Wall clock time and date at job start Mon Mar 30 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.09001 * 109.46921 * 304.99877 * 3 2 1 5 5 C 1.53002 * 109.47087 * 65.00367 * 3 2 1 6 6 C 1.52991 * 109.47052 * 59.99944 * 5 3 2 7 7 C 1.52997 * 109.47530 * 60.00343 * 6 5 3 8 8 C 1.53002 * 109.46673 * 299.99889 * 7 6 5 9 9 C 1.53002 * 109.47266 * 60.00119 * 8 7 6 10 10 H 1.08998 * 109.47339 * 59.99902 * 9 8 7 11 11 N 1.46902 * 109.46789 * 179.97438 * 9 8 7 12 12 C 1.46906 * 110.99573 * 176.04292 * 11 9 8 13 13 C 1.46898 * 111.00283 * 299.99433 * 11 9 8 14 14 C 1.50697 * 109.47095 * 169.99991 * 13 11 9 15 15 H 1.07998 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99832 * 179.97438 * 14 13 11 17 17 N 1.31520 * 120.00052 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00153 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47096 * 89.99696 * 18 16 14 20 20 H 1.48501 * 109.47020 * 209.99773 * 18 16 14 21 21 H 1.48498 * 109.46962 * 329.99878 * 18 16 14 22 22 H 1.08997 * 109.46779 * 299.99829 * 1 2 3 23 23 H 1.09000 * 109.47309 * 59.99692 * 1 2 3 24 24 H 1.08998 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47169 * 240.00365 * 2 1 3 26 26 H 1.09000 * 109.47309 * 120.00308 * 2 1 3 27 27 H 1.09000 * 109.46775 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.46858 * 300.00138 * 5 3 2 29 29 H 1.09004 * 109.46969 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.47709 * 299.99892 * 6 5 3 31 31 H 1.08998 * 109.47256 * 59.99572 * 7 6 5 32 32 H 1.09001 * 109.47738 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47400 * 299.99529 * 8 7 6 34 34 H 1.09005 * 109.46858 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46544 * 183.95424 * 12 11 9 36 36 H 1.09001 * 109.47272 * 303.95030 * 12 11 9 37 37 H 1.09000 * 109.47033 * 63.95479 * 12 11 9 38 38 H 1.08992 * 109.47062 * 290.00772 * 13 11 9 39 39 H 1.09003 * 109.46753 * 50.00460 * 13 11 9 40 40 H 0.97000 * 119.99982 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 2.2454 1.3699 2.4889 7 6 3.7702 1.3717 2.3632 8 6 4.1749 0.6876 1.0558 9 6 3.5649 1.4443 -0.1258 10 1 3.9282 2.4720 -0.1258 11 7 3.9540 0.7879 -1.3810 12 6 3.3096 1.4318 -2.5336 13 6 5.4147 0.7715 -1.5359 14 6 5.7869 -0.1150 -2.6962 15 1 5.0155 -0.6159 -3.2623 16 6 7.1122 -0.2859 -3.0358 17 7 7.4371 -1.0592 -4.0487 18 14 8.4465 0.5810 -2.0570 19 1 8.8798 -0.2878 -0.9334 20 1 9.6060 0.8615 -2.9414 21 1 7.9143 1.8584 -1.5183 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.9984 3.1543 1.3072 28 1 0.5490 2.1252 1.3970 29 1 1.9568 1.8569 3.4204 30 1 1.8821 0.3422 2.4890 31 1 4.1336 2.3993 2.3632 32 1 4.2049 0.8322 3.2047 33 1 3.8116 -0.3400 1.0558 34 1 5.2612 0.6893 0.9660 35 1 3.5587 0.8835 -3.4421 36 1 2.2287 1.4303 -2.3932 37 1 3.6634 2.4591 -2.6205 38 1 5.7715 1.7842 -1.7231 39 1 5.8724 0.3878 -0.6240 40 1 8.3696 -1.1797 -4.2874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082657757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:46 Heat of formation + Delta-G solvation = -35.362397 kcal Electronic energy + Delta-G solvation = -16805.435658 eV Core-core repulsion = 14425.477596 eV Total energy + Delta-G solvation = -2379.958062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80391 -37.14774 -34.58262 -34.15367 -30.94755 -30.47344 -29.13298 -26.49989 -24.29764 -23.67473 -22.55642 -21.43876 -19.20800 -18.90862 -17.14720 -16.62962 -15.99382 -15.71759 -15.62582 -14.99075 -14.58533 -14.39175 -14.21375 -14.04140 -13.53505 -13.32472 -13.26888 -12.85101 -12.53432 -12.44818 -12.31915 -12.11829 -12.01424 -11.94493 -11.85139 -11.50362 -11.33203 -11.07086 -10.82089 -10.74028 -10.59104 -8.95454 -8.29518 -6.31749 1.31208 1.32479 1.43288 2.32195 3.03318 3.23019 3.77005 3.84948 4.09773 4.28921 4.37293 4.40109 4.45872 4.51195 4.58977 4.61765 4.68137 4.77253 4.81510 4.84835 4.94803 4.96199 5.04448 5.12526 5.19533 5.19955 5.27043 5.28806 5.35801 5.36278 5.50320 5.53134 5.56002 5.64912 5.80216 6.02997 6.42239 6.70512 6.74961 7.31613 8.87222 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.008012 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.432317 B = 3493.965344 C = 3972.137156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.075 4.075 4 H 0.065 0.935 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.116 4.116 9 C 0.086 3.914 10 H 0.019 0.981 11 N -0.536 5.536 12 C 0.041 3.959 13 C 0.170 3.830 14 C -0.513 4.513 15 H 0.038 0.962 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.943 3.057 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.256 1.256 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.011 0.989 38 H -0.023 1.023 39 H 0.033 0.967 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 7.220 14.071 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.153 4.153 9 C -0.022 4.022 10 H 0.037 0.963 11 N -0.260 5.260 12 C -0.107 4.107 13 C 0.043 3.957 14 C -0.552 4.552 15 H 0.056 0.944 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.767 3.233 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.180 1.180 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.029 0.971 38 H -0.005 1.005 39 H 0.051 0.949 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.032 6.669 13.985 19.617 hybrid contribution 1.436 0.795 -0.524 1.723 sum -10.596 7.464 13.461 18.687 Atomic orbital electron populations 1.21787 0.94943 1.01569 1.01979 1.21491 0.95909 0.95835 1.01792 1.21183 0.92441 0.97248 0.98511 0.91624 1.21571 1.01202 0.98635 0.93270 1.21560 0.94244 1.01207 0.98304 1.21506 0.97155 1.00389 0.95946 1.21655 0.99157 1.00122 0.94399 1.21728 0.96524 0.94387 0.89605 0.96278 1.61887 1.08360 1.53713 1.02050 1.22210 0.99163 0.95442 0.93923 1.19975 0.86136 0.93614 0.95946 1.21285 0.92563 1.27490 1.13817 0.94365 1.25815 1.01115 0.95843 0.96114 1.70049 1.18688 1.40281 1.29874 0.85770 0.78543 0.79960 0.79036 1.18808 1.20522 1.18007 0.91363 0.93168 0.92910 0.93512 0.91831 0.92260 0.89979 0.90404 0.91480 0.92251 0.91021 0.91698 0.93975 0.93656 0.89962 0.97089 1.00544 0.94923 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.67 71.98 0.70 -2.32 16 2 C -0.11 -3.01 4.61 30.59 0.14 -2.87 16 3 C -0.08 -1.99 1.70 -10.79 -0.02 -2.01 16 4 H 0.07 1.75 6.26 -2.39 -0.01 1.74 16 5 C -0.11 -2.20 5.21 30.59 0.16 -2.04 16 6 C -0.12 -2.22 5.65 30.59 0.17 -2.05 16 7 C -0.11 -2.60 5.92 30.59 0.18 -2.41 16 8 C -0.12 -3.65 4.73 30.60 0.14 -3.50 16 9 C 0.09 2.89 1.64 44.92 0.07 2.96 16 10 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 11 N -0.54 -22.77 3.77 -901.60 -3.40 -26.17 16 12 C 0.04 1.62 8.99 127.69 1.15 2.77 16 13 C 0.17 8.50 3.60 85.56 0.31 8.81 16 14 C -0.51 -30.57 9.07 25.60 0.23 -30.34 16 15 H 0.04 2.53 7.35 -2.91 -0.02 2.51 16 16 C 0.01 0.49 5.47 84.65 0.46 0.95 16 17 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 18 Si 0.94 45.29 27.47 68.60 1.88 47.17 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 22 H 0.07 1.16 6.56 -2.39 -0.02 1.15 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.56 7.45 -2.39 -0.02 1.55 16 26 H 0.06 1.68 4.83 -2.39 -0.01 1.67 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.37 6.57 -2.38 -0.02 1.35 16 29 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.30 6.32 -2.39 -0.02 1.29 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 2.13 6.54 -2.39 -0.02 2.12 16 34 H 0.04 1.49 6.20 -2.38 -0.01 1.48 16 35 H 0.04 2.06 6.86 -2.39 -0.02 2.04 16 36 H 0.08 2.73 6.01 -2.39 -0.01 2.71 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H -0.02 -1.17 7.18 -2.39 -0.02 -1.19 16 39 H 0.03 1.61 5.26 -2.39 -0.01 1.60 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -66.07 289.03 3.42 -62.65 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.52 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.70 Total: -32.05 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.10 Total: -86.28 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -66.07 3.42 -62.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082657757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.285 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds