Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 H 1.08993 * 110.02045 * 306.39036 * 3 2 1 5 5 C 1.54269 * 110.07380 * 67.81424 * 3 2 1 6 6 C 1.54889 * 104.19629 * 142.91334 * 5 3 2 7 7 C 1.54890 * 102.74944 * 322.05815 * 6 5 3 8 8 H 1.09000 * 110.59907 * 279.20565 * 7 6 5 9 9 N 1.46900 * 110.48651 * 156.62005 * 7 6 5 10 10 C 1.46903 * 111.00000 * 90.22347 * 9 7 6 11 11 H 1.09002 * 109.47056 * 324.99826 * 10 9 7 12 12 C 1.53000 * 109.47096 * 84.99749 * 10 9 7 13 13 C 1.50694 * 109.47066 * 204.99984 * 10 9 7 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 10 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 C 1.53879 * 110.03033 * 185.00454 * 3 2 1 22 22 H 1.09005 * 110.03409 * 359.94621 * 21 3 2 23 23 C 1.52992 * 110.07737 * 121.35965 * 21 3 2 24 24 H 1.08993 * 109.47282 * 59.99513 * 1 2 3 25 25 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46792 * 299.99791 * 1 2 3 27 27 H 1.09004 * 109.46792 * 240.00209 * 2 1 3 28 28 H 1.09000 * 109.47515 * 120.00159 * 2 1 3 29 29 H 1.09000 * 110.48279 * 261.59147 * 5 3 2 30 30 H 1.09003 * 110.48382 * 24.23742 * 5 3 2 31 31 H 1.08997 * 110.75700 * 203.74125 * 6 5 3 32 32 H 1.09006 * 110.75376 * 80.36734 * 6 5 3 33 33 H 1.00896 * 110.99858 * 326.27243 * 9 7 6 34 34 H 1.09007 * 109.46721 * 60.00347 * 12 10 9 35 35 H 1.08995 * 109.47131 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47544 * 300.00439 * 12 10 9 37 37 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47753 * 178.64198 * 23 21 3 39 39 H 1.09004 * 109.47049 * 298.64742 * 23 21 3 40 40 H 1.09007 * 109.46967 * 58.64340 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9968 -0.8244 5 6 1.7006 2.1241 1.3417 6 6 2.9290 3.0214 1.6333 7 6 4.1125 2.1506 1.1434 8 1 4.3809 1.4097 1.8965 9 7 5.2706 2.9934 0.8175 10 6 6.1368 3.1742 1.9901 11 1 5.5242 3.2213 2.8905 12 6 7.1068 1.9956 2.0943 13 6 6.9168 4.4555 1.8457 14 1 6.7823 5.0739 0.9706 15 6 7.8015 4.8389 2.8314 16 7 8.4862 5.9543 2.7028 17 14 8.0337 3.7696 4.3454 18 1 9.1210 2.7892 4.0969 19 1 8.3936 4.6247 5.5048 20 1 6.7709 3.0449 4.6379 21 6 3.5735 1.4593 -0.1261 22 1 3.9545 0.4398 -0.1864 23 6 3.9896 2.2482 -1.3692 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7999 2.7301 1.2445 30 1 1.5774 1.3789 2.1277 31 1 3.0145 3.2242 2.7008 32 1 2.8721 3.9504 1.0658 33 1 4.9765 3.8836 0.4446 34 1 7.7194 1.9486 1.1939 35 1 7.7497 2.1300 2.9641 36 1 6.5426 1.0688 2.1987 37 1 9.1083 6.2241 3.3964 38 1 5.0772 2.2744 -1.4358 39 1 3.5826 1.7665 -2.2583 40 1 3.6053 3.2659 -1.2991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083049074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -41.814003 kcal Electronic energy + Delta-G solvation = -16428.639821 eV Core-core repulsion = 14048.401996 eV Total energy + Delta-G solvation = -2380.237825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35184 -37.20313 -34.69949 -33.32365 -31.84963 -30.52698 -27.35924 -26.85183 -25.89357 -23.10794 -22.03501 -21.01883 -19.95233 -18.72413 -17.41164 -16.33578 -16.19569 -15.58189 -15.17842 -14.90169 -14.69227 -14.11369 -13.98253 -13.89230 -13.53730 -13.34940 -13.26557 -12.90290 -12.68957 -12.50108 -12.28218 -12.08748 -12.00971 -11.59303 -11.48727 -11.39075 -11.27122 -11.15028 -11.12004 -10.90576 -10.76478 -8.97856 -8.31911 -6.35639 1.29137 1.33222 1.43875 2.29723 3.03507 3.45184 3.75525 3.79292 4.00755 4.28716 4.39033 4.47708 4.52774 4.57331 4.66407 4.67932 4.74238 4.76334 4.79961 4.88627 4.90750 4.98804 5.03713 5.03935 5.19473 5.23754 5.26604 5.29864 5.39722 5.47823 5.50900 5.53581 5.61724 5.64604 5.75423 6.04956 6.55234 6.70050 6.88043 7.31285 8.84651 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045155 B = 0.006483 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.942447 B = 4318.182464 C = 4449.729178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.083 4.083 4 H 0.075 0.925 5 C -0.106 4.106 6 C -0.153 4.153 7 C 0.081 3.919 8 H 0.065 0.935 9 N -0.668 5.668 10 C 0.187 3.813 11 H -0.008 1.008 12 C -0.133 4.133 13 C -0.521 4.521 14 H 0.039 0.961 15 C 0.015 3.985 16 N -0.947 5.947 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.298 1.298 20 H -0.253 1.253 21 C -0.076 4.076 22 H 0.069 0.931 23 C -0.127 4.127 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.335 0.665 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 -12.478 -3.656 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.101 4.101 4 H 0.093 0.907 5 C -0.144 4.144 6 C -0.192 4.192 7 C -0.029 4.029 8 H 0.083 0.917 9 N -0.298 5.298 10 C 0.077 3.923 11 H 0.010 0.990 12 C -0.190 4.190 13 C -0.559 4.559 14 H 0.058 0.942 15 C -0.183 4.183 16 N -0.587 5.587 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.225 1.225 20 H -0.178 1.178 21 C -0.095 4.095 22 H 0.087 0.913 23 C -0.185 4.185 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.681 -12.893 -3.848 19.914 hybrid contribution 0.223 0.864 1.285 1.564 sum -14.458 -12.029 -2.563 18.981 Atomic orbital electron populations 1.21770 0.95168 1.01831 1.01934 1.21610 0.96361 0.95248 1.01883 1.21863 0.94010 0.96697 0.97574 0.90666 1.22311 0.96673 0.98105 0.97319 1.23158 0.97051 0.98884 1.00139 1.22553 0.88718 0.95022 0.96637 0.91659 1.60573 1.18308 1.19917 1.30991 1.19344 0.91307 0.92835 0.88830 0.99014 1.21983 0.99211 0.98079 0.99772 1.21404 1.23318 1.05723 1.05459 0.94230 1.25776 0.95015 0.96194 1.01314 1.70040 1.27810 1.24921 1.35909 0.85802 0.79683 0.78169 0.78407 1.19275 1.22538 1.17751 1.21743 0.94633 0.98868 0.94271 0.91263 1.21584 1.01488 0.99054 0.96332 0.92598 0.92267 0.92697 0.91789 0.92293 0.91001 0.91236 0.93296 0.92175 0.84653 0.93097 0.95239 0.92814 0.92492 0.93019 0.92402 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.77 71.98 0.70 -1.53 16 2 C -0.11 -2.02 5.06 30.59 0.15 -1.86 16 3 C -0.08 -1.76 2.58 -10.07 -0.03 -1.78 16 4 H 0.07 1.55 7.67 -2.39 -0.02 1.53 16 5 C -0.11 -2.38 5.54 31.67 0.18 -2.20 16 6 C -0.15 -4.53 6.46 31.89 0.21 -4.32 16 7 C 0.08 2.63 2.79 45.99 0.13 2.75 16 8 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 9 N -0.67 -26.80 4.62 -467.81 -2.16 -28.96 16 10 C 0.19 8.80 2.06 44.17 0.09 8.89 16 11 H -0.01 -0.37 6.91 -2.39 -0.02 -0.39 16 12 C -0.13 -5.80 8.88 71.98 0.64 -5.16 16 13 C -0.52 -29.87 9.17 25.60 0.23 -29.63 16 14 H 0.04 2.50 7.86 -2.91 -0.02 2.48 16 15 C 0.01 0.86 5.45 84.66 0.46 1.32 16 16 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 17 Si 0.95 45.74 24.37 68.60 1.67 47.41 16 18 H -0.27 -12.24 6.87 99.48 0.68 -11.56 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.25 -11.42 6.53 99.48 0.65 -10.78 16 21 C -0.08 -2.00 3.13 -10.07 -0.03 -2.03 16 22 H 0.07 1.79 7.67 -2.38 -0.02 1.77 16 23 C -0.13 -3.45 8.02 71.98 0.58 -2.87 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.82 7.51 -2.39 -0.02 0.80 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.08 8.01 -2.39 -0.02 1.06 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.48 7.76 -2.39 -0.02 1.46 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.85 7.79 -2.38 -0.02 1.83 16 33 H 0.34 13.97 7.22 -89.70 -0.65 13.32 16 34 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 36 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.05 1.63 7.45 -2.39 -0.02 1.62 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.04 1.17 7.97 -2.38 -0.02 1.15 16 Total: -1.00 -62.24 299.47 3.38 -58.86 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.26 Total: 20.31 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 3.31 Total: -38.43 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -1.86 Total: -88.15 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -62.24 3.38 -58.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.049 kcal (2) G-P(sol) polarization free energy of solvation -62.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds