493 0.95301 0.97762 1.21061 0.93184 1.27244 1.12860 0.90176 1.24895 0.98404 0.95067 0.95019 1.69898 1.17845 1.38475 1.27944 0.86900 0.82004 0.80716 0.80403 1.20156 1.21249 1.19328 0.93292 0.93290 0.93326 0.90090 0.91901 0.92664 0.92080 0.92842 0.91567 0.92595 0.92330 0.90814 0.91729 0.90503 0.92977 0.97320 0.99787 0.95340 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.12 -1.63 4.61 -26.73 -0.12 -1.75 16 3 C -0.08 -1.14 1.70 -90.62 -0.15 -1.29 16 4 H 0.07 0.97 6.26 -51.93 -0.33 0.65 16 5 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 6 C -0.12 -1.37 5.65 -26.74 -0.15 -1.52 16 7 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 8 C -0.12 -1.89 4.73 -26.73 -0.13 -2.01 16 9 C 0.09 1.53 1.64 -67.71 -0.11 1.42 16 10 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 11 N -0.52 -10.95 3.77 -236.33 -0.89 -11.84 16 12 C 0.03 0.67 8.99 60.07 0.54 1.21 16 13 C 0.16 3.89 3.60 -4.98 -0.02 3.87 16 14 C -0.51 -14.48 9.07 -34.44 -0.31 -14.80 16 15 H 0.08 2.49 7.35 -52.49 -0.39 2.11 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 18 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 22 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 26 H 0.06 0.88 4.83 -51.93 -0.25 0.63 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.66 6.57 -51.93 -0.34 0.31 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.23 6.54 -51.93 -0.34 0.89 16 34 H 0.06 1.16 6.20 -51.93 -0.32 0.84 16 35 H 0.08 1.66 6.86 -51.93 -0.36 1.30 16 36 H 0.05 0.87 6.01 -51.93 -0.31 0.56 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H -0.02 -0.39 7.18 -51.93 -0.37 -0.77 16 39 H 0.03 0.70 5.26 -51.93 -0.27 0.43 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -29.74 289.03 -7.81 -37.54 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.88 Total: -2.46 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.49 Total: -17.60 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.12 Total: -38.97 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.74 -7.81 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082657757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.119 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds