Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47146 * 2 1 4 4 H 1.09005 * 109.45344 * 183.28115 * 3 2 1 5 5 C 1.53039 * 109.46179 * 63.31083 * 3 2 1 6 6 H 1.09003 * 109.50243 * 300.77896 * 5 3 2 7 7 C 1.50697 * 109.50434 * 60.85984 * 5 3 2 8 8 H 1.08001 * 119.99934 * 34.47316 * 7 5 3 9 9 C 1.37879 * 120.00106 * 214.46934 * 7 5 3 10 10 N 1.31509 * 119.99912 * 354.43101 * 9 7 5 11 11 Si 1.86803 * 119.99999 * 174.42814 * 9 7 5 12 12 H 1.48502 * 109.46909 * 90.00133 * 11 9 7 13 13 H 1.48498 * 109.46812 * 210.00230 * 11 9 7 14 14 H 1.48504 * 109.47113 * 330.00162 * 11 9 7 15 15 C 1.53119 * 109.31110 * 180.82398 * 5 3 2 16 16 C 1.53120 * 109.16361 * 57.63046 * 15 5 3 17 17 C 1.53031 * 109.27748 * 302.35033 * 16 15 5 18 18 N 1.46844 * 109.52754 * 59.17796 * 17 16 15 19 19 C 1.46905 * 111.00403 * 174.16340 * 18 17 16 20 20 C 1.53006 * 109.46474 * 294.14386 * 19 18 17 21 21 C 1.52997 * 109.47371 * 54.13817 * 19 18 17 22 22 H 1.08995 * 109.47298 * 184.75107 * 1 2 3 23 23 H 1.09001 * 109.46805 * 304.75105 * 1 2 3 24 24 H 1.08998 * 109.47298 * 64.74878 * 1 2 3 25 25 H 1.09002 * 109.46789 * 239.99925 * 2 1 3 26 26 H 1.09003 * 109.47239 * 120.00653 * 2 1 3 27 27 H 0.97002 * 120.00232 * 4.88115 * 10 9 7 28 28 H 1.08996 * 109.52116 * 177.54060 * 15 5 3 29 29 H 1.09003 * 109.51775 * 297.66363 * 15 5 3 30 30 H 1.09001 * 109.49746 * 62.28361 * 16 15 5 31 31 H 1.08994 * 109.50338 * 182.36251 * 16 15 5 32 32 H 1.09001 * 109.46201 * 179.19139 * 17 16 15 33 33 H 1.08997 * 109.46210 * 299.15923 * 17 16 15 34 34 H 1.08994 * 109.47237 * 174.14519 * 19 18 17 35 35 H 1.08998 * 109.47230 * 299.99631 * 20 19 18 36 36 H 1.08994 * 109.47280 * 60.00160 * 20 19 18 37 37 H 1.08998 * 109.46470 * 179.97438 * 20 19 18 38 38 H 1.09009 * 109.46540 * 60.00085 * 21 19 18 39 39 H 1.08998 * 109.47407 * 180.02562 * 21 19 18 40 40 H 1.08998 * 109.47153 * 300.00861 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1285 1.4427 -0.0588 5 6 1.5990 2.1392 1.2892 6 1 0.5110 2.1266 1.3558 7 6 2.1841 1.4184 2.4762 8 1 3.1633 0.9682 2.4057 9 6 1.4694 1.3336 3.6523 10 7 0.3270 1.9734 3.7751 11 14 2.1238 0.3099 5.0712 12 1 2.9774 1.1583 5.9412 13 1 0.9861 -0.2236 5.8626 14 1 2.9281 -0.8187 4.5377 15 6 2.0935 3.5883 1.2763 16 6 1.5430 4.2962 0.0352 17 6 1.9865 3.5375 -1.2176 18 7 1.4881 2.1575 -1.1578 19 6 1.7763 1.4391 -2.4064 20 6 0.9810 2.0684 -3.5520 21 6 3.2723 1.5304 -2.7137 22 1 -0.3633 -1.0241 0.0851 23 1 -0.3633 0.5858 0.8444 24 1 -0.3634 0.4384 -0.9294 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 -0.0479 2.4468 3.0159 28 1 1.7441 4.1003 2.1728 29 1 3.1831 3.6010 1.2508 30 1 0.4542 4.3174 0.0814 31 1 1.9257 5.3161 -0.0017 32 1 1.5842 4.0309 -2.1024 33 1 3.0752 3.5285 -1.2704 34 1 1.4909 0.3928 -2.2977 35 1 -0.0848 2.0034 -3.3331 36 1 1.2664 3.1147 -3.6607 37 1 1.1951 1.5356 -4.4784 38 1 3.8389 1.0821 -1.8974 39 1 3.4860 0.9977 -3.6403 40 1 3.5577 2.5767 -2.8223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107235993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -19.927568 kcal Electronic energy + Delta-G solvation = -17299.967181 eV Core-core repulsion = 14920.678424 eV Total energy + Delta-G solvation = -2379.288758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31602 -35.06447 -33.24383 -32.23929 -29.35398 -28.32306 -26.98301 -24.59908 -23.81022 -22.61628 -20.26415 -19.79889 -17.97107 -16.61470 -15.50673 -14.96555 -14.12976 -13.92524 -13.67993 -13.65407 -13.11014 -12.85135 -12.49243 -12.17747 -11.93262 -11.60254 -11.46988 -11.36112 -10.95478 -10.91476 -10.78980 -10.64316 -10.49245 -10.16406 -10.04685 -9.91672 -9.86616 -9.34431 -8.84870 -8.42224 -8.14695 -7.55094 -6.28109 -3.95926 3.45550 3.49033 3.64369 4.44989 4.61692 5.15898 5.35354 5.41376 5.52623 5.63496 5.72474 5.76677 5.81921 5.90532 5.96568 6.01859 6.05918 6.12872 6.17826 6.24545 6.41758 6.44740 6.52918 6.56963 6.64553 6.70013 6.74974 6.87079 6.94932 7.08793 7.21985 7.29299 7.57076 7.69602 7.83732 7.92430 8.39496 8.52428 8.97826 9.74696 11.11742 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.009302 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.659664 B = 3009.496919 C = 3309.212966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.100 3.900 4 H 0.022 0.978 5 C 0.040 3.960 6 H 0.049 0.951 7 C -0.586 4.586 8 H 0.044 0.956 9 C 0.023 3.977 10 N -0.913 5.913 11 Si 1.064 2.936 12 H -0.290 1.290 13 H -0.285 1.285 14 H -0.290 1.290 15 C -0.110 4.110 16 C -0.119 4.119 17 C 0.060 3.940 18 N -0.525 5.525 19 C 0.067 3.933 20 C -0.140 4.140 21 C -0.184 4.184 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.271 0.729 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -0.218 -11.174 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 C -0.007 4.007 4 H 0.040 0.960 5 C 0.021 3.979 6 H 0.067 0.933 7 C -0.625 4.625 8 H 0.062 0.938 9 C -0.181 4.181 10 N -0.550 5.550 11 Si 0.893 3.107 12 H -0.217 1.217 13 H -0.211 1.211 14 H -0.216 1.216 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.068 4.068 18 N -0.249 5.249 19 C -0.042 4.042 20 C -0.198 4.198 21 C -0.243 4.243 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.575 -0.634 -9.536 9.686 hybrid contribution 1.401 0.477 -1.697 2.251 sum 2.976 -0.157 -11.233 11.621 Atomic orbital electron populations 1.21602 0.95966 0.99451 1.02173 1.21461 0.96520 0.95913 1.00245 1.21748 0.94945 0.93431 0.90602 0.95975 1.18966 0.97879 0.90164 0.90861 0.93261 1.21849 1.04330 1.37868 0.98435 0.93770 1.25674 0.95419 0.96766 1.00269 1.70753 1.19693 1.31081 1.33486 0.83623 0.75485 0.76013 0.75579 1.21708 1.21095 1.21592 1.21804 0.98740 0.99262 0.95023 1.21676 1.01099 0.97193 0.95748 1.22016 0.96742 0.89988 0.98050 1.62236 1.59297 1.01529 1.01887 1.21773 0.92630 0.99305 0.90451 1.21826 1.00775 1.00354 0.96821 1.22456 0.98832 1.01699 1.01287 0.95020 0.91705 0.93219 0.94621 0.90643 0.91669 0.93095 0.94346 0.92079 0.93510 0.92052 0.95692 0.89647 0.92129 0.93027 0.93144 0.92575 0.92979 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 37.16 0.35 -2.28 16 2 C -0.10 -2.07 4.95 -26.73 -0.13 -2.20 16 3 C 0.10 2.09 1.32 -67.72 -0.09 2.00 16 4 H 0.02 0.49 6.87 -51.93 -0.36 0.14 16 5 C 0.04 0.97 1.40 -91.69 -0.13 0.85 16 6 H 0.05 1.31 4.68 -51.93 -0.24 1.07 16 7 C -0.59 -15.82 7.04 -34.44 -0.24 -16.06 16 8 H 0.04 1.21 7.82 -52.49 -0.41 0.80 16 9 C 0.02 0.65 5.45 -17.82 -0.10 0.55 16 10 N -0.91 -26.99 13.63 55.43 0.76 -26.24 16 11 Si 1.06 25.09 29.91 -169.99 -5.08 20.00 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.11 -2.49 5.27 -26.61 -0.14 -2.63 16 16 C -0.12 -2.24 6.09 -26.65 -0.16 -2.41 16 17 C 0.06 1.03 4.54 -3.84 -0.02 1.02 16 18 N -0.53 -9.48 3.69 -218.76 -0.81 -10.28 16 19 C 0.07 1.02 2.30 -67.71 -0.16 0.87 16 20 C -0.14 -1.82 9.12 37.16 0.34 -1.48 16 21 C -0.18 -2.60 8.45 37.16 0.31 -2.29 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.47 6.28 -51.93 -0.33 1.14 16 24 H 0.05 0.91 7.16 -51.93 -0.37 0.54 16 25 H 0.04 0.63 6.31 -51.93 -0.33 0.30 16 26 H 0.07 1.66 7.13 -51.93 -0.37 1.29 16 27 H 0.27 8.02 6.56 -40.82 -0.27 7.75 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.94 6.21 -51.93 -0.32 0.62 16 33 H 0.02 0.44 6.58 -51.93 -0.34 0.09 16 34 H 0.09 1.34 5.43 -51.93 -0.28 1.06 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.87 6.82 -51.92 -0.35 0.52 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.77 6.46 -51.93 -0.34 0.43 16 LS Contribution 289.72 15.07 4.37 4.37 Total: -1.00 -27.89 289.72 -7.75 -35.65 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.82 Total: 0.59 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -0.16 Total: -24.08 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.05 Total: -36.52 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.89 -7.75 -35.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107235993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.718 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds