Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 H 1.09006 * 110.01809 * 54.93437 * 3 2 1 5 5 C 1.54263 * 110.03194 * 293.54041 * 3 2 1 6 6 C 1.54889 * 104.20058 * 217.10477 * 5 3 2 7 7 C 1.54894 * 102.74417 * 37.94446 * 6 5 3 8 8 H 1.08996 * 110.48468 * 80.86835 * 7 6 5 9 9 N 1.46903 * 110.48489 * 203.38108 * 7 6 5 10 10 C 1.46899 * 110.99807 * 273.54384 * 9 7 6 11 11 H 1.09001 * 109.46901 * 325.00224 * 10 9 7 12 12 C 1.53006 * 109.47163 * 84.99961 * 10 9 7 13 13 C 1.50698 * 109.47365 * 205.00210 * 10 9 7 14 14 H 1.08004 * 119.99528 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00356 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99554 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00086 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47245 * 89.99579 * 17 15 13 19 19 H 1.48501 * 109.47356 * 209.99508 * 17 15 13 20 20 H 1.48499 * 109.47321 * 329.99647 * 17 15 13 21 21 C 1.53871 * 110.03098 * 176.37594 * 3 2 1 22 22 H 1.09002 * 110.03150 * 238.56613 * 21 3 2 23 23 C 1.52996 * 110.03415 * 359.97438 * 21 3 2 24 24 H 1.08994 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47203 * 300.00806 * 1 2 3 26 26 H 1.09007 * 109.46475 * 60.00107 * 1 2 3 27 27 H 1.08992 * 109.47263 * 239.99755 * 2 1 3 28 28 H 1.08998 * 109.46430 * 119.99643 * 2 1 3 29 29 H 1.09004 * 110.48438 * 98.42810 * 5 3 2 30 30 H 1.09005 * 110.49048 * 335.78798 * 5 3 2 31 31 H 1.08996 * 110.75808 * 279.63068 * 6 5 3 32 32 H 1.08999 * 110.91370 * 156.32881 * 6 5 3 33 33 H 1.00902 * 111.00051 * 37.49827 * 9 7 6 34 34 H 1.09001 * 109.47002 * 59.99764 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00030 * 12 10 9 37 37 H 0.97005 * 119.99198 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47147 * 178.61479 * 23 21 3 39 39 H 1.08996 * 109.47595 * 298.61996 * 23 21 3 40 40 H 1.08998 * 109.46871 * 58.62271 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6097 1.9904 0.8383 5 6 1.6705 2.1336 -1.3287 6 6 2.8919 3.0332 -1.6417 7 6 4.0862 2.1588 -1.1850 8 1 4.3366 1.4250 -1.9511 9 7 5.2515 2.9994 -0.8794 10 6 6.0425 3.2624 -2.0890 11 1 6.0178 2.3862 -2.7369 12 6 5.4538 4.4632 -2.8324 13 6 7.4681 3.5609 -1.7020 14 1 7.7574 3.5561 -0.6614 15 6 8.4027 3.8411 -2.6761 16 7 8.0502 3.8474 -3.9431 17 14 10.1695 4.2117 -2.1963 18 1 10.9487 2.9480 -2.1623 19 1 10.7692 5.1364 -3.1915 20 1 10.1953 4.8453 -0.8535 21 6 3.5760 1.4585 0.0914 22 1 3.8917 2.0147 0.9740 23 6 4.1122 0.0269 0.1543 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7722 2.7390 -1.2068 30 1 1.5292 1.3942 -2.1170 31 1 2.8481 3.9580 -1.0665 32 1 2.9550 3.2462 -2.7088 33 1 4.9696 3.8614 -0.4372 34 1 5.4784 5.3394 -2.1844 35 1 6.0404 4.6580 -3.7300 36 1 4.4227 4.2473 -3.1123 37 1 8.7079 4.0442 -4.6285 38 1 5.2013 0.0483 0.1940 39 1 3.7258 -0.4671 1.0457 40 1 3.7917 -0.5203 -0.7322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083049076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -28.115285 kcal Electronic energy + Delta-G solvation = -16371.124870 eV Core-core repulsion = 13991.481066 eV Total energy + Delta-G solvation = -2379.643804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14053 -35.53895 -32.98798 -31.33106 -30.98896 -28.14922 -25.92348 -24.97263 -23.95108 -22.58912 -20.31303 -20.06251 -18.27672 -16.24914 -15.64940 -14.96949 -14.50204 -14.29734 -13.77717 -13.42579 -13.13837 -12.60536 -12.56455 -12.30955 -11.90427 -11.68484 -11.40848 -11.23925 -11.09036 -10.87589 -10.86711 -10.55320 -10.41660 -10.22322 -10.17310 -10.12837 -10.02537 -9.84705 -9.64155 -8.82575 -8.30571 -7.11221 -5.93408 -3.96298 3.35687 3.41628 3.46005 4.47964 4.82297 4.87860 4.93361 5.27553 5.38107 5.38642 5.41785 5.57633 5.66783 5.77602 5.83121 5.90106 5.93550 5.98482 6.03240 6.05378 6.21798 6.26908 6.30479 6.34866 6.50469 6.59676 6.66045 6.70228 6.81842 6.86424 7.00124 7.18857 7.47112 7.81273 7.95817 8.36162 8.64034 8.72164 9.11388 9.68972 11.13473 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050564 B = 0.005988 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.617941 B = 4675.031149 C = 4990.651332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.064 0.936 5 C -0.115 4.115 6 C -0.155 4.155 7 C 0.093 3.907 8 H 0.074 0.926 9 N -0.677 5.677 10 C 0.213 3.787 11 H 0.031 0.969 12 C -0.172 4.172 13 C -0.493 4.493 14 H 0.061 0.939 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.083 4.083 22 H 0.073 0.927 23 C -0.139 4.139 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.325 0.675 34 H 0.025 0.975 35 H 0.085 0.915 36 H 0.012 0.988 37 H 0.258 0.742 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 -5.111 5.841 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.195 4.195 7 C -0.018 4.018 8 H 0.093 0.907 9 N -0.305 5.305 10 C 0.105 3.895 11 H 0.049 0.951 12 C -0.231 4.231 13 C -0.532 4.532 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.102 4.102 22 H 0.091 0.909 23 C -0.196 4.196 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.260 -5.617 5.869 14.708 hybrid contribution 0.362 0.961 -0.385 1.097 sum -11.898 -4.656 5.484 13.904 Atomic orbital electron populations 1.21829 0.96714 1.00956 1.01570 1.21755 0.94845 0.96873 1.02063 1.21831 0.95889 0.95419 0.97624 0.91728 1.22366 0.97635 0.98395 0.96934 1.23370 0.96328 0.98495 1.01260 1.22481 0.89070 0.95180 0.95067 0.90741 1.60780 1.19526 1.20809 1.29401 1.19179 0.91599 0.93295 0.85435 0.95116 1.22549 0.97297 0.99729 1.03527 1.21196 0.92977 1.45657 0.93400 0.92071 1.24948 0.98824 0.95846 0.94973 1.69897 1.33974 1.50493 0.99475 0.86530 0.84884 0.78038 0.78101 1.20821 1.21484 1.19985 1.21753 0.92752 0.96470 0.99226 0.90898 1.21881 1.01444 0.95900 1.00408 0.93307 0.93153 0.92817 0.91750 0.91851 0.92651 0.91954 0.91990 0.91622 0.85802 0.95619 0.89611 0.96908 0.93186 0.92270 0.93457 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.75 37.16 0.36 -1.12 16 2 C -0.12 -1.30 4.10 -26.73 -0.11 -1.41 16 3 C -0.09 -1.12 2.94 -89.51 -0.26 -1.38 16 4 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.12 -1.51 5.46 -25.07 -0.14 -1.64 16 6 C -0.16 -2.46 5.33 -24.74 -0.13 -2.59 16 7 C 0.09 1.66 2.69 -66.05 -0.18 1.49 16 8 H 0.07 1.46 7.22 -51.93 -0.38 1.08 16 9 N -0.68 -14.40 6.04 -99.21 -0.60 -15.00 16 10 C 0.21 5.37 2.57 -68.86 -0.18 5.20 16 11 H 0.03 0.86 7.47 -51.93 -0.39 0.47 16 12 C -0.17 -4.15 8.73 37.16 0.32 -3.83 16 13 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 16 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.08 -1.24 3.23 -89.50 -0.29 -1.53 16 22 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 23 C -0.14 -1.98 7.88 37.16 0.29 -1.69 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.52 7.46 -51.92 -0.39 0.13 16 27 H 0.06 0.74 6.82 -51.93 -0.35 0.39 16 28 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 31 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 32 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 33 H 0.32 6.66 8.04 -39.29 -0.32 6.34 16 34 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 36 H 0.01 0.26 5.48 -51.93 -0.28 -0.02 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.58 6.73 -51.93 -0.35 0.23 16 40 H 0.05 0.70 6.75 -51.93 -0.35 0.34 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -27.96 298.82 -8.30 -36.26 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.11 Total: 4.09 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -0.71 Total: -21.21 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.03 Total: -40.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.96 -8.30 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.144 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds