Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 H 1.09006 * 109.46720 * 55.00483 * 3 2 1 5 5 C 1.52993 * 109.47502 * 295.00159 * 3 2 1 6 6 C 1.52998 * 109.47502 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47039 * 59.99809 * 6 5 3 8 8 C 1.53003 * 109.47147 * 300.00385 * 7 6 5 9 9 C 1.52996 * 109.47101 * 59.99877 * 8 7 6 10 10 H 1.09002 * 109.47578 * 60.00013 * 9 8 7 11 11 N 1.46500 * 109.46972 * 180.02562 * 9 8 7 12 12 C 1.36946 * 119.99967 * 60.00283 * 11 9 8 13 13 H 1.07996 * 119.99951 * 35.52479 * 12 11 9 14 14 C 1.38807 * 119.99504 * 215.52827 * 12 11 9 15 15 N 1.31621 * 120.00657 * 20.75708 * 14 12 11 16 16 Si 1.86807 * 119.99834 * 200.75427 * 14 12 11 17 17 H 1.48501 * 109.47014 * 270.00594 * 16 14 12 18 18 H 1.48504 * 109.46891 * 29.99967 * 16 14 12 19 19 H 1.48492 * 109.47445 * 149.99988 * 16 14 12 20 20 C 1.46496 * 120.00251 * 239.99846 * 11 9 8 21 21 C 1.53001 * 109.47213 * 272.73193 * 20 11 9 22 22 H 1.09005 * 109.46970 * 300.00326 * 1 2 3 23 23 H 1.09004 * 109.46735 * 59.99526 * 1 2 3 24 24 H 1.08992 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46848 * 239.99887 * 2 1 3 26 26 H 1.09004 * 109.46735 * 120.00474 * 2 1 3 27 27 H 1.09002 * 109.46913 * 299.99861 * 5 3 2 28 28 H 1.08998 * 109.47184 * 59.99854 * 5 3 2 29 29 H 1.08994 * 109.47808 * 179.97438 * 6 5 3 30 30 H 1.09002 * 109.47395 * 300.00097 * 6 5 3 31 31 H 1.09002 * 109.47226 * 60.00231 * 7 6 5 32 32 H 1.08992 * 109.47292 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46932 * 300.00026 * 8 7 6 34 34 H 1.08998 * 109.47202 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47027 * 32.72915 * 20 11 9 37 37 H 1.09004 * 109.47479 * 152.72944 * 20 11 9 38 38 H 1.08998 * 109.47203 * 299.99527 * 21 20 11 39 39 H 1.08996 * 109.47461 * 60.00027 * 21 20 11 40 40 H 1.09003 * 109.46889 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3072 6 6 2.1459 3.5689 -1.3075 7 6 3.6708 3.5701 -1.1821 8 6 4.0755 2.8859 0.1252 9 6 3.5649 1.4437 0.1254 10 1 3.9991 0.9043 -0.7164 11 7 3.9520 0.7888 1.3775 12 6 3.5205 1.2927 2.5756 13 1 2.5370 1.7319 2.6539 14 6 4.3474 1.2388 3.6892 15 7 5.6472 1.0976 3.5377 16 14 3.6154 1.3668 5.4031 17 1 3.5677 2.7925 5.8157 18 1 2.2399 0.8071 5.3969 19 1 4.4564 0.6026 6.3589 20 6 4.8004 -0.4051 1.3479 21 6 3.9240 -1.6500 1.1964 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0699 1.5876 -2.1491 28 1 0.5490 2.1253 -1.3968 29 1 1.8580 4.0561 -2.2390 30 1 1.7117 4.1082 -0.4657 31 1 4.1050 3.0308 -2.0239 32 1 4.0345 4.5975 -1.1818 33 1 3.6413 3.4252 0.9671 34 1 5.1618 2.8872 0.2148 35 1 6.2249 1.0596 4.3159 36 1 5.4889 -0.3407 0.5052 37 1 5.3677 -0.4708 2.2764 38 1 3.2356 -1.7144 2.0390 39 1 3.3568 -1.5843 0.2680 40 1 4.5554 -2.5383 1.1748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082657764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = -25.835539 kcal Electronic energy + Delta-G solvation = -17200.880341 eV Core-core repulsion = 14821.335395 eV Total energy + Delta-G solvation = -2379.544947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14634 -36.73786 -34.66903 -33.31736 -31.72868 -30.01574 -28.84660 -26.05740 -24.48786 -23.34226 -21.76388 -21.31092 -20.65779 -18.06211 -17.00063 -16.17318 -15.57831 -15.49887 -15.33396 -14.88581 -14.43927 -14.10343 -14.02364 -13.72146 -13.49986 -13.09867 -13.00789 -12.71532 -12.62697 -12.40177 -12.18638 -12.00327 -11.92262 -11.79612 -11.60721 -11.44702 -11.33167 -11.00069 -10.79281 -10.65463 -10.36208 -8.42831 -7.72214 -5.30685 1.43761 1.46994 1.55181 2.54829 3.32582 3.65037 3.94687 4.09530 4.24073 4.36468 4.47697 4.56902 4.59324 4.64491 4.70431 4.81773 4.86070 4.90029 4.95204 5.01162 5.05360 5.10950 5.16606 5.22410 5.29403 5.35149 5.39115 5.43692 5.52074 5.55749 5.61030 5.65475 5.76895 5.84204 5.86107 5.96419 6.56622 7.27661 8.01122 8.51453 9.23053 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.010705 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.303072 B = 2615.048054 C = 2865.876190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.041 0.959 5 C -0.106 4.106 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.177 3.823 10 H 0.048 0.952 11 N -0.590 5.590 12 C -0.233 4.233 13 H 0.052 0.948 14 C -0.045 4.045 15 N -0.922 5.922 16 Si 0.946 3.054 17 H -0.288 1.288 18 H -0.274 1.274 19 H -0.294 1.294 20 C 0.136 3.864 21 C -0.152 4.152 22 H 0.039 0.961 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.024 0.976 35 H 0.246 0.754 36 H 0.017 0.983 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 0.112 -10.125 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.105 4.105 4 H 0.059 0.941 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.153 4.153 9 C 0.071 3.929 10 H 0.066 0.934 11 N -0.310 5.310 12 C -0.364 4.364 13 H 0.070 0.930 14 C -0.240 4.240 15 N -0.568 5.568 16 Si 0.775 3.225 17 H -0.215 1.215 18 H -0.200 1.200 19 H -0.221 1.221 20 C 0.010 3.990 21 C -0.211 4.211 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.506 0.090 -10.006 12.509 hybrid contribution 0.243 0.117 1.509 1.533 sum -7.263 0.207 -8.497 11.180 Atomic orbital electron populations 1.21761 0.95525 1.01332 1.01434 1.21614 0.95763 0.96533 1.01408 1.21384 0.96064 0.95952 0.97122 0.94057 1.21584 1.00792 0.95374 0.96602 1.21499 0.94839 0.96978 1.01711 1.21509 0.96767 0.99913 0.96611 1.21790 0.98370 0.98020 0.97141 1.20560 0.93452 0.91270 0.87640 0.93408 1.44054 1.58516 1.27139 1.01251 1.19025 0.96066 1.33905 0.87401 0.93043 1.25680 0.94919 1.02043 1.01396 1.70101 1.02981 1.54840 1.28894 0.85613 0.78011 0.77239 0.81638 1.21542 1.19951 1.22092 1.20862 0.92364 0.85619 1.00123 1.22307 1.00127 0.98105 1.00551 0.94188 0.91536 0.92637 0.92620 0.92432 0.91645 0.90925 0.90157 0.93253 0.91664 0.92124 0.94656 0.95727 0.94426 0.96472 0.91855 0.94872 0.92466 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.67 71.98 0.70 -3.18 16 2 C -0.12 -3.79 4.17 30.59 0.13 -3.66 16 3 C -0.08 -2.97 1.54 -10.79 -0.02 -2.99 16 4 H 0.04 1.67 6.98 -2.38 -0.02 1.65 16 5 C -0.11 -2.85 4.96 30.59 0.15 -2.70 16 6 C -0.11 -2.97 5.92 30.60 0.18 -2.79 16 7 C -0.11 -3.31 5.92 30.60 0.18 -3.13 16 8 C -0.11 -4.63 5.17 30.59 0.16 -4.47 16 9 C 0.18 7.24 2.08 44.99 0.09 7.33 16 10 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 11 N -0.59 -28.69 1.67 -678.03 -1.13 -29.82 16 12 C -0.23 -12.58 8.23 84.03 0.69 -11.89 16 13 H 0.05 2.82 6.83 -2.91 -0.02 2.80 16 14 C -0.04 -2.49 4.97 84.86 0.42 -2.07 16 15 N -0.92 -54.54 11.32 21.65 0.25 -54.29 16 16 Si 0.95 45.49 29.60 68.60 2.03 47.52 16 17 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 20 C 0.14 6.51 5.94 86.38 0.51 7.03 16 21 C -0.15 -6.03 8.77 71.98 0.63 -5.40 16 22 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.07 1.53 6.57 -2.38 -0.02 1.51 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 26 H 0.06 2.24 5.01 -2.38 -0.01 2.22 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.72 6.56 -2.39 -0.02 1.70 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.03 1.60 7.66 -2.39 -0.02 1.59 16 34 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.02 0.79 7.98 -2.38 -0.02 0.77 16 37 H 0.06 3.51 5.36 -2.38 -0.01 3.49 16 38 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 39 H 0.06 2.06 5.99 -2.39 -0.01 2.05 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -59.56 295.24 5.95 -53.61 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.97 Total: 10.89 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.83 Total: -27.92 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -0.88 Total: -84.11 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -59.56 5.95 -53.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082657764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.778 kcal (2) G-P(sol) polarization free energy of solvation -59.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds