Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 H 1.09006 * 109.46720 * 55.00483 * 3 2 1 5 5 C 1.52993 * 109.47502 * 295.00159 * 3 2 1 6 6 C 1.52998 * 109.47502 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47039 * 59.99809 * 6 5 3 8 8 C 1.53003 * 109.47147 * 300.00385 * 7 6 5 9 9 C 1.52996 * 109.47101 * 59.99877 * 8 7 6 10 10 H 1.09002 * 109.47578 * 60.00013 * 9 8 7 11 11 N 1.46500 * 109.46972 * 180.02562 * 9 8 7 12 12 C 1.36946 * 119.99967 * 60.00283 * 11 9 8 13 13 H 1.07996 * 119.99951 * 35.52479 * 12 11 9 14 14 C 1.38807 * 119.99504 * 215.52827 * 12 11 9 15 15 N 1.31621 * 120.00657 * 20.75708 * 14 12 11 16 16 Si 1.86807 * 119.99834 * 200.75427 * 14 12 11 17 17 H 1.48501 * 109.47014 * 270.00594 * 16 14 12 18 18 H 1.48504 * 109.46891 * 29.99967 * 16 14 12 19 19 H 1.48492 * 109.47445 * 149.99988 * 16 14 12 20 20 C 1.46496 * 120.00251 * 239.99846 * 11 9 8 21 21 C 1.53001 * 109.47213 * 272.73193 * 20 11 9 22 22 H 1.09005 * 109.46970 * 300.00326 * 1 2 3 23 23 H 1.09004 * 109.46735 * 59.99526 * 1 2 3 24 24 H 1.08992 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46848 * 239.99887 * 2 1 3 26 26 H 1.09004 * 109.46735 * 120.00474 * 2 1 3 27 27 H 1.09002 * 109.46913 * 299.99861 * 5 3 2 28 28 H 1.08998 * 109.47184 * 59.99854 * 5 3 2 29 29 H 1.08994 * 109.47808 * 179.97438 * 6 5 3 30 30 H 1.09002 * 109.47395 * 300.00097 * 6 5 3 31 31 H 1.09002 * 109.47226 * 60.00231 * 7 6 5 32 32 H 1.08992 * 109.47292 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46932 * 300.00026 * 8 7 6 34 34 H 1.08998 * 109.47202 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47027 * 32.72915 * 20 11 9 37 37 H 1.09004 * 109.47479 * 152.72944 * 20 11 9 38 38 H 1.08998 * 109.47203 * 299.99527 * 21 20 11 39 39 H 1.08996 * 109.47461 * 60.00027 * 21 20 11 40 40 H 1.09003 * 109.46889 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3072 6 6 2.1459 3.5689 -1.3075 7 6 3.6708 3.5701 -1.1821 8 6 4.0755 2.8859 0.1252 9 6 3.5649 1.4437 0.1254 10 1 3.9991 0.9043 -0.7164 11 7 3.9520 0.7888 1.3775 12 6 3.5205 1.2927 2.5756 13 1 2.5370 1.7319 2.6539 14 6 4.3474 1.2388 3.6892 15 7 5.6472 1.0976 3.5377 16 14 3.6154 1.3668 5.4031 17 1 3.5677 2.7925 5.8157 18 1 2.2399 0.8071 5.3969 19 1 4.4564 0.6026 6.3589 20 6 4.8004 -0.4051 1.3479 21 6 3.9240 -1.6500 1.1964 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0699 1.5876 -2.1491 28 1 0.5490 2.1253 -1.3968 29 1 1.8580 4.0561 -2.2390 30 1 1.7117 4.1082 -0.4657 31 1 4.1050 3.0308 -2.0239 32 1 4.0345 4.5975 -1.1818 33 1 3.6413 3.4252 0.9671 34 1 5.1618 2.8872 0.2148 35 1 6.2249 1.0596 4.3159 36 1 5.4889 -0.3407 0.5052 37 1 5.3677 -0.4708 2.2764 38 1 3.2356 -1.7144 2.0390 39 1 3.3568 -1.5843 0.2680 40 1 4.5554 -2.5383 1.1748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082657764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = -13.359261 kcal Electronic energy + Delta-G solvation = -17200.339329 eV Core-core repulsion = 14821.335395 eV Total energy + Delta-G solvation = -2379.003935 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.61781 -34.98448 -33.29422 -31.33523 -30.09915 -28.60408 -27.15924 -24.16984 -23.10598 -21.75087 -20.07449 -19.82738 -19.13795 -16.15467 -15.17772 -14.44521 -14.19096 -13.73974 -13.67965 -13.44729 -12.99268 -12.72697 -12.41668 -12.21804 -11.88858 -11.41186 -11.26094 -11.09606 -10.89901 -10.81128 -10.63131 -10.46228 -10.32792 -10.14727 -10.02566 -9.90755 -9.62735 -9.38190 -9.24052 -9.13885 -8.35125 -6.43512 -5.67250 -3.22487 3.39807 3.47692 3.50676 4.55235 5.21316 5.33292 5.36917 5.46564 5.65437 5.67752 5.76981 5.89898 5.96326 6.16398 6.18484 6.21750 6.26333 6.30801 6.38307 6.41526 6.51300 6.58070 6.61723 6.66571 6.68688 6.77638 6.80150 6.97627 6.99051 7.11217 7.16538 7.29832 7.38999 7.43823 7.85097 7.93727 8.63085 9.31674 9.96050 10.53170 11.32328 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.010705 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.303072 B = 2615.048054 C = 2865.876190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.068 0.932 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.120 4.120 9 C 0.182 3.818 10 H 0.043 0.957 11 N -0.578 5.578 12 C -0.242 4.242 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.288 1.288 18 H -0.280 1.280 19 H -0.291 1.291 20 C 0.139 3.861 21 C -0.169 4.169 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.252 0.748 36 H 0.016 0.984 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 0.177 -8.195 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.113 4.113 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.159 4.159 9 C 0.075 3.925 10 H 0.061 0.939 11 N -0.298 5.298 12 C -0.372 4.372 13 H 0.077 0.923 14 C -0.193 4.193 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.215 1.215 18 H -0.205 1.205 19 H -0.217 1.217 20 C 0.013 3.987 21 C -0.229 4.229 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.720 0.154 -8.058 9.883 hybrid contribution -0.328 0.091 0.964 1.022 sum -6.048 0.245 -7.094 9.326 Atomic orbital electron populations 1.21825 0.97637 1.00266 1.00951 1.21687 0.93892 0.97574 1.02363 1.21521 0.98563 0.95098 0.96127 0.91331 1.21618 0.99453 0.95466 0.98427 1.21503 0.96403 0.96995 1.00418 1.21571 0.95301 0.99661 0.99035 1.21894 1.00614 0.97867 0.95531 1.20356 0.91493 0.91536 0.89128 0.93883 1.43879 1.58649 1.26558 1.00708 1.18921 0.96628 1.35376 0.86265 0.92321 1.25084 0.94620 1.01038 0.98511 1.69967 1.02034 1.52832 1.28639 0.86490 0.78681 0.77589 0.85183 1.21518 1.20519 1.21709 1.20933 0.91874 0.84087 1.01824 1.22532 1.00753 0.99119 1.00453 0.93174 0.93565 0.93921 0.93723 0.89494 0.92945 0.92904 0.93353 0.92369 0.93041 0.93263 0.91744 0.92698 0.93830 0.96524 0.88560 0.93336 0.94089 0.95183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 37.16 0.36 -1.87 16 2 C -0.12 -2.05 4.17 -26.73 -0.11 -2.16 16 3 C -0.09 -1.68 1.54 -90.62 -0.14 -1.82 16 4 H 0.07 1.39 6.98 -51.93 -0.36 1.03 16 5 C -0.11 -1.70 4.96 -26.74 -0.13 -1.83 16 6 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 7 C -0.12 -1.89 5.92 -26.73 -0.16 -2.05 16 8 C -0.12 -2.41 5.17 -26.73 -0.14 -2.55 16 9 C 0.18 3.75 2.08 -67.93 -0.14 3.61 16 10 H 0.04 0.88 7.83 -51.93 -0.41 0.47 16 11 N -0.58 -13.82 1.67 -165.66 -0.28 -14.10 16 12 C -0.24 -6.37 8.23 -15.06 -0.12 -6.49 16 13 H 0.06 1.57 6.83 -52.49 -0.36 1.21 16 14 C 0.01 0.18 4.97 -17.43 -0.09 0.09 16 15 N -0.89 -25.45 11.32 55.49 0.63 -24.82 16 16 Si 0.89 21.60 29.60 -169.99 -5.03 16.57 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.14 3.27 5.94 -4.04 -0.02 3.24 16 21 C -0.17 -3.42 8.77 37.16 0.33 -3.09 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.62 6.57 -51.93 -0.34 0.28 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.74 7.78 -51.93 -0.40 0.34 16 26 H 0.09 1.73 5.01 -51.93 -0.26 1.47 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.43 7.66 -51.93 -0.40 1.03 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.38 7.98 -51.93 -0.41 -0.04 16 37 H 0.10 2.58 5.36 -51.93 -0.28 2.30 16 38 H 0.05 1.03 7.85 -51.93 -0.41 0.62 16 39 H 0.04 0.77 5.99 -51.93 -0.31 0.46 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -27.04 295.24 -7.98 -35.02 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.22 Total: -0.31 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.53 Total: -16.80 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.35 Total: -38.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.04 -7.98 -35.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082657764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.658 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds