Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53003 * 109.47060 * 240.00199 * 2 1 3 5 5 N 1.46894 * 109.47206 * 120.00086 * 2 1 3 6 6 C 1.47948 * 111.00175 * 203.94240 * 5 2 1 7 7 C 1.53922 * 113.33328 * 192.18215 * 6 5 2 8 8 C 1.50531 * 112.93318 * 317.75281 * 7 6 5 9 9 C 1.54517 * 108.86303 * 91.75798 * 8 7 6 10 10 C 1.45875 * 111.67170 * 282.75029 * 9 8 7 11 11 C 1.44298 * 111.00294 * 76.52103 * 5 2 1 12 12 H 1.09001 * 109.72854 * 101.62023 * 11 5 2 13 13 C 1.50696 * 109.69221 * 341.05660 * 11 5 2 14 14 H 1.07999 * 120.00137 * 4.29598 * 13 11 5 15 15 C 1.37880 * 120.00196 * 184.30073 * 13 11 5 16 16 N 1.31519 * 119.99720 * 0.27307 * 15 13 11 17 17 Si 1.86800 * 120.00077 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47312 * 89.99718 * 17 15 13 19 19 H 1.48502 * 109.47046 * 209.99790 * 17 15 13 20 20 H 1.48506 * 109.46981 * 329.99389 * 17 15 13 21 21 H 1.09003 * 109.47349 * 325.97795 * 1 2 3 22 22 H 1.08996 * 109.46995 * 85.97821 * 1 2 3 23 23 H 1.08999 * 109.47129 * 205.97990 * 1 2 3 24 24 H 1.09003 * 109.47456 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47438 * 300.00158 * 3 2 1 26 26 H 1.09001 * 109.47357 * 60.00047 * 3 2 1 27 27 H 1.09002 * 109.46677 * 260.59341 * 4 2 1 28 28 H 1.08997 * 109.47163 * 20.59071 * 4 2 1 29 29 H 1.08997 * 109.46892 * 140.59162 * 4 2 1 30 30 H 1.09002 * 108.71570 * 71.18535 * 6 5 2 31 31 H 1.09004 * 108.70712 * 313.17469 * 6 5 2 32 32 H 1.09002 * 108.78952 * 196.86486 * 7 6 5 33 33 H 1.08996 * 108.70047 * 78.58612 * 7 6 5 34 34 H 1.09000 * 109.57636 * 331.94280 * 8 7 6 35 35 H 1.09010 * 109.67435 * 211.62750 * 8 7 6 36 36 H 1.08997 * 109.04467 * 162.18620 * 9 8 7 37 37 H 1.09004 * 108.97898 * 43.27021 * 9 8 7 38 38 H 1.09000 * 108.84504 * 300.67514 * 10 9 8 39 39 H 1.09008 * 108.75992 * 182.25961 * 10 9 8 40 40 H 0.96992 * 120.00137 * 359.72447 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.3865 -0.2466 1.5481 7 6 4.0672 -1.1362 2.6038 8 6 3.1416 -1.5305 3.7236 9 6 2.4705 -2.8757 3.3668 10 6 1.3971 -2.7011 2.3945 11 6 1.8960 -2.1231 1.0573 12 1 2.8665 -2.5536 0.8103 13 6 0.9069 -2.4414 -0.0342 14 1 0.4701 -1.6437 -0.6166 15 6 0.5594 -3.7511 -0.2892 16 7 1.0872 -4.7222 0.4236 17 14 -0.6662 -4.1457 -1.6427 18 1 0.0584 -4.3491 -2.9228 19 1 -1.4092 -5.3828 -1.2924 20 1 -1.6222 -3.0187 -1.7887 21 1 -0.3634 0.8518 0.5750 22 1 -0.3633 0.0721 -1.0251 23 1 -0.3633 -0.9238 0.4502 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 2.3194 -1.7425 -0.9905 28 1 1.2541 -0.7398 -2.0043 29 1 2.9097 -0.1951 -1.6429 30 1 3.3350 0.7728 1.9306 31 1 3.9960 -0.2478 0.6444 32 1 4.9159 -0.5962 3.0236 33 1 4.4331 -2.0397 2.1161 34 1 2.3774 -0.7640 3.8527 35 1 3.7093 -1.6395 4.6478 36 1 2.0601 -3.3200 4.2735 37 1 3.2215 -3.5472 2.9505 38 1 0.6497 -2.0267 2.8125 39 1 0.9320 -3.6692 2.2081 40 1 1.7238 -4.5173 1.1261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213809429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = 43.440469 kcal Electronic energy + Delta-G solvation = -17803.869119 eV Core-core repulsion = 15427.328206 eV Total energy + Delta-G solvation = -2376.540914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62121 -35.82665 -33.71909 -30.99390 -30.25430 -28.09471 -26.26703 -24.95866 -24.23198 -22.67515 -19.77771 -19.45590 -18.09367 -16.67644 -15.25267 -14.83808 -14.10975 -13.84728 -13.70248 -13.35119 -13.05298 -12.84821 -12.12326 -12.06601 -11.52487 -11.28939 -11.25831 -10.97692 -10.83999 -10.67302 -10.50526 -10.26326 -10.18461 -10.05528 -10.02434 -9.88431 -9.54747 -9.35347 -9.18057 -8.24758 -8.04250 -6.99017 -6.18257 -3.91867 3.43419 3.46193 3.60989 4.53449 4.86535 5.33550 5.41801 5.50575 5.63333 5.73741 5.78693 5.98071 6.00029 6.12052 6.21838 6.28506 6.29068 6.39286 6.47613 6.50025 6.57568 6.60681 6.70912 6.72060 6.83097 6.89177 6.95263 6.99058 7.14389 7.24521 7.36423 7.50712 7.59778 7.79283 7.90870 8.31428 8.60752 8.75709 8.93799 9.68210 11.07542 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.014133 C = 0.010031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.814555 B = 1980.702027 C = 2790.607498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.126 3.874 3 C -0.144 4.144 4 C -0.176 4.176 5 N -0.529 5.529 6 C 0.065 3.935 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.106 4.106 10 C -0.128 4.128 11 C 0.215 3.785 12 H -0.007 1.007 13 C -0.614 4.614 14 H 0.100 0.900 15 C 0.017 3.983 16 N -0.918 5.918 17 Si 1.060 2.940 18 H -0.290 1.290 19 H -0.286 1.286 20 H -0.288 1.288 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.104 0.896 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.009 0.991 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 7.605 1.750 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.037 3.963 3 C -0.202 4.202 4 C -0.234 4.234 5 N -0.254 5.254 6 C -0.062 4.062 7 C -0.154 4.154 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.166 4.166 11 C 0.107 3.893 12 H 0.011 0.989 13 C -0.651 4.651 14 H 0.118 0.882 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.889 3.111 18 H -0.217 1.217 19 H -0.212 1.212 20 H -0.214 1.214 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.123 0.877 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.457 6.472 1.374 6.775 hybrid contribution 1.414 1.050 0.068 1.763 sum 2.871 7.522 1.442 8.180 Atomic orbital electron populations 1.22397 0.94419 1.03127 0.99828 1.20681 0.95365 0.90990 0.89313 1.22159 1.00198 0.97126 1.00723 1.23283 0.98358 1.04687 0.97045 1.61105 1.19709 1.09268 1.35294 1.22298 0.90132 0.97766 0.96051 1.21344 0.97728 0.99637 0.96649 1.21271 0.98548 0.98545 0.96120 1.20592 0.99178 0.95830 0.98804 1.20757 0.97396 1.02626 0.95852 1.18948 0.94982 0.82612 0.92743 0.98944 1.23300 1.27480 0.96303 1.18039 0.88224 1.25621 0.99575 0.92707 1.00814 1.70747 1.28938 1.34930 1.21056 0.83660 0.76103 0.75815 0.75531 1.21724 1.21159 1.21373 0.95378 0.94146 0.87740 0.93330 0.93366 0.92933 0.86610 0.93765 0.97200 0.92602 0.96223 0.93006 0.92655 0.91383 0.93796 0.94168 0.93606 0.93598 0.90119 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.72 37.16 0.29 -2.53 16 2 C 0.13 2.50 0.69 -131.60 -0.09 2.41 16 3 C -0.14 -2.41 7.03 37.16 0.26 -2.15 16 4 C -0.18 -3.68 7.43 37.16 0.28 -3.40 16 5 N -0.53 -11.02 3.81 -212.38 -0.81 -11.83 16 6 C 0.07 1.20 4.07 -2.77 -0.01 1.19 16 7 C -0.12 -2.00 5.28 -27.48 -0.15 -2.14 16 8 C -0.11 -1.87 5.63 -27.17 -0.15 -2.02 16 9 C -0.11 -2.11 5.35 -29.31 -0.16 -2.27 16 10 C -0.13 -2.94 4.08 -29.59 -0.12 -3.06 16 11 C 0.21 5.07 0.77 -69.74 -0.05 5.02 16 12 H -0.01 -0.18 6.54 -51.93 -0.34 -0.52 16 13 C -0.61 -15.49 3.81 -34.44 -0.13 -15.62 16 14 H 0.10 2.42 2.11 -52.50 -0.11 2.31 16 15 C 0.02 0.45 5.19 -17.82 -0.09 0.36 16 16 N -0.92 -26.29 12.71 55.43 0.70 -25.59 16 17 Si 1.06 24.36 29.90 -169.99 -5.08 19.28 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H 0.03 0.51 7.88 -51.93 -0.41 0.10 16 22 H 0.04 0.76 7.34 -51.93 -0.38 0.38 16 23 H 0.10 2.39 5.47 -51.93 -0.28 2.11 16 24 H 0.05 0.78 6.28 -51.93 -0.33 0.45 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.12 2.80 4.33 -51.93 -0.22 2.58 16 28 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 29 H 0.01 0.18 7.71 -51.93 -0.40 -0.22 16 30 H 0.06 0.95 7.09 -51.93 -0.37 0.58 16 31 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.03 6.65 -51.93 -0.35 0.69 16 34 H 0.07 1.24 7.78 -51.93 -0.40 0.83 16 35 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.94 7.58 -51.93 -0.39 0.55 16 38 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.08 2.09 5.05 -51.92 -0.26 1.83 16 40 H 0.28 7.87 5.47 -40.82 -0.22 7.65 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -26.67 274.78 -7.70 -34.37 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.52 Total: 3.84 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -0.13 Total: -24.21 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.10 Total: -37.41 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.67 -7.70 -34.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213809429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.810 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds