Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 H 1.09006 * 110.01809 * 54.93437 * 3 2 1 5 5 C 1.54263 * 110.03194 * 293.54041 * 3 2 1 6 6 C 1.54889 * 104.20058 * 217.10477 * 5 3 2 7 7 C 1.54894 * 102.74417 * 37.94446 * 6 5 3 8 8 H 1.08996 * 110.48468 * 80.86835 * 7 6 5 9 9 N 1.46903 * 110.48489 * 203.38108 * 7 6 5 10 10 C 1.46899 * 110.99807 * 273.54384 * 9 7 6 11 11 H 1.09001 * 109.46901 * 325.00224 * 10 9 7 12 12 C 1.53006 * 109.47163 * 84.99961 * 10 9 7 13 13 C 1.50698 * 109.47365 * 205.00210 * 10 9 7 14 14 H 1.08004 * 119.99528 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00356 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99554 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00086 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47245 * 89.99579 * 17 15 13 19 19 H 1.48501 * 109.47356 * 209.99508 * 17 15 13 20 20 H 1.48499 * 109.47321 * 329.99647 * 17 15 13 21 21 C 1.53871 * 110.03098 * 176.37594 * 3 2 1 22 22 H 1.09002 * 110.03150 * 238.56613 * 21 3 2 23 23 C 1.52996 * 110.03415 * 359.97438 * 21 3 2 24 24 H 1.08994 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47203 * 300.00806 * 1 2 3 26 26 H 1.09007 * 109.46475 * 60.00107 * 1 2 3 27 27 H 1.08992 * 109.47263 * 239.99755 * 2 1 3 28 28 H 1.08998 * 109.46430 * 119.99643 * 2 1 3 29 29 H 1.09004 * 110.48438 * 98.42810 * 5 3 2 30 30 H 1.09005 * 110.49048 * 335.78798 * 5 3 2 31 31 H 1.08996 * 110.75808 * 279.63068 * 6 5 3 32 32 H 1.08999 * 110.91370 * 156.32881 * 6 5 3 33 33 H 1.00902 * 111.00051 * 37.49827 * 9 7 6 34 34 H 1.09001 * 109.47002 * 59.99764 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00030 * 12 10 9 37 37 H 0.97005 * 119.99198 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47147 * 178.61479 * 23 21 3 39 39 H 1.08996 * 109.47595 * 298.61996 * 23 21 3 40 40 H 1.08998 * 109.46871 * 58.62271 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6097 1.9904 0.8383 5 6 1.6705 2.1336 -1.3287 6 6 2.8919 3.0332 -1.6417 7 6 4.0862 2.1588 -1.1850 8 1 4.3366 1.4250 -1.9511 9 7 5.2515 2.9994 -0.8794 10 6 6.0425 3.2624 -2.0890 11 1 6.0178 2.3862 -2.7369 12 6 5.4538 4.4632 -2.8324 13 6 7.4681 3.5609 -1.7020 14 1 7.7574 3.5561 -0.6614 15 6 8.4027 3.8411 -2.6761 16 7 8.0502 3.8474 -3.9431 17 14 10.1695 4.2117 -2.1963 18 1 10.9487 2.9480 -2.1623 19 1 10.7692 5.1364 -3.1915 20 1 10.1953 4.8453 -0.8535 21 6 3.5760 1.4585 0.0914 22 1 3.8917 2.0147 0.9740 23 6 4.1122 0.0269 0.1543 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7722 2.7390 -1.2068 30 1 1.5292 1.3942 -2.1170 31 1 2.8481 3.9580 -1.0665 32 1 2.9550 3.2462 -2.7088 33 1 4.9696 3.8614 -0.4372 34 1 5.4784 5.3394 -2.1844 35 1 6.0404 4.6580 -3.7300 36 1 4.4227 4.2473 -3.1123 37 1 8.7079 4.0442 -4.6285 38 1 5.2013 0.0483 0.1940 39 1 3.7258 -0.4671 1.0457 40 1 3.7917 -0.5203 -0.7322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083049076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -43.980982 kcal Electronic energy + Delta-G solvation = -16371.812858 eV Core-core repulsion = 13991.481066 eV Total energy + Delta-G solvation = -2380.331792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39758 -37.22841 -34.66008 -32.86326 -32.16775 -29.83712 -27.42825 -26.81287 -25.28156 -23.55208 -22.17288 -21.52231 -19.44989 -18.24340 -16.99723 -16.80276 -15.96459 -15.39103 -15.09267 -14.84050 -14.56440 -14.21407 -13.93878 -13.74092 -13.22876 -13.05087 -12.98746 -12.83654 -12.74036 -12.24386 -12.22260 -12.11113 -12.03807 -11.94623 -11.66808 -11.54613 -11.26460 -11.11249 -10.95067 -10.75511 -10.47028 -8.84078 -8.08566 -6.19884 1.42596 1.42876 1.54008 2.44424 3.19251 3.55218 3.74736 3.84874 4.06068 4.32534 4.41411 4.48031 4.52845 4.60956 4.67586 4.77074 4.77482 4.83406 4.87452 4.92154 5.01098 5.08005 5.12670 5.17815 5.23012 5.25551 5.31814 5.37297 5.42256 5.50500 5.55812 5.57479 5.71478 5.72129 5.87129 6.31040 6.72232 6.89738 6.99024 7.50507 8.96706 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050564 B = 0.005988 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.617941 B = 4675.031149 C = 4990.651332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.081 4.081 4 H 0.077 0.923 5 C -0.107 4.107 6 C -0.152 4.152 7 C 0.088 3.912 8 H 0.050 0.950 9 N -0.681 5.681 10 C 0.220 3.780 11 H -0.005 1.005 12 C -0.157 4.157 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.924 5.924 17 Si 0.960 3.040 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.079 4.079 22 H 0.066 0.934 23 C -0.135 4.135 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.330 0.670 34 H 0.028 0.972 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.260 0.740 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.991 -5.304 7.042 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.095 0.905 5 C -0.145 4.145 6 C -0.191 4.191 7 C -0.023 4.023 8 H 0.068 0.932 9 N -0.310 5.310 10 C 0.111 3.889 11 H 0.013 0.987 12 C -0.217 4.217 13 C -0.554 4.554 14 H 0.071 0.929 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.786 3.214 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.098 4.098 22 H 0.085 0.915 23 C -0.192 4.192 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.498 -5.816 7.081 16.314 hybrid contribution 0.720 0.993 -0.767 1.447 sum -12.778 -4.822 6.314 15.046 Atomic orbital electron populations 1.21800 0.95308 1.01784 1.01905 1.21724 0.96039 0.95470 1.02098 1.21783 0.93632 0.96824 0.97725 0.90494 1.22332 0.96871 0.98062 0.97231 1.23263 0.96807 0.98809 1.00205 1.22548 0.88701 0.94732 0.96284 0.93176 1.60673 1.21280 1.21284 1.27734 1.18902 0.91607 0.92019 0.86336 0.98747 1.22350 0.97973 0.99325 1.02017 1.21500 0.94702 1.46107 0.93097 0.92904 1.25728 1.02852 0.95562 0.94907 1.70028 1.35225 1.50844 1.00309 0.85520 0.79909 0.77939 0.78008 1.20390 1.20862 1.19351 1.21706 0.94751 0.96273 0.97048 0.91543 1.21855 0.99723 0.95849 1.01812 0.92331 0.92467 0.92823 0.92388 0.91206 0.90662 0.91717 0.91683 0.93130 0.85229 0.95297 0.92487 0.94723 0.93094 0.94911 0.90993 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.75 71.98 0.70 -1.70 16 2 C -0.12 -2.23 4.10 30.60 0.13 -2.11 16 3 C -0.08 -1.83 2.94 -10.07 -0.03 -1.86 16 4 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 5 C -0.11 -2.55 5.46 31.67 0.17 -2.38 16 6 C -0.15 -4.67 5.33 31.89 0.17 -4.50 16 7 C 0.09 3.16 2.69 45.99 0.12 3.28 16 8 H 0.05 2.03 7.22 -2.39 -0.02 2.01 16 9 N -0.68 -29.46 6.04 -467.79 -2.83 -32.29 16 10 C 0.22 11.45 2.57 44.17 0.11 11.57 16 11 H -0.01 -0.32 7.47 -2.39 -0.02 -0.33 16 12 C -0.16 -7.73 8.73 71.98 0.63 -7.10 16 13 C -0.52 -29.45 8.84 25.60 0.23 -29.23 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.42 5.30 84.65 0.45 0.87 16 16 N -0.92 -54.50 11.32 21.45 0.24 -54.25 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.08 -2.27 3.23 -10.07 -0.03 -2.31 16 22 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 23 C -0.14 -3.74 7.88 71.98 0.57 -3.17 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.86 7.46 -2.38 -0.02 0.84 16 27 H 0.06 1.20 6.82 -2.39 -0.02 1.18 16 28 H 0.07 1.27 6.55 -2.39 -0.02 1.25 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.53 7.78 -2.38 -0.02 1.51 16 31 H 0.06 1.96 7.82 -2.39 -0.02 1.95 16 32 H 0.05 1.69 6.55 -2.39 -0.02 1.68 16 33 H 0.33 13.55 8.04 -89.69 -0.72 12.83 16 34 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 36 H 0.03 1.50 5.48 -2.39 -0.01 1.49 16 37 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.62 6.73 -2.39 -0.02 1.60 16 40 H 0.05 1.46 6.75 -2.39 -0.02 1.44 16 Total: -1.00 -60.42 298.82 2.93 -57.49 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.27 Total: 20.74 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.22 Total: -38.65 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.58 Total: -86.54 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -60.42 2.93 -57.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.507 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds