Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 H 1.08993 * 110.02045 * 306.39036 * 3 2 1 5 5 C 1.54269 * 110.07380 * 67.81424 * 3 2 1 6 6 C 1.54889 * 104.19629 * 142.91334 * 5 3 2 7 7 C 1.54890 * 102.74944 * 322.05815 * 6 5 3 8 8 H 1.09000 * 110.59907 * 279.20565 * 7 6 5 9 9 N 1.46900 * 110.48651 * 156.62005 * 7 6 5 10 10 C 1.46903 * 111.00000 * 90.22347 * 9 7 6 11 11 H 1.09002 * 109.47056 * 324.99826 * 10 9 7 12 12 C 1.53000 * 109.47096 * 84.99749 * 10 9 7 13 13 C 1.50694 * 109.47066 * 204.99984 * 10 9 7 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 10 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 C 1.53879 * 110.03033 * 185.00454 * 3 2 1 22 22 H 1.09005 * 110.03409 * 359.94621 * 21 3 2 23 23 C 1.52992 * 110.07737 * 121.35965 * 21 3 2 24 24 H 1.08993 * 109.47282 * 59.99513 * 1 2 3 25 25 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46792 * 299.99791 * 1 2 3 27 27 H 1.09004 * 109.46792 * 240.00209 * 2 1 3 28 28 H 1.09000 * 109.47515 * 120.00159 * 2 1 3 29 29 H 1.09000 * 110.48279 * 261.59147 * 5 3 2 30 30 H 1.09003 * 110.48382 * 24.23742 * 5 3 2 31 31 H 1.08997 * 110.75700 * 203.74125 * 6 5 3 32 32 H 1.09006 * 110.75376 * 80.36734 * 6 5 3 33 33 H 1.00896 * 110.99858 * 326.27243 * 9 7 6 34 34 H 1.09007 * 109.46721 * 60.00347 * 12 10 9 35 35 H 1.08995 * 109.47131 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47544 * 300.00439 * 12 10 9 37 37 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47753 * 178.64198 * 23 21 3 39 39 H 1.09004 * 109.47049 * 298.64742 * 23 21 3 40 40 H 1.09007 * 109.46967 * 58.64340 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9968 -0.8244 5 6 1.7006 2.1241 1.3417 6 6 2.9290 3.0214 1.6333 7 6 4.1125 2.1506 1.1434 8 1 4.3809 1.4097 1.8965 9 7 5.2706 2.9934 0.8175 10 6 6.1368 3.1742 1.9901 11 1 5.5242 3.2213 2.8905 12 6 7.1068 1.9956 2.0943 13 6 6.9168 4.4555 1.8457 14 1 6.7823 5.0739 0.9706 15 6 7.8015 4.8389 2.8314 16 7 8.4862 5.9543 2.7028 17 14 8.0337 3.7696 4.3454 18 1 9.1210 2.7892 4.0969 19 1 8.3936 4.6247 5.5048 20 1 6.7709 3.0449 4.6379 21 6 3.5735 1.4593 -0.1261 22 1 3.9545 0.4398 -0.1864 23 6 3.9896 2.2482 -1.3692 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7999 2.7301 1.2445 30 1 1.5774 1.3789 2.1277 31 1 3.0145 3.2242 2.7008 32 1 2.8721 3.9504 1.0658 33 1 4.9765 3.8836 0.4446 34 1 7.7194 1.9486 1.1939 35 1 7.7497 2.1300 2.9641 36 1 6.5426 1.0688 2.1987 37 1 9.1083 6.2241 3.3964 38 1 5.0772 2.2744 -1.4358 39 1 3.5826 1.7665 -2.2583 40 1 3.6053 3.2659 -1.2991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083049074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -24.619736 kcal Electronic energy + Delta-G solvation = -16427.894222 eV Core-core repulsion = 14048.401996 eV Total energy + Delta-G solvation = -2379.492226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14443 -35.59432 -33.14207 -31.63826 -30.70452 -28.97992 -25.92281 -25.30465 -24.41585 -22.15564 -20.31176 -19.80367 -18.65271 -16.71056 -15.69179 -15.15960 -14.75383 -14.34332 -13.62858 -13.55748 -12.97201 -12.84404 -12.58505 -12.36607 -12.29722 -12.12203 -11.91167 -11.58200 -11.27639 -11.08088 -10.86168 -10.50531 -10.45788 -10.35128 -10.28090 -10.11042 -9.98019 -9.92035 -9.43726 -8.97983 -8.58824 -7.35003 -6.08158 -4.07298 3.28073 3.37323 3.39826 4.40173 4.71683 4.82111 4.86520 5.15796 5.24362 5.31207 5.32152 5.50021 5.64515 5.73522 5.76625 5.80380 5.89166 5.93233 5.97488 5.97931 6.14948 6.20188 6.22372 6.33101 6.42946 6.45669 6.51777 6.54245 6.62959 6.74728 6.76237 6.88969 6.91747 7.44307 7.62164 8.02621 8.42493 8.66476 8.97312 9.54849 11.04967 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045155 B = 0.006483 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.942447 B = 4318.182464 C = 4449.729178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.153 4.153 7 C 0.087 3.913 8 H 0.071 0.929 9 N -0.669 5.669 10 C 0.181 3.819 11 H 0.000 1.000 12 C -0.137 4.137 13 C -0.517 4.517 14 H 0.078 0.922 15 C 0.071 3.929 16 N -0.900 5.900 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.269 1.269 21 C -0.081 4.081 22 H 0.065 0.935 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.340 0.660 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 -10.239 -3.956 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.192 4.192 7 C -0.024 4.024 8 H 0.089 0.911 9 N -0.299 5.299 10 C 0.072 3.928 11 H 0.017 0.983 12 C -0.194 4.194 13 C -0.555 4.555 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.194 1.194 21 C -0.100 4.100 22 H 0.084 0.916 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.985 -10.631 -4.135 17.283 hybrid contribution -0.269 0.109 1.471 1.499 sum -13.254 -10.522 -2.665 17.131 Atomic orbital electron populations 1.21789 0.96347 1.01047 1.01709 1.21639 0.95370 0.96672 1.01688 1.21921 0.95866 0.95367 0.97718 0.91253 1.22345 0.97677 0.98414 0.96852 1.23213 0.96030 0.98781 1.01168 1.22416 0.89444 0.95401 0.95135 0.91055 1.60573 1.16785 1.19915 1.32597 1.19516 0.91050 0.94387 0.87833 0.98284 1.22075 0.99506 0.97476 1.00380 1.21116 1.23117 1.04376 1.06928 0.90447 1.24935 0.95237 0.94957 0.97991 1.69898 1.26562 1.22847 1.34489 0.86800 0.78843 0.79697 0.82474 1.20566 1.22636 1.19436 1.21770 0.93037 0.99266 0.95972 0.91646 1.21642 1.02984 0.98981 0.95235 0.92989 0.93255 0.92736 0.92272 0.92123 0.92421 0.92003 0.92031 0.91447 0.84066 0.92428 0.94667 0.95675 0.92649 0.90721 0.94497 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.77 37.16 0.36 -1.02 16 2 C -0.12 -1.22 5.06 -26.73 -0.14 -1.36 16 3 C -0.09 -1.08 2.58 -89.50 -0.23 -1.31 16 4 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 5 C -0.11 -1.44 5.54 -25.07 -0.14 -1.57 16 6 C -0.15 -2.34 6.46 -24.74 -0.16 -2.50 16 7 C 0.09 1.46 2.79 -66.05 -0.18 1.28 16 8 H 0.07 1.27 7.20 -51.93 -0.37 0.89 16 9 N -0.67 -13.41 4.62 -99.22 -0.46 -13.87 16 10 C 0.18 4.30 2.06 -68.87 -0.14 4.16 16 11 H 0.00 -0.01 6.91 -51.93 -0.36 -0.37 16 12 C -0.14 -3.10 8.88 37.16 0.33 -2.77 16 13 C -0.52 -14.48 9.17 -34.44 -0.32 -14.79 16 14 H 0.08 2.34 7.86 -52.49 -0.41 1.92 16 15 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 16 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 17 Si 0.89 22.32 24.37 -169.99 -4.14 18.17 16 18 H -0.28 -6.83 6.87 56.52 0.39 -6.45 16 19 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 20 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 21 C -0.08 -1.15 3.13 -89.50 -0.28 -1.43 16 22 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 23 C -0.13 -1.86 8.02 37.15 0.30 -1.56 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.50 7.51 -51.93 -0.39 0.11 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.01 -51.93 -0.42 0.24 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.75 7.76 -51.93 -0.40 0.35 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 33 H 0.34 6.92 7.22 -39.29 -0.28 6.64 16 34 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.03 0.82 3.27 -51.93 -0.17 0.65 16 36 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.68 7.97 -51.93 -0.41 0.26 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -28.82 299.47 -7.35 -36.17 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.34 Total: 2.75 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.69 Total: -20.93 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.32 Total: -40.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.82 -7.35 -36.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.546 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds