Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53003 * 109.47060 * 240.00199 * 2 1 3 5 5 N 1.46894 * 109.47206 * 120.00086 * 2 1 3 6 6 C 1.47948 * 111.00175 * 203.94240 * 5 2 1 7 7 C 1.53922 * 113.33328 * 192.18215 * 6 5 2 8 8 C 1.50531 * 112.93318 * 317.75281 * 7 6 5 9 9 C 1.54517 * 108.86303 * 91.75798 * 8 7 6 10 10 C 1.45875 * 111.67170 * 282.75029 * 9 8 7 11 11 C 1.44298 * 111.00294 * 76.52103 * 5 2 1 12 12 H 1.09001 * 109.72854 * 101.62023 * 11 5 2 13 13 C 1.50696 * 109.69221 * 341.05660 * 11 5 2 14 14 H 1.07999 * 120.00137 * 4.29598 * 13 11 5 15 15 C 1.37880 * 120.00196 * 184.30073 * 13 11 5 16 16 N 1.31519 * 119.99720 * 0.27307 * 15 13 11 17 17 Si 1.86800 * 120.00077 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47312 * 89.99718 * 17 15 13 19 19 H 1.48502 * 109.47046 * 209.99790 * 17 15 13 20 20 H 1.48506 * 109.46981 * 329.99389 * 17 15 13 21 21 H 1.09003 * 109.47349 * 325.97795 * 1 2 3 22 22 H 1.08996 * 109.46995 * 85.97821 * 1 2 3 23 23 H 1.08999 * 109.47129 * 205.97990 * 1 2 3 24 24 H 1.09003 * 109.47456 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47438 * 300.00158 * 3 2 1 26 26 H 1.09001 * 109.47357 * 60.00047 * 3 2 1 27 27 H 1.09002 * 109.46677 * 260.59341 * 4 2 1 28 28 H 1.08997 * 109.47163 * 20.59071 * 4 2 1 29 29 H 1.08997 * 109.46892 * 140.59162 * 4 2 1 30 30 H 1.09002 * 108.71570 * 71.18535 * 6 5 2 31 31 H 1.09004 * 108.70712 * 313.17469 * 6 5 2 32 32 H 1.09002 * 108.78952 * 196.86486 * 7 6 5 33 33 H 1.08996 * 108.70047 * 78.58612 * 7 6 5 34 34 H 1.09000 * 109.57636 * 331.94280 * 8 7 6 35 35 H 1.09010 * 109.67435 * 211.62750 * 8 7 6 36 36 H 1.08997 * 109.04467 * 162.18620 * 9 8 7 37 37 H 1.09004 * 108.97898 * 43.27021 * 9 8 7 38 38 H 1.09000 * 108.84504 * 300.67514 * 10 9 8 39 39 H 1.09008 * 108.75992 * 182.25961 * 10 9 8 40 40 H 0.96992 * 120.00137 * 359.72447 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.3865 -0.2466 1.5481 7 6 4.0672 -1.1362 2.6038 8 6 3.1416 -1.5305 3.7236 9 6 2.4705 -2.8757 3.3668 10 6 1.3971 -2.7011 2.3945 11 6 1.8960 -2.1231 1.0573 12 1 2.8665 -2.5536 0.8103 13 6 0.9069 -2.4414 -0.0342 14 1 0.4701 -1.6437 -0.6166 15 6 0.5594 -3.7511 -0.2892 16 7 1.0872 -4.7222 0.4236 17 14 -0.6662 -4.1457 -1.6427 18 1 0.0584 -4.3491 -2.9228 19 1 -1.4092 -5.3828 -1.2924 20 1 -1.6222 -3.0187 -1.7887 21 1 -0.3634 0.8518 0.5750 22 1 -0.3633 0.0721 -1.0251 23 1 -0.3633 -0.9238 0.4502 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 2.3194 -1.7425 -0.9905 28 1 1.2541 -0.7398 -2.0043 29 1 2.9097 -0.1951 -1.6429 30 1 3.3350 0.7728 1.9306 31 1 3.9960 -0.2478 0.6444 32 1 4.9159 -0.5962 3.0236 33 1 4.4331 -2.0397 2.1161 34 1 2.3774 -0.7640 3.8527 35 1 3.7093 -1.6395 4.6478 36 1 2.0601 -3.3200 4.2735 37 1 3.2215 -3.5472 2.9505 38 1 0.6497 -2.0267 2.8125 39 1 0.9320 -3.6692 2.2081 40 1 1.7238 -4.5173 1.1261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213809429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = 28.576630 kcal Electronic energy + Delta-G solvation = -17804.513664 eV Core-core repulsion = 15427.328206 eV Total energy + Delta-G solvation = -2377.185458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29705 -37.40514 -35.55259 -32.63427 -31.98838 -29.70179 -27.92365 -26.61907 -25.85861 -24.47668 -21.36127 -21.13027 -19.87603 -18.43746 -16.98952 -16.43698 -15.73987 -15.56310 -15.25533 -15.00985 -14.73796 -14.39269 -13.88884 -13.65551 -13.10464 -12.96811 -12.78959 -12.61475 -12.49175 -12.29865 -12.12104 -11.95284 -11.91942 -11.72128 -11.58808 -11.42921 -11.32385 -11.00935 -10.88924 -10.26865 -9.95654 -8.68720 -8.27498 -5.99329 1.54770 1.61564 1.77001 2.64101 3.23300 3.39428 3.88661 4.11563 4.12852 4.22863 4.32615 4.41348 4.51069 4.59399 4.71303 4.78999 4.84211 4.90646 4.95073 4.99390 5.03595 5.07968 5.13048 5.14431 5.21692 5.32983 5.34967 5.38217 5.49091 5.55095 5.60408 5.78563 5.80289 5.92318 6.09845 6.36523 6.74954 6.85642 7.01958 7.67448 8.98654 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.014133 C = 0.010031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.814555 B = 1980.702027 C = 2790.607498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.116 3.884 3 C -0.136 4.136 4 C -0.170 4.170 5 N -0.533 5.533 6 C 0.062 3.938 7 C -0.116 4.116 8 C -0.097 4.097 9 C -0.107 4.107 10 C -0.116 4.116 11 C 0.225 3.775 12 H -0.042 1.042 13 C -0.602 4.602 14 H 0.112 0.888 15 C -0.037 4.037 16 N -0.954 5.954 17 Si 1.097 2.903 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.267 1.267 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.014 0.986 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.046 0.954 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 10.195 1.911 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 C -0.193 4.193 4 C -0.228 4.228 5 N -0.257 5.257 6 C -0.065 4.065 7 C -0.153 4.153 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.155 4.155 11 C 0.116 3.884 12 H -0.025 1.025 13 C -0.640 4.640 14 H 0.129 0.871 15 C -0.235 4.235 16 N -0.596 5.596 17 Si 0.922 3.078 18 H -0.209 1.209 19 H -0.220 1.220 20 H -0.192 1.192 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.720 9.093 1.532 9.380 hybrid contribution 1.365 0.301 0.015 1.398 sum 3.085 9.394 1.547 10.007 Atomic orbital electron populations 1.22280 0.94637 1.02133 1.00378 1.20854 0.95342 0.92941 0.88174 1.22060 1.00648 0.94488 1.02116 1.23103 0.99098 1.02692 0.97883 1.61098 1.21559 1.07311 1.35768 1.22433 0.88627 0.99147 0.96308 1.21370 0.98719 0.98967 0.96266 1.21197 0.98537 0.96304 0.97432 1.20546 0.97987 0.97649 0.98253 1.20595 0.98068 1.00390 0.96470 1.18694 0.92687 0.84476 0.92499 1.02495 1.23708 1.26269 0.96285 1.17733 0.87064 1.26745 1.01017 0.93374 1.02339 1.70829 1.30590 1.35750 1.22385 0.83167 0.74903 0.75931 0.73788 1.20947 1.22025 1.19166 0.93409 0.93209 0.91174 0.92590 0.91667 0.91898 0.90515 0.93607 0.95513 0.90084 0.96782 0.89470 0.94985 0.91653 0.90738 0.92965 0.95094 0.94358 0.93544 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 7.72 71.98 0.56 -4.65 16 2 C 0.12 4.37 0.69 3.53 0.00 4.37 16 3 C -0.14 -4.00 7.03 71.98 0.51 -3.50 16 4 C -0.17 -6.90 7.43 71.98 0.54 -6.36 16 5 N -0.53 -21.61 3.81 -825.84 -3.15 -24.76 16 6 C 0.06 2.15 4.07 86.41 0.35 2.50 16 7 C -0.12 -3.75 5.28 30.11 0.16 -3.59 16 8 C -0.10 -3.17 5.63 30.31 0.17 -3.00 16 9 C -0.11 -4.26 5.35 28.93 0.15 -4.11 16 10 C -0.12 -5.52 4.08 28.74 0.12 -5.40 16 11 C 0.22 10.85 0.77 44.99 0.03 10.89 16 12 H -0.04 -2.32 6.54 -2.39 -0.02 -2.34 16 13 C -0.60 -31.02 3.81 25.60 0.10 -30.92 16 14 H 0.11 5.38 2.11 -2.93 -0.01 5.38 16 15 C -0.04 -2.05 5.19 84.65 0.44 -1.61 16 16 N -0.95 -57.19 12.71 21.45 0.27 -56.92 16 17 Si 1.10 49.87 29.90 68.60 2.05 51.92 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H 0.05 1.61 7.88 -2.39 -0.02 1.59 16 22 H 0.05 1.77 7.34 -2.39 -0.02 1.75 16 23 H 0.07 3.16 5.47 -2.39 -0.01 3.15 16 24 H 0.06 1.57 6.28 -2.39 -0.01 1.56 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 27 H 0.08 3.76 4.33 -2.39 -0.01 3.75 16 28 H 0.04 1.80 6.86 -2.39 -0.02 1.78 16 29 H 0.03 0.96 7.71 -2.39 -0.02 0.95 16 30 H 0.08 2.42 7.09 -2.39 -0.02 2.41 16 31 H 0.01 0.50 7.11 -2.38 -0.02 0.48 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.03 1.18 6.65 -2.39 -0.02 1.16 16 34 H 0.06 2.20 7.78 -2.39 -0.02 2.18 16 35 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.03 1.30 7.58 -2.38 -0.02 1.29 16 38 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.05 2.53 5.05 -2.38 -0.01 2.52 16 40 H 0.27 16.06 5.47 -92.71 -0.51 15.55 16 Total: -1.00 -59.31 274.78 3.57 -55.74 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.27 Total: 19.40 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 3.12 Total: -45.38 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.87 Total: -81.67 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Total: -59.31 3.57 -55.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213809429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.315 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds