Wall clock time and date at job start Mon Mar 30 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47385 * 53.76306 * 3 2 1 5 5 C 1.52998 * 109.47115 * 293.76279 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47337 * 59.99978 * 6 5 3 8 8 C 1.53005 * 109.47288 * 299.99819 * 7 6 5 9 9 C 1.53004 * 109.46840 * 60.00135 * 8 7 6 10 10 H 1.08997 * 109.47269 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47117 * 60.00067 * 9 8 7 12 12 C 1.46904 * 110.99812 * 141.08130 * 11 9 8 13 13 H 1.09001 * 109.46722 * 34.71327 * 12 11 9 14 14 C 1.53000 * 109.46594 * 274.71609 * 12 11 9 15 15 C 1.50691 * 109.46954 * 154.71571 * 12 11 9 16 16 H 1.08002 * 120.00372 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00004 * 179.72224 * 15 12 11 18 18 N 1.31515 * 119.99621 * 0.27754 * 17 15 12 19 19 Si 1.86796 * 120.00264 * 180.27590 * 17 15 12 20 20 H 1.48497 * 109.47345 * 60.00146 * 19 17 15 21 21 H 1.48497 * 109.47345 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47279 * 300.00047 * 19 17 15 23 23 H 1.08999 * 109.47331 * 300.00172 * 1 2 3 24 24 H 1.09006 * 109.46831 * 60.00163 * 1 2 3 25 25 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47331 * 239.99828 * 2 1 3 27 27 H 1.09001 * 109.46647 * 119.99374 * 2 1 3 28 28 H 1.09009 * 109.46958 * 299.99975 * 5 3 2 29 29 H 1.08996 * 109.47329 * 59.99867 * 5 3 2 30 30 H 1.09003 * 109.46827 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47173 * 299.99863 * 6 5 3 32 32 H 1.09009 * 109.47339 * 59.99915 * 7 6 5 33 33 H 1.09004 * 109.47367 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47067 * 300.00020 * 8 7 6 35 35 H 1.09004 * 109.47199 * 179.97438 * 8 7 6 36 36 H 1.00895 * 111.00186 * 17.12435 * 11 9 8 37 37 H 1.08992 * 109.47145 * 295.30908 * 14 12 11 38 38 H 1.08996 * 109.47375 * 55.32087 * 14 12 11 39 39 H 1.09011 * 109.46690 * 175.31542 * 14 12 11 40 40 H 0.97008 * 119.99537 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5884 1.9876 0.8288 5 6 1.6619 2.1171 -1.3202 6 6 2.1725 3.5594 -1.3204 7 6 3.6944 3.5618 -1.1640 8 6 4.0725 2.8872 0.1562 9 6 3.5620 1.4449 0.1565 10 1 3.8309 0.9644 1.0971 11 7 4.1702 0.7100 -0.9607 12 6 4.5096 -0.6634 -0.5647 13 1 3.7636 -1.0335 0.1385 14 6 5.8877 -0.6766 0.0997 15 6 4.5317 -1.5470 -1.7851 16 1 4.3149 -1.1303 -2.7577 17 6 4.8338 -2.8866 -1.6610 18 7 5.0973 -3.3941 -0.4767 19 14 4.8688 -3.9804 -3.1748 20 1 5.8847 -3.4707 -4.1305 21 1 5.2166 -5.3677 -2.7752 22 1 3.5323 -3.9726 -3.8222 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.1136 1.5720 -2.1491 29 1 0.5777 2.1151 -1.4319 30 1 1.9035 4.0398 -2.2612 31 1 1.7212 4.1047 -0.4916 32 1 4.1457 3.0164 -1.9930 33 1 4.0580 4.5893 -1.1637 34 1 3.6212 3.4325 0.9851 35 1 5.1568 2.8885 0.2675 36 1 4.9812 1.1953 -1.3139 37 1 6.6449 -0.3859 -0.6284 38 1 5.8961 0.0259 0.9330 39 1 6.1039 -1.6797 0.4679 40 1 5.3095 -4.3367 -0.3893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251677159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:02 Heat of formation + Delta-G solvation = -33.533306 kcal Electronic energy + Delta-G solvation = -16913.593994 eV Core-core repulsion = 14533.715247 eV Total energy + Delta-G solvation = -2379.878747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97182 -34.86843 -33.44763 -32.16914 -29.70656 -28.51805 -26.43578 -25.05273 -23.37807 -21.69440 -20.43937 -19.86307 -18.45425 -16.25706 -15.22048 -14.80381 -14.54352 -13.77304 -13.70137 -13.53739 -12.87663 -12.79631 -12.27748 -12.08598 -11.89040 -11.61306 -11.37179 -11.05321 -10.91943 -10.85471 -10.75344 -10.56499 -10.47163 -10.20196 -10.06284 -9.77081 -9.71970 -9.51949 -9.38551 -8.80036 -8.28697 -7.07552 -5.92692 -3.94633 3.37058 3.41152 3.44450 4.48595 5.11879 5.15696 5.19955 5.39187 5.52282 5.65052 5.65560 5.76880 5.81785 5.94957 5.95758 6.03729 6.09492 6.23392 6.25928 6.34319 6.43811 6.49360 6.62019 6.64142 6.73770 6.77391 6.85261 6.90609 6.94435 7.06033 7.21623 7.31685 7.52001 7.80622 7.97041 8.37978 8.66568 8.74536 9.12945 9.70401 11.14526 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.008731 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.482807 B = 3206.236479 C = 3530.468978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.065 4.065 4 H 0.049 0.951 5 C -0.106 4.106 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.124 4.124 9 C 0.090 3.910 10 H 0.039 0.961 11 N -0.672 5.672 12 C 0.208 3.792 13 H 0.041 0.959 14 C -0.168 4.168 15 C -0.490 4.490 16 H 0.060 0.940 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.278 1.278 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.323 0.677 37 H 0.027 0.973 38 H 0.002 0.998 39 H 0.084 0.916 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 10.622 1.078 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.084 4.084 4 H 0.067 0.933 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.021 4.021 10 H 0.057 0.943 11 N -0.302 5.302 12 C 0.101 3.899 13 H 0.059 0.941 14 C -0.227 4.227 15 C -0.529 4.529 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.204 1.204 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.046 0.954 38 H 0.021 0.979 39 H 0.102 0.898 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.466 10.258 0.885 11.657 hybrid contribution 0.933 -0.551 -0.069 1.086 sum -4.533 9.707 0.816 10.744 Atomic orbital electron populations 1.21827 0.97557 1.00701 1.00549 1.21583 0.93745 0.96535 1.03653 1.21053 0.95002 0.95813 0.96552 0.93257 1.21494 0.98866 0.94666 0.99311 1.21474 0.95785 0.97606 1.00220 1.21438 0.96240 0.99000 0.98340 1.21822 0.99939 0.96810 0.97645 1.21468 0.94528 0.92014 0.94101 0.94253 1.60813 1.33476 1.04109 1.31821 1.19325 0.91592 0.83701 0.95322 0.94136 1.22451 1.00789 1.02012 0.97488 1.21114 1.45322 0.92577 0.93923 0.92176 1.24932 0.95740 0.98077 0.95744 1.69889 1.48594 1.13234 1.22084 0.86638 0.78405 0.79421 0.83331 1.20519 1.21605 1.20373 0.94029 0.93091 0.93460 0.89158 0.92976 0.90018 0.93455 0.92993 0.93271 0.90976 0.93438 0.92601 0.92684 0.86007 0.95414 0.97897 0.89768 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.69 37.16 0.36 -1.90 16 2 C -0.12 -2.13 3.99 -26.73 -0.11 -2.24 16 3 C -0.06 -1.06 2.00 -90.62 -0.18 -1.25 16 4 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.11 -1.62 4.82 -26.73 -0.13 -1.75 16 6 C -0.11 -1.51 5.92 -26.74 -0.16 -1.67 16 7 C -0.11 -1.54 5.74 -26.73 -0.15 -1.69 16 8 C -0.12 -1.83 5.25 -26.73 -0.14 -1.97 16 9 C 0.09 1.57 2.26 -67.71 -0.15 1.42 16 10 H 0.04 0.77 7.17 -51.93 -0.37 0.39 16 11 N -0.67 -13.56 4.48 -100.95 -0.45 -14.01 16 12 C 0.21 5.06 1.51 -68.87 -0.10 4.96 16 13 H 0.04 1.08 5.84 -51.93 -0.30 0.77 16 14 C -0.17 -4.04 8.86 37.16 0.33 -3.71 16 15 C -0.49 -13.27 8.84 -34.44 -0.30 -13.58 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 18 N -0.90 -25.65 11.36 55.43 0.63 -25.02 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.73 6.61 -51.93 -0.34 0.38 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.94 7.10 -51.93 -0.37 1.57 16 27 H 0.05 1.01 7.52 -51.93 -0.39 0.62 16 28 H 0.08 1.44 7.60 -51.92 -0.39 1.04 16 29 H 0.05 0.67 6.61 -51.93 -0.34 0.33 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.07 7.11 -51.92 -0.37 0.71 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.32 6.38 7.19 -39.29 -0.28 6.10 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.00 0.04 7.65 -51.93 -0.40 -0.35 16 39 H 0.08 2.25 6.20 -51.92 -0.32 1.93 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -26.88 296.88 -8.44 -35.32 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.24 Total: 4.63 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.84 Total: -21.94 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.18 Total: -39.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.88 -8.44 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251677159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.790 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds