Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46681 * 2 1 4 4 H 1.08999 * 109.47492 * 305.66562 * 3 2 1 5 5 C 1.50709 * 109.46622 * 185.66974 * 3 2 1 6 6 H 1.08001 * 119.99553 * 239.99368 * 5 3 2 7 7 C 1.37878 * 120.00119 * 60.00269 * 5 3 2 8 8 N 1.31512 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99714 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47208 * 90.00204 * 9 7 5 11 11 H 1.48500 * 109.46547 * 209.99954 * 9 7 5 12 12 H 1.48498 * 109.47086 * 329.99645 * 9 7 5 13 13 N 1.46895 * 109.47300 * 65.67257 * 3 2 1 14 14 C 1.46902 * 110.99615 * 254.52169 * 13 3 2 15 15 H 1.08999 * 110.05831 * 46.86812 * 14 13 3 16 16 C 1.54269 * 110.03237 * 285.44898 * 14 13 3 17 17 C 1.54890 * 104.19385 * 217.10911 * 16 14 13 18 18 C 1.54886 * 102.75132 * 37.94475 * 17 16 14 19 19 C 1.53873 * 110.03018 * 168.28389 * 14 13 3 20 20 H 1.09003 * 110.03649 * 238.56935 * 19 14 13 21 21 C 1.53002 * 110.03551 * 359.95201 * 19 14 13 22 22 C 1.52993 * 109.47466 * 183.95400 * 21 19 14 23 23 H 1.08994 * 109.47499 * 58.15718 * 1 2 3 24 24 H 1.08998 * 109.46666 * 178.15586 * 1 2 3 25 25 H 1.09001 * 109.47213 * 298.15107 * 1 2 3 26 26 H 1.09003 * 109.47112 * 240.00514 * 2 1 3 27 27 H 1.08999 * 109.47612 * 119.99922 * 2 1 3 28 28 H 0.96998 * 119.99365 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00208 * 18.47485 * 13 3 2 30 30 H 1.09005 * 110.48159 * 335.78459 * 16 14 13 31 31 H 1.08998 * 110.48818 * 98.42799 * 16 14 13 32 32 H 1.09001 * 110.75581 * 279.62215 * 17 16 14 33 33 H 1.09005 * 110.90875 * 156.33197 * 17 16 14 34 34 H 1.09000 * 110.48659 * 203.37922 * 18 17 16 35 35 H 1.08993 * 110.49207 * 80.73345 * 18 17 16 36 36 H 1.09000 * 109.46873 * 303.95497 * 21 19 14 37 37 H 1.08999 * 109.47438 * 63.94927 * 21 19 14 38 38 H 1.09000 * 109.47154 * 299.99926 * 22 21 19 39 39 H 1.09006 * 109.47444 * 60.00011 * 22 21 19 40 40 H 1.09003 * 109.47097 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5961 1.9849 -0.8349 5 6 3.5404 1.4449 -0.1404 6 1 4.1542 1.8865 0.6308 7 6 4.1296 0.8833 -1.2533 8 7 3.3822 0.3452 -2.1921 9 14 5.9895 0.8869 -1.4275 10 1 6.5462 -0.3469 -0.8169 11 1 6.3516 0.9336 -2.8669 12 1 6.5490 2.0768 -0.7374 13 7 1.6652 2.0944 1.2620 14 6 0.5578 3.0379 1.0585 15 1 -0.2261 2.5713 0.4619 16 6 1.0708 4.3109 0.3541 17 6 0.2636 5.4591 1.0093 18 6 0.1785 5.0150 2.4907 19 6 -0.0096 3.4856 2.4169 20 1 -1.0688 3.2362 2.4797 21 6 0.7565 2.8069 3.5543 22 6 0.1200 3.1832 4.8937 23 1 -0.3634 0.5421 -0.8729 24 1 -0.3632 -1.0271 -0.0331 25 1 -0.3634 0.4848 0.9061 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 3.7967 -0.0501 -2.9748 29 1 1.4330 1.4109 1.9670 30 1 2.1376 4.4432 0.5348 31 1 0.8671 4.2635 -0.7156 32 1 -0.7312 5.5315 0.5699 33 1 0.7936 6.4074 0.9202 34 1 -0.6765 5.4813 2.9803 35 1 1.1011 5.2609 3.0164 36 1 0.7170 1.7254 3.4243 37 1 1.7953 3.1367 3.5402 38 1 0.1596 4.2647 5.0237 39 1 -0.9188 2.8533 4.9078 40 1 0.6656 2.6993 5.7039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229635768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = -39.350725 kcal Electronic energy + Delta-G solvation = -16699.141785 eV Core-core repulsion = 14319.010776 eV Total energy + Delta-G solvation = -2380.131009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18252 -37.15175 -34.10103 -33.91455 -32.07492 -29.17150 -28.33278 -26.83828 -24.46672 -23.65776 -21.76781 -21.10771 -19.68330 -18.33751 -16.93590 -16.54297 -16.36183 -15.64452 -15.28751 -15.10549 -14.69535 -14.05568 -13.96049 -13.59455 -13.28662 -13.09905 -13.00675 -12.68727 -12.44732 -12.11620 -12.08317 -11.91651 -11.87132 -11.78297 -11.58781 -11.48083 -11.37974 -11.20318 -11.09846 -10.87610 -10.39175 -8.79043 -8.03743 -6.14329 1.41328 1.42010 1.52784 2.45633 3.21579 3.69174 3.77730 3.83885 4.13036 4.41135 4.42797 4.45768 4.51389 4.56669 4.67111 4.68775 4.77996 4.83390 4.88715 4.97021 5.04283 5.12309 5.15637 5.17797 5.27341 5.28661 5.33784 5.35048 5.44799 5.53533 5.54443 5.64380 5.70650 5.79361 5.92911 6.40715 6.78405 6.99148 7.04600 7.55242 8.99565 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.007949 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.114024 B = 3521.487883 C = 3713.732509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.504 4.504 6 H 0.049 0.951 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.084 3.916 15 H 0.019 0.981 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.084 4.084 20 H 0.075 0.925 21 C -0.107 4.107 22 C -0.144 4.144 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 6.303 9.872 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 C 0.117 3.883 4 H 0.010 0.990 5 C -0.543 4.543 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.310 5.310 14 C -0.027 4.027 15 H 0.037 0.963 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.142 4.142 19 C -0.103 4.103 20 H 0.094 0.906 21 C -0.145 4.145 22 C -0.202 4.202 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.151 0.849 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.716 6.693 9.660 14.059 hybrid contribution 0.466 -1.002 -0.940 1.451 sum -7.249 5.691 8.720 12.688 Atomic orbital electron populations 1.21728 0.96599 1.00723 1.00135 1.22031 0.94112 1.00783 1.01141 1.18905 0.93659 0.89180 0.86592 0.98959 1.21565 0.93137 1.35458 1.04166 0.93245 1.25685 1.02080 0.95591 0.95762 1.70008 1.36073 1.40372 1.09941 0.85620 0.81112 0.78370 0.76870 1.20242 1.21137 1.19753 1.60998 1.38461 1.21506 1.09994 1.22218 0.91135 0.93350 0.95973 0.96272 1.22332 0.99896 0.95158 0.97673 1.22448 0.99800 0.97182 0.96037 1.22342 1.02006 0.93924 0.95966 1.21873 0.98988 0.96359 0.93047 0.90641 1.21415 0.99574 0.99295 0.94216 1.21765 1.00575 1.01786 0.96056 0.94773 0.92695 0.92997 0.91549 0.94725 0.93275 0.84926 0.92963 0.94665 0.90960 0.90941 0.89885 0.91826 0.93149 0.92510 0.92076 0.92419 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.90 71.98 0.64 -4.62 16 2 C -0.14 -6.77 5.07 30.60 0.16 -6.62 16 3 C 0.23 11.46 1.91 44.17 0.08 11.54 16 4 H -0.01 -0.43 7.25 -2.39 -0.02 -0.45 16 5 C -0.50 -28.65 8.84 25.60 0.23 -28.42 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.35 5.29 84.66 0.45 0.80 16 8 N -0.92 -54.30 11.29 21.45 0.24 -54.06 16 9 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.68 -28.47 4.99 -469.59 -2.34 -30.81 16 14 C 0.08 3.01 2.52 45.64 0.11 3.13 16 15 H 0.02 0.74 6.65 -2.39 -0.02 0.72 16 16 C -0.11 -4.09 5.85 31.67 0.19 -3.90 16 17 C -0.12 -3.09 6.91 31.88 0.22 -2.87 16 18 C -0.10 -2.51 5.48 31.67 0.17 -2.33 16 19 C -0.08 -2.30 2.94 -10.07 -0.03 -2.33 16 20 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 21 C -0.11 -2.86 4.17 30.59 0.13 -2.73 16 22 C -0.14 -2.93 9.76 71.98 0.70 -2.23 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.82 6.67 -2.39 -0.02 1.80 16 26 H 0.07 3.65 5.94 -2.39 -0.01 3.63 16 27 H 0.03 1.61 8.04 -2.39 -0.02 1.59 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 12.99 5.14 -89.69 -0.46 12.52 16 30 H 0.05 2.17 8.05 -2.38 -0.02 2.15 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.73 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.58 7.78 -2.39 -0.02 1.56 16 36 H 0.05 1.43 6.38 -2.39 -0.02 1.41 16 37 H 0.06 1.75 7.86 -2.39 -0.02 1.73 16 38 H 0.06 1.13 7.47 -2.39 -0.02 1.11 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -60.50 301.38 3.49 -57.01 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.52 Total: 21.20 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 3.05 Total: -40.59 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.10 Total: -84.87 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -60.50 3.49 -57.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229635768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.657 kcal (2) G-P(sol) polarization free energy of solvation -60.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds